UBERON:0006240: Difference between revisions
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(Created page with "{{UBERON
|id=UBERON:0006240
|name=future forebrain
|namespace=
|def=
|xref=EFO:0003423;;EHDAA:2643;;EHDAA2:0000661;;EMAPA:16640;;ZFA:0000062
|is_a=UBERON:0002050;;UBERON...") |
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|part_of=UBERON:0000922;;UBERON:0006238 | |part_of=UBERON:0000922;;UBERON:0006238 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:23, 15 June 2012
| Name: | future forebrain | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"presumptive forebrain" EXACT [ZFA:0000062] "prosencephalon" RELATED [] | ||
| Comments: | TODO. Add relationships to neural plate (both ZFA and EMAPA time this with the neural plate) | ||
| Subset: |
emapa_ehdaa2 vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002050(embryonic structure),UBERON:0005423(developing anatomical structure) |
|---|---|
| part_of: | UBERON:0000922(embryo),UBERON:0006238(future brain) |
Children
| part of: | UBERON:0006222 (future diencephalon),UBERON:0014371 (future telencephalon) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006240 (future forebrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.11e-141 | FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_33578e20b178c934ad5b7a60cc5954ae | p@chr5:89977201..89977236, + |
| 6.11e-141 | FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_33578e20b178c934ad5b7a60cc5954ae | p@chr5:89977201..89977236, + |
| 2.38e-133 | FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_4fa925e21646a4c5721a688e41257817 | p5@ST8SIA3 |
| 2.38e-133 | FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_4fa925e21646a4c5721a688e41257817 | p5@ST8SIA3 |
| 6.8e-130 | FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_97e6a8013cee26debaf9be09e35c5bf2 | p5@PHACTR1 |
| 6.8e-130 | FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_97e6a8013cee26debaf9be09e35c5bf2 | p5@PHACTR1 |
| 2.27e-128 | FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_d878b29670cb65a087dd6d9f34ac97ad | p3@PHACTR1 |
| 2.27e-128 | FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_d878b29670cb65a087dd6d9f34ac97ad | p3@PHACTR1 |
| 6.39e-128 | FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_48f4c74011ab65538e2cf08ed913b7b8 | p6@PSD |
| 6.39e-128 | FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_48f4c74011ab65538e2cf08ed913b7b8 | p6@PSD |
| 7.77e-125 | FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_b33e6758f1f8a3e591dfe31b77e5b45d | p@chr20:61806320..61806344, + |
| 7.77e-125 | FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_b33e6758f1f8a3e591dfe31b77e5b45d | p@chr20:61806320..61806344, + |
| 3.82e-123 | FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_0608786ad8ad0586e6da7b7eee48f883 | p2@FXYD7 |
| 3.82e-123 | FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_0608786ad8ad0586e6da7b7eee48f883 | p2@FXYD7 |
| 1.09e-121 | FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_fda764ecbe51012106508becf2b28bc5 | p1@NR2E1 |
| 1.09e-121 | FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_fda764ecbe51012106508becf2b28bc5 | p1@NR2E1 |
| 2.87e-118 | FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_c6b6f80d5d3627a690dfff7d38921c8e | p5@OPCML |
| 2.87e-118 | FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_c6b6f80d5d3627a690dfff7d38921c8e | p5@OPCML |
| 7.25e-118 | FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_df75ecaf4f25d80e22b9f207440e80db | p4@DPP6 |
| 7.25e-118 | FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_df75ecaf4f25d80e22b9f207440e80db | p4@DPP6 |
| 8.87e-118 | FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_e98bc3e85dbcd085c768eee6628433ba | p9@GPM6B |
| 8.87e-118 | FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_e98bc3e85dbcd085c768eee6628433ba | p9@GPM6B |
| 1.66e-117 | FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_c4ba6e7dd744beb133a660b1ccc5152f | p@chr4:6514469..6514483, - |
| 1.66e-117 | FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_c4ba6e7dd744beb133a660b1ccc5152f | p@chr4:6514469..6514483, - |
| 2.75e-117 | FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_3004d62c7d2697eefb8f2078c7c40ebe | p3@GRIN2B |
| 2.75e-117 | FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_3004d62c7d2697eefb8f2078c7c40ebe | p3@GRIN2B |
| 2.82e-116 | FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_2e130dbdc61dad6b0605b6e8062b4846 | p4@PHACTR1 |
| 2.82e-116 | FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_2e130dbdc61dad6b0605b6e8062b4846 | p4@PHACTR1 |
| 2.93e-116 | FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_3e251ccd252a703672e86df6b3ba61db | p8@RIMS2 |
| 2.93e-116 | FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_3e251ccd252a703672e86df6b3ba61db | p8@RIMS2 |
| 5.58e-116 | FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_619fc158d7c0f1a486143232e39dd65a | p8@LRRC7 |
| 5.58e-116 | FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_619fc158d7c0f1a486143232e39dd65a | p8@LRRC7 |
| 6.52e-116 | FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_f1a6b9cc6d2ecfc44b2537225b9963b4 | p4@DLGAP3 |
| 6.52e-116 | FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_f1a6b9cc6d2ecfc44b2537225b9963b4 | p4@DLGAP3 |
| 6.61e-116 | FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_17c043d81bec6ef539323f8a0a680340 | p8@PHACTR1 |
| 6.61e-116 | FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_17c043d81bec6ef539323f8a0a680340 | p8@PHACTR1 |
| 5.28e-115 | FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_a2ce1bb1c25284ed6bfc3c53ea3f849c | p3@DOCK4 |
| 5.28e-115 | FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_a2ce1bb1c25284ed6bfc3c53ea3f849c | p3@DOCK4 |
| 5.97e-115 | FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_f025312d47ea713bc69334c12ea13b10 | p3@GPR98 |
| 5.97e-115 | FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_f025312d47ea713bc69334c12ea13b10 | p3@GPR98 |
| 1.02e-114 | FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_3b891db668fa6e5c15ccce9320fc9b8f | p2@DLGAP3 |
| 1.02e-114 | FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_3b891db668fa6e5c15ccce9320fc9b8f | p2@DLGAP3 |
| 1.06e-114 | FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_ad9ddfd92e772cb0d9e38b08e687c4ca | p5@MKL2 |
| 1.06e-114 | FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_ad9ddfd92e772cb0d9e38b08e687c4ca | p5@MKL2 |
| 8.42e-114 | FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_2ef1393570f2870e0eadd45f5985297d | p1@uc003ppd.1 |
| 8.42e-114 | FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_2ef1393570f2870e0eadd45f5985297d | p1@uc003ppd.1 |
| 3.53e-113 | FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_c7be013a5a155eacf27ee0753ca49411 | p@chr1:70035018..70035044, + |
| 3.53e-113 | FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_c7be013a5a155eacf27ee0753ca49411 | p@chr1:70035018..70035044, + |
| 5.22e-113 | FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_22a21fe10ca0c949f1738e8c156ea8cb | p6@GABRA2 |
| 5.22e-113 | FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_22a21fe10ca0c949f1738e8c156ea8cb | p6@GABRA2 |
| 5.23e-113 | FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_193b7f365fc21939b5dbaee2d729abc5 | p6@CIT |
| 5.23e-113 | FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_193b7f365fc21939b5dbaee2d729abc5 | p6@CIT |
| 1.08e-112 | FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_e29d7a53bad8f5dd0cb127ba5695ab56 | p2@LMTK3 |
| 1.08e-112 | FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_e29d7a53bad8f5dd0cb127ba5695ab56 | p2@LMTK3 |
| 1.26e-112 | FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_74865b7dc3038fe47a3f8c4eecbc9463 | p10@GPM6B |
| 1.26e-112 | FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_74865b7dc3038fe47a3f8c4eecbc9463 | p10@GPM6B |
| 1.39e-112 | FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_41a5f58d4be4cecc23a9542c390aeb8c | p@chr5:80255907..80255942, + |
| 1.39e-112 | FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_41a5f58d4be4cecc23a9542c390aeb8c | p@chr5:80255907..80255942, + |
| 1.42e-112 | FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_bf527486f1e48d80874a85da1c9408d8 | p@chr17:61194578..61194599, + |
| 1.42e-112 | FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_bf527486f1e48d80874a85da1c9408d8 | p@chr17:61194578..61194599, + |
| 1.66e-112 | FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_5efa480c101467c5b027e8577c81e2ff | p@chr5:89977181..89977199, + |
| 1.66e-112 | FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_5efa480c101467c5b027e8577c81e2ff | p@chr5:89977181..89977199, + |
| 6.89e-112 | FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_8baabdd3026c65e13544479cd91426d1 | p1@ENST00000417881 |
| 6.89e-112 | FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_8baabdd3026c65e13544479cd91426d1 | p1@ENST00000417881 |
| 7.85e-112 | FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_72224f42b2f2cb187e0c54f089f99388 | p6@DPP6 |
| 7.85e-112 | FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_72224f42b2f2cb187e0c54f089f99388 | p6@DPP6 |
| 1.02e-111 | FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_39278ced699f013f61a0c81eefe98c27 | p2@CDH9 |
| 1.02e-111 | FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_39278ced699f013f61a0c81eefe98c27 | p2@CDH9 |
| 1.42e-111 | FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_155aa68210ac9d1cd33f3ce257cc2e1e | p@chr2:3134361..3134374, - |
| 1.42e-111 | FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_155aa68210ac9d1cd33f3ce257cc2e1e | p@chr2:3134361..3134374, - |
| 1.94e-111 | FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_3bdab584955aedf972596dc1a14f47a7 | p3@TIAM2 |
| 1.94e-111 | FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_3bdab584955aedf972596dc1a14f47a7 | p3@TIAM2 |
| 3.18e-111 | FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_17c50a77a73948c6e85f56edbf3ec4da | p1@KALRN |
| 3.18e-111 | FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_17c50a77a73948c6e85f56edbf3ec4da | p1@KALRN |
| 4.18e-111 | FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_d350f56be320258adeae1e45c85ec698 | p4@ASTN1 |
| 4.18e-111 | FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_d350f56be320258adeae1e45c85ec698 | p4@ASTN1 |
| 5.69e-111 | FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_9510378901ef572b191ba73434b542dc | p@chr11:132982177..132982181, - |
| 5.69e-111 | FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_9510378901ef572b191ba73434b542dc | p@chr11:132982177..132982181, - |
| 7.54e-111 | FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_d9314200a207caa7920718b3882348c5 | p5@NKAIN3 |
| 7.54e-111 | FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_d9314200a207caa7920718b3882348c5 | p5@NKAIN3 |
| 1.27e-110 | FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_d94e32705250190511b0402c907fabf5 | p9@ANKS1B |
| 1.27e-110 | FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_d94e32705250190511b0402c907fabf5 | p9@ANKS1B |
| 1.38e-110 | FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_4e35fb7f60281d8af90f2408995cd398 | p3@ARNT2 |
| 1.38e-110 | FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_4e35fb7f60281d8af90f2408995cd398 | p3@ARNT2 |
| 2.12e-110 | FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_b61b2b9c95d277e7c642640c56803e02 | p@chr20:1791316..1791339, - |
| 2.12e-110 | FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_b61b2b9c95d277e7c642640c56803e02 | p@chr20:1791316..1791339, - |
| 2.27e-110 | FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_8569eda7a83d220bbfb4a18778c56c6e | p14@PALM2-AKAP2 |
| 2.27e-110 | FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_8569eda7a83d220bbfb4a18778c56c6e | p14@PALM2-AKAP2 |
| 3.45e-110 | FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_f84c31ec7bab849930c049e3255ed4fd | p6@GPM6B |
| 3.45e-110 | FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_f84c31ec7bab849930c049e3255ed4fd | p6@GPM6B |
| 4.23e-110 | FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_b4bd55a371f8ce97eda5233c1609e070 | p1@ENST00000412957 |
| 4.23e-110 | FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_b4bd55a371f8ce97eda5233c1609e070 | p1@ENST00000412957 |
| 5.12e-110 | FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_4efa6e6923a4c43d45b3099ebd4ddc88 | p7@ANKS1B |
| 5.12e-110 | FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_4efa6e6923a4c43d45b3099ebd4ddc88 | p7@ANKS1B |
| 7.19e-110 | FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_7cbeb7f812d78eb443b3f54397276732 | p@chr20:1791288..1791304, - |
| 7.19e-110 | FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_7cbeb7f812d78eb443b3f54397276732 | p@chr20:1791288..1791304, - |
| 9.49e-110 | FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_601787aa9f9a480d5d60cd462b79f0c5 | p@chr21:43917145..43917190, - |
| 9.49e-110 | FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_601787aa9f9a480d5d60cd462b79f0c5 | p@chr21:43917145..43917190, - |
| 1.01e-109 | FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_50022d3d9ae40ed6ccccf2d358a1b27a | p2@TIAM2 |
| 1.01e-109 | FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_50022d3d9ae40ed6ccccf2d358a1b27a | p2@TIAM2 |
