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(Created page with "{{UBERON |id=UBERON:0006554 |name=urinary system structure |namespace= |def= |xref=SCTID:122489005 |is_a=UBERON:0000061 |synonym= |comment=editor note: note that we do...")
 
 
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|comment=editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning
 
|comment=editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning
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|has_quality=
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|id=UBERON:0006554
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|is_a=UBERON:0000061
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|located_in=
 
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|name=urinary system structure
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|namespace=FANTOM
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|part_of=UBERON:0001008
 
|part_of=UBERON:0001008
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|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
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|subset=
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|xref=SCTID:122489005
 
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Latest revision as of 08:57, 12 September 2014

Name:urinary system structure
Namespace:FANTOM
Xrefs:
links:
SCTID:122489005
Comments:editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0000061(anatomical structure)
part_of:UBERON:0001008(renal system)



Children

is a:UBERON:0000057 (urethra),UBERON:0000074 (renal glomerulus),UBERON:0000163 (embryonic cloaca),UBERON:0000365 (urothelium),UBERON:0001225 (cortex of kidney),UBERON:0001229 (renal corpuscle),UBERON:0001230 (glomerular capsule),UBERON:0001255 (urinary bladder),UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),UBERON:0001285 (nephron),UBERON:0001556 (lower urinary tract),UBERON:0002113 (kidney),UBERON:0002303 (juxtaglomerular apparatus),UBERON:0002319 (mesangium),UBERON:0002321 (extraglomerular mesangium),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0005749 (glomerular tuft),UBERON:0006555 (excretory tube),UBERON:0008987 (renal parenchyma),UBERON:0009846 (embryonic cloacal epithelium),UBERON:0011143 (upper urinary tract)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006554 (urinary system structure), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
2.43e-62FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_a12c81a99ce4118b7a5f6e81a2224f15p6@Hoxd8
2.43e-62FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_a12c81a99ce4118b7a5f6e81a2224f15p6@Hoxd8
1.46e-57FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_d64cfe14798d1595d0f7eded6b632bd3p8@Hoxd8
1.46e-57FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_d64cfe14798d1595d0f7eded6b632bd3p8@Hoxd8
8.31e-53FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_7fbc0798c3dc9e2d637ba11cbcdddbb3p@chr19:44824107..44824111, -
8.31e-53FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_7fbc0798c3dc9e2d637ba11cbcdddbb3p@chr19:44824107..44824111, -
4.88e-51FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_64db49eadda4cc5c03a23aa46d022eb5p5@Cldn8
4.88e-51FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_64db49eadda4cc5c03a23aa46d022eb5p5@Cldn8
1.53e-48FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_c602e73c4e777eda2f6fa8219c60cd41p@chr10:3291561..3291580, +
1.53e-48FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_c602e73c4e777eda2f6fa8219c60cd41p@chr10:3291561..3291580, +
4.49e-48FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_3f07d6f29a33f9fe995baae9a4a7113cp@chr19:44899724..44899728, +
4.49e-48FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_3f07d6f29a33f9fe995baae9a4a7113cp@chr19:44821149..44821161, +
4.49e-48FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_3f07d6f29a33f9fe995baae9a4a7113cp@chr19:44899724..44899728, +
4.49e-48FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_3f07d6f29a33f9fe995baae9a4a7113cp@chr19:44821149..44821161, +
3.63e-47FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_3cc1c34961c9d6314859e74253cc4276p4@PAX2
3.63e-47FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_3cc1c34961c9d6314859e74253cc4276p4@PAX2
3.57e-46FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_1333039880d639cb6658e733f5257694p@chr8:107148422..107148433, +
3.57e-46FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_1333039880d639cb6658e733f5257694p@chr8:107148422..107148433, +
1.85e-45FFCP PHASE1:Mm9::chr16:88563264..88563271,-#_c57ce8e1d58622dfe6a71533dc5d082c-, p@chr16:88563264..88563271
1.85e-45FFCP PHASE2:Mm9::chr16:88563264..88563271,-#_c57ce8e1d58622dfe6a71533dc5d082cp@chr16:88563264..88563271, -
5.85e-45FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_7a25ea7335878f48db5060ece0cc6233p5@Scp2
5.85e-45FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_7a25ea7335878f48db5060ece0cc6233p5@Scp2
6.9e-45FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_ee463976bccd5893882ee07c083f5b05p@chr10:50689167..50689171, +
6.9e-45FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_ee463976bccd5893882ee07c083f5b05p@chr10:50689167..50689171, +
8.37e-45FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_1607f143c87390884ab70d447c67d1c0p@chr5:24755801..24755819, +
8.37e-45FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_1607f143c87390884ab70d447c67d1c0p@chr5:24755801..24755819, +
1.02e-44FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_434aa9b7a17a47f0122f76800692a609p@chr19:59532611..59532623, +
1.02e-44FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_434aa9b7a17a47f0122f76800692a609p@chr19:59532611..59532623, +
8.96e-44FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_6337f0b88e0da16fcee57dfdf2a61265p1@ENSMUST00000154177
8.96e-44FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_6337f0b88e0da16fcee57dfdf2a61265p1@ENSMUST00000154177
9.94e-44FFCP PHASE2:Mm9::chr12:80169429..80169447,-#_9dba1c14cde225186be3ac67ffb5b826p@chr12:80169429..80169447, -
9.94e-44FFCP PHASE1:Mm9::chr12:80169429..80169447,-#_9dba1c14cde225186be3ac67ffb5b826-, p@chr12:80169429..80169447
2.31e-43FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr7:47891824..47891827, -
2.31e-43FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:39251651..39251690, +
2.31e-43FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:79277411..79277429, +
2.31e-43FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr2:74971765..74971779, -
2.31e-43FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap7@Steap2
2.31e-43FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr8:118959620..118959632, -
2.31e-43FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:50622895..50622905, +
2.31e-43FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr7:47891824..47891827, -
2.31e-43FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr8:118959620..118959632, -
2.31e-43FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap7@Steap2
2.31e-43FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr2:74971765..74971779, -
2.31e-43FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap4@Ros1
2.31e-43FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
2.31e-43FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap2@Nphs1
2.31e-43FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a+, p@chr10:79277411..79277429
2.31e-43FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34a+, p@chr19:17554168..17554181
2.31e-43FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap3@uc009jll.1
2.31e-43FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap2@Nphs1
2.31e-43FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
2.31e-43FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr19:17554168..17554181, +
2.31e-43FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:39251651..39251690, +
2.31e-43FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap4@Ros1
2.31e-43FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap@chr10:50622895..50622905, +
2.31e-43FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_7894bcf1fd1c20f4ceb91cb9cb7bd34ap3@uc009jll.1
1.27e-42FFCP PHASE1:Mm9::chr2:9809451..9809469,-#_6046711f12307f7b0d6fb7bb4f7c69eep6@Gata3
1.27e-42FFCP PHASE2:Mm9::chr2:9809451..9809469,-#_6046711f12307f7b0d6fb7bb4f7c69eep6@Gata3
1.46e-40FFCP PHASE1:Mm9::chr16:88563375..88563386,-#_9b6361a6acb85d9147d345a0d2bd906dp4@Cldn8
1.46e-40FFCP PHASE2:Mm9::chr16:88563375..88563386,-#_9b6361a6acb85d9147d345a0d2bd906dp4@Cldn8
2.85e-40FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_5357703b57c75a3fccfcd665a536a056p@chr11:75720190..75720216, -
2.85e-40FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_5357703b57c75a3fccfcd665a536a056p@chr11:75720190..75720216, -
2.87e-40FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_3dde910fa63c6387639f87c26b61ad9dp7@HOXA10
2.87e-40FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_3dde910fa63c6387639f87c26b61ad9dp7@HOXA10
3.14e-40FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_8d3ad166258755320681f94805c3d083p3@2810008M24Rik
3.14e-40FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_8d3ad166258755320681f94805c3d083p3@2810008M24Rik
3.79e-40FFCP PHASE1:Mm9::chr14:30665533..30665556,-#_302f9cc41fe56275c74f390c5738b58ep@chr14:30665533..30665556, -
3.79e-40FFCP PHASE2:Mm9::chr14:30665533..30665556,-#_302f9cc41fe56275c74f390c5738b58ep@chr14:30665533..30665556, -
6.1e-40FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_f69084a5122dff4c14633a568dcccf71p1@ENSMUST00000143898
6.1e-40FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_f69084a5122dff4c14633a568dcccf71p1@ENSMUST00000143898
3.85e-39FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_c5168f3ef6551e48f5b7630b50e696c5p3@PAX2
3.85e-39FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_c5168f3ef6551e48f5b7630b50e696c5p3@PAX2
3.98e-39FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_79ca84133a03102f14f8c2881cefc76ap4@Nphs1
3.98e-39FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_79ca84133a03102f14f8c2881cefc76ap2@uc009jll.1
3.98e-39FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_79ca84133a03102f14f8c2881cefc76ap@chr10:12353875..12353921, -
3.98e-39FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_79ca84133a03102f14f8c2881cefc76ap2@uc009jll.1
3.98e-39FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_79ca84133a03102f14f8c2881cefc76ap@chr3:154257229..154257241, -
3.98e-39FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_79ca84133a03102f14f8c2881cefc76ap@chr3:154257229..154257241, -
3.98e-39FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_79ca84133a03102f14f8c2881cefc76ap@chr10:12353875..12353921, -
3.98e-39FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_79ca84133a03102f14f8c2881cefc76ap4@Nphs1
4.87e-39FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_889281810f049b6c1f80150e364b0366p4@Pdzk1
4.87e-39FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_889281810f049b6c1f80150e364b0366p4@Pdzk1
5.41e-39FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_694b2f2dc7ffed9f94b7cda05cba0fe9p@chr10:3291584..3291599, +
5.41e-39FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_694b2f2dc7ffed9f94b7cda05cba0fe9p@chr10:3291584..3291599, +
6.27e-39FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_1566aa7f37a6cb02c1cd5abd0b37f789p8@Rgnef
6.27e-39FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_1566aa7f37a6cb02c1cd5abd0b37f789p8@Rgnef
8.15e-39FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_8d4b520358976d6cc336af2d5d263a63p9@Ppt2
8.15e-39FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_8d4b520358976d6cc336af2d5d263a63p9@Ppt2
1.13e-38FFCP PHASE1:Mm9::chr11:75720175..75720186,-#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr11:75720175..75720186, -
1.13e-38FFCP PHASE1:Mm9::chr2:74542882..74542894,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp10@Hoxd8
1.13e-38FFCP PHASE2:Mm9::chr16:26463232..26463247,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp3@Cldn16
1.13e-38FFCP PHASE2:Mm9::chr2:74543143..74543158,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp9@Hoxd8
1.13e-38FFCP PHASE2:Mm9::chr12:94512176..94512186,-#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr12:94512176..94512186, -
1.13e-38FFCP PHASE1:Mm9::chr16:26463232..26463247,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp3@Cldn16
1.13e-38FFCP PHASE1:Mm9::chr10:127286959..127286970,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp3@Rdh19
1.13e-38FFCP PHASE1:Mm9::chr12:31949130..31949155,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr12:31949130..31949155, +
1.13e-38FFCP PHASE2:Mm9::chr16:26463551..26463564,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp1@Cldn16
1.13e-38FFCP PHASE1:Mm9::chr4:120486715..120486721,-#_d3a3ac132ed75aedb6cf9d3ae80c324bp@chr4:120486715..120486721, -
1.13e-38FFCP PHASE1:Mm9::chr6:34129301..34129309,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp3@ENSMUST00000145644
1.13e-38FFCP PHASE1:Mm9::chr16:26463551..26463564,+#_d3a3ac132ed75aedb6cf9d3ae80c324bp1@Cldn16

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