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{{UBERON
{{UBERON
|id=UBERON:0007806
|alt_id=
|name=connecting stalk
|namespace=
|def="A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
|xref=BTO:0004705;;ncithesaurus:Connecting_Stalk
|is_a=UBERON:0000478;;UBERON:0004120
|synonym=
|comment=todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels
|comment=todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005728
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007806
|is_a=UBERON:0000478 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|name=connecting stalk
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0004705;;ncithesaurus:Connecting_Stalk
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:connecting stalk
Namespace:FANTOM
Definition:"A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
Xrefs:
links:

BTO:0004705

ncithesaurus:Connecting_Stalk
Comments:todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0005728(extraembryonic mesoderm)



Children

develops from:UBERON:0002331 (umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
1.1e-59FFCP PHASE2:Hg19::chr8:42248931..42248936,+#_1ac1f7fee605574c13bf5a8740d5fd0fp6@VDAC3
1.1e-59FFCP PHASE2:Hg19::chr3:119279086..119279095,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119279086..119279095, +
1.1e-59FFCP PHASE1:Hg19::chr3:119279086..119279095,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119279086..119279095, +
1.1e-59FFCP PHASE2:Hg19::chr7:45954667..45954675,-#_1ac1f7fee605574c13bf5a8740d5fd0fp42@IGFBP3
1.1e-59FFCP PHASE1:Hg19::chr7:45954667..45954675,-#_1ac1f7fee605574c13bf5a8740d5fd0fp42@IGFBP3
1.1e-59FFCP PHASE1:Hg19::chr11:128154946..128154955,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:128154946..128154955, +
1.1e-59FFCP PHASE2:Hg19::chr7:106363901..106363915,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106363901..106363915, -
1.1e-59FFCP PHASE1:Hg19::chr7:106363901..106363915,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106363901..106363915, -
1.1e-59FFCP PHASE2:Hg19::chr2:65209811..65209818,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:65209811..65209818, +
1.1e-59FFCP PHASE2:Hg19::chr2:148293218..148293252,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148293218..148293252, +
1.1e-59FFCP PHASE2:Hg19::chr1:177159780..177159790,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:177159780..177159790, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957827..76957835,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957827..76957835, +
1.1e-59FFCP PHASE1:Hg19::chr2:65209811..65209818,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:65209811..65209818, +
1.1e-59FFCP PHASE1:Hg19::chr2:148293218..148293252,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148293218..148293252, +
1.1e-59FFCP PHASE1:Hg19::chr1:177159780..177159790,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:177159780..177159790, -
1.1e-59FFCP PHASE2:Hg19::chr9:74995293..74995311,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995293..74995311, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995293..74995311,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995293..74995311, -
1.1e-59FFCP PHASE2:Hg19::chr10:30336924..30336935,-#_1ac1f7fee605574c13bf5a8740d5fd0fp15@KIAA1462
1.1e-59FFCP PHASE2:Hg19::chr6:87324200..87324219,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324200..87324219, +
1.1e-59FFCP PHASE2:Hg19::chr3:45926344..45926350,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926344..45926350, -
1.1e-59FFCP PHASE1:Hg19::chr8:56618992..56618998,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:56618992..56618998, +
1.1e-59FFCP PHASE1:Hg19::chr2:228216568..228216578,+#_1ac1f7fee605574c13bf5a8740d5fd0fp15@MFF
1.1e-59FFCP PHASE2:Hg19::chr1:234765107..234765117,+#_1ac1f7fee605574c13bf5a8740d5fd0fp7@LINC00184
1.1e-59FFCP PHASE1:Hg19::chr20:33691683..33691699,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:33691683..33691699, +
1.1e-59FFCP PHASE1:Hg19::chr1:234765107..234765117,+#_1ac1f7fee605574c13bf5a8740d5fd0fp7@LINC00184
1.1e-59FFCP PHASE1:Hg19::chr17:64034078..64034124,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:64034078..64034124, -
1.1e-59FFCP PHASE2:Hg19::chr19:53511749..53511757,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511749..53511757, -
1.1e-59FFCP PHASE2:Hg19::chr10:111805643..111805655,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:111805643..111805655, -
1.1e-59FFCP PHASE1:Hg19::chr19:53511749..53511757,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511749..53511757, -
1.1e-59FFCP PHASE2:Hg19::chr7:135705379..135705388,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705379..135705388, +
1.1e-59FFCP PHASE2:Hg19::chr21:18179795..18179798,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18179795..18179798, -
1.1e-59FFCP PHASE1:Hg19::chr7:135705379..135705388,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705379..135705388, +
1.1e-59FFCP PHASE1:Hg19::chr21:18179795..18179798,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18179795..18179798, -
1.1e-59FFCP PHASE2:Hg19::chr10:15035404..15035424,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15035404..15035424, -
1.1e-59FFCP PHASE1:Hg19::chr10:120921395..120921406,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921395..120921406, -
1.1e-59FFCP PHASE2:Hg19::chr4:6191002..6191007,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:6191002..6191007, -
1.1e-59FFCP PHASE1:Hg19::chr4:6191002..6191007,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:6191002..6191007, -
1.1e-59FFCP PHASE1:Hg19::chr13:101999642..101999655,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr13:101999642..101999655, -
1.1e-59FFCP PHASE2:Hg19::chr6:138023015..138023024,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:138023015..138023024, -
1.1e-59FFCP PHASE1:Hg19::chr6:138023015..138023024,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:138023015..138023024, -
1.1e-59FFCP PHASE2:Hg19::chr7:142250929..142250940,-#_1ac1f7fee605574c13bf5a8740d5fd0fp3@AF430683, p3@AF430684, p3@AF430685
1.1e-59FFCP PHASE2:Hg19::chr4:167951727..167951732,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167951727..167951732, -
1.1e-59FFCP PHASE2:Hg19::chr21:43934831..43934840,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:43934831..43934840, +
1.1e-59FFCP PHASE2:Hg19::chr10:109197952..109197957,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:109197952..109197957, +
1.1e-59FFCP PHASE1:Hg19::chr7:142250929..142250940,-#_1ac1f7fee605574c13bf5a8740d5fd0fp3@AF430683, p3@AF430684, p3@AF430685
1.1e-59FFCP PHASE1:Hg19::chr4:167951727..167951732,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167951727..167951732, -
1.1e-59FFCP PHASE1:Hg19::chr21:43934831..43934840,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:43934831..43934840, +
1.1e-59FFCP PHASE2:Hg19::chr8:56625901..56625913,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:56625901..56625913, +
1.1e-59FFCP PHASE2:Hg19::chr2:228216588..228216609,+#_1ac1f7fee605574c13bf5a8740d5fd0fp10@MFF
1.1e-59FFCP PHASE1:Hg19::chr3:33024873..33024877,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:33024873..33024877, -
1.1e-59FFCP PHASE2:Hg19::chr19:42682242..42682253,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682242..42682253, -
1.1e-59FFCP PHASE2:Hg19::chr17:64034078..64034124,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:64034078..64034124, -
1.1e-59FFCP PHASE1:Hg19::chr19:42682242..42682253,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682242..42682253, -
1.1e-59FFCP PHASE2:Hg19::chr7:106397632..106397643,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397632..106397643, +
1.1e-59FFCP PHASE1:Hg19::chr7:106397632..106397643,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397632..106397643, +
1.1e-59FFCP PHASE1:Hg19::chr10:31996512..31996530,-#_1ac1f7fee605574c13bf5a8740d5fd0fp5@ENST00000433770
1.1e-59FFCP PHASE2:Hg19::chr19:7599792..7599797,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:7599792..7599797, +
1.1e-59FFCP PHASE1:Hg19::chr19:7599792..7599797,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:7599792..7599797, +
1.1e-59FFCP PHASE2:Hg19::chr9:75002215..75002221,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75002215..75002221, -
1.1e-59FFCP PHASE1:Hg19::chr9:75002215..75002221,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75002215..75002221, -
1.1e-59FFCP PHASE2:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771662..22771675, +
1.1e-59FFCP PHASE2:Hg19::chr19:31524425..31524444,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:31524425..31524444, -
1.1e-59FFCP PHASE1:Hg19::chr2:228216837..228216846,+#_1ac1f7fee605574c13bf5a8740d5fd0fp17@MFF
1.1e-59FFCP PHASE1:Hg19::chr19:31524425..31524444,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:31524425..31524444, -
1.1e-59FFCP PHASE2:Hg19::chr20:39574012..39574015,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:39574012..39574015, +
1.1e-59FFCP PHASE1:Hg19::chr20:39574012..39574015,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:39574012..39574015, +
1.1e-59FFCP PHASE2:Hg19::chr8:12548586..12548602,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:12548586..12548602, -
1.1e-59FFCP PHASE2:Hg19::chr2:148279057..148279078,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148279057..148279078, +
1.1e-59FFCP PHASE2:Hg19::chr1:172807491..172807499,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:172807491..172807499, -
1.1e-59FFCP PHASE1:Hg19::chr8:12548586..12548602,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:12548586..12548602, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957754..76957760,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957754..76957760, +
1.1e-59FFCP PHASE1:Hg19::chr2:148279057..148279078,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148279057..148279078, +
1.1e-59FFCP PHASE1:Hg19::chr1:172807491..172807499,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:172807491..172807499, -
1.1e-59FFCP PHASE1:Hg19::chr14:76957814..76957826,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957814..76957826, +
1.1e-59FFCP PHASE2:Hg19::chr4:167748986..167748989,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167748986..167748989, -
1.1e-59FFCP PHASE1:Hg19::chr4:167748986..167748989,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167748986..167748989, -
1.1e-59FFCP PHASE1:Hg19::chr9:74981579..74981583,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74981579..74981583, -
1.1e-59FFCP PHASE2:Hg19::chr1:207627342..207627349,+#_1ac1f7fee605574c13bf5a8740d5fd0fp3@CR2
1.1e-59FFCP PHASE1:Hg19::chr1:207627342..207627349,+#_1ac1f7fee605574c13bf5a8740d5fd0fp3@CR2
1.1e-59FFCP PHASE1:Hg19::chr8:42248931..42248936,+#_1ac1f7fee605574c13bf5a8740d5fd0fp6@VDAC3
1.1e-59FFCP PHASE2:Hg19::chr19:10987850..10987854,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:10987850..10987854, +
1.1e-59FFCP PHASE1:Hg19::chr19:10987850..10987854,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:10987850..10987854, +
1.1e-59FFCP PHASE1:Hg19::chr11:90524493..90524505,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:90524493..90524505, +
1.1e-59FFCP PHASE1:Hg19::chr12:24770576..24770594,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:24770576..24770594, -
1.1e-59FFCP PHASE2:Hg19::chr9:74981579..74981583,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74981579..74981583, -
1.1e-59FFCP PHASE2:Hg19::chr6:484706..484722,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:484706..484722, +
1.1e-59FFCP PHASE2:Hg19::chr4:167982726..167982736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167982726..167982736, -
1.1e-59FFCP PHASE1:Hg19::chr6:484706..484722,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:484706..484722, +
1.1e-59FFCP PHASE1:Hg19::chr4:167982726..167982736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167982726..167982736, -
1.1e-59FFCP PHASE2:Hg19::chr8:59790413..59790418,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:59790413..59790418, -
1.1e-59FFCP PHASE1:Hg19::chr6:87324200..87324219,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324200..87324219, +
1.1e-59FFCP PHASE1:Hg19::chr3:45926344..45926350,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926344..45926350, -
1.1e-59FFCP PHASE2:Hg19::chr10:61574767..61574776,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:61574767..61574776, -
1.1e-59FFCP PHASE1:Hg19::chr17:1985278..1985290,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:1985278..1985290, -

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