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(Created page with "{{UBERON |id=UBERON:0009616 |name=presumptive midbrain |namespace= |def= |xref=ZFA:0000148 |is_a=UBERON:0006598 |synonym="presumptive mesencephalon" EXACT [ZFA:0000148]...")
 
 
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{{UBERON
 
{{UBERON
|id=UBERON:0009616
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|alt_id=
|name=presumptive midbrain
 
|namespace=
 
|def=
 
|xref=ZFA:0000148
 
|is_a=UBERON:0006598
 
|synonym="presumptive mesencephalon" EXACT [ZFA:0000148]
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
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|def=
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
|develops_from=UBERON:0007284
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|develops_from=UBERON:0003080;;UBERON:0010286
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
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|id=UBERON:0009616
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|is_a=UBERON:0006598
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|is_obsolete=
 
|located_in=
 
|located_in=
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|name=presumptive midbrain
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|namespace=FANTOM
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|obo_creation_date=
 
|part_of=UBERON:0006238
 
|part_of=UBERON:0006238
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|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
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|subset=
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|synonym="presumptive mesencephalon" EXACT [ZFA:0000148]
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|union_of=
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|xref=TAO:0000148;;ZFA:0000148
 
}}
 
}}

Latest revision as of 09:05, 12 September 2014

Name:presumptive midbrain
Namespace:FANTOM
Xrefs:
links:

TAO:0000148

ZFA:0000148
Synonyms: "presumptive mesencephalon" EXACT [ZFA:0000148]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0006598(presumptive structure)
develops_from:UBERON:0003080(anterior neural tube),UBERON:0010286(midbrain neural tube)
part_of:UBERON:0006238(future brain)



Children

develops from:UBERON:0001891 (midbrain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009616 (presumptive midbrain), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_baabf0186a421fdcb44ed6f1327e3b1bp@chr10:68718064..68718067, -
9.37e-99FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_baabf0186a421fdcb44ed6f1327e3b1bp@chr10:68718064..68718067, -
9.37e-99FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_baabf0186a421fdcb44ed6f1327e3b1bp5@C1orf130
9.37e-99FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_baabf0186a421fdcb44ed6f1327e3b1bp59@ANK3
9.37e-99FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_baabf0186a421fdcb44ed6f1327e3b1bp@chr9:139916913..139916917, +
9.37e-99FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_baabf0186a421fdcb44ed6f1327e3b1bp@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_baabf0186a421fdcb44ed6f1327e3b1bp5@C1orf130
9.37e-99FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_baabf0186a421fdcb44ed6f1327e3b1bp59@ANK3
9.37e-99FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_baabf0186a421fdcb44ed6f1327e3b1bp@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_baabf0186a421fdcb44ed6f1327e3b1b+, p@chr9:139916913..139916917
2.55e-98FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_4a9ed77780e042663876961ce40f7681p@chr5:57935348..57935354, -
2.55e-98FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_4a9ed77780e042663876961ce40f7681p@chr1:65776926..65776928, +
2.55e-98FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_4a9ed77780e042663876961ce40f7681p@chr18:74702556..74702558, -
2.55e-98FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_4a9ed77780e042663876961ce40f7681p@chr1:65776926..65776928, +
2.55e-98FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_4a9ed77780e042663876961ce40f7681p@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_4a9ed77780e042663876961ce40f7681p@chr5:57935348..57935354, -
1.23e-66FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_fd15e9aaad25228b490d3fa3283124f1p@chr10:22967066..22967069, -
1.23e-66FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_fd15e9aaad25228b490d3fa3283124f1p6@PKD1L2
1.23e-66FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_fd15e9aaad25228b490d3fa3283124f1p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_fd15e9aaad25228b490d3fa3283124f1p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_fd15e9aaad25228b490d3fa3283124f1p@chr10:22967066..22967069, -
1.23e-66FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_fd15e9aaad25228b490d3fa3283124f1p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_fd15e9aaad25228b490d3fa3283124f1p6@PKD1L2
1.23e-66FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_fd15e9aaad25228b490d3fa3283124f1p@chr8:53312058..53312067, -
2.39e-66FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_254456d6fbe823ff210112ff47d89db8p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_254456d6fbe823ff210112ff47d89db8p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_254456d6fbe823ff210112ff47d89db8p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_254456d6fbe823ff210112ff47d89db8p@chr14:95727527..95727529, -
2.39e-66FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_254456d6fbe823ff210112ff47d89db8p@chr14:95727527..95727529, -
2.39e-66FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_254456d6fbe823ff210112ff47d89db8p@chr11:7340444..7340448, +
4.66e-66FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr14:105166013..105166017, +
4.66e-66FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr13:43872447..43872452, -
4.66e-66FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr14:105166013..105166017, +
4.66e-66FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_8c3dd27703dc4ece4fe2acfddebe88b3p8@OMG
4.66e-66FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr9:79516011..79516022, -
4.66e-66FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr13:34922094..34922105, +
4.66e-66FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr13:34922094..34922105, +
4.66e-66FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_8c3dd27703dc4ece4fe2acfddebe88b3p8@OMG
4.66e-66FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr9:79516011..79516022, -
1.46e-50FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_ff95a1f8bb0937ba3280c131f5cb7751p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_ff95a1f8bb0937ba3280c131f5cb7751p@chrX:28627633..28627642, +
1.46e-50FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_ff95a1f8bb0937ba3280c131f5cb7751p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_ff95a1f8bb0937ba3280c131f5cb7751p@chrX:28627633..28627642, +
3.99e-50FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_7547c220bade4025ad634ea0d90eafe3p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_7547c220bade4025ad634ea0d90eafe3p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_7547c220bade4025ad634ea0d90eafe3+, p@chr3:50717966..50717971
3.99e-50FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_7547c220bade4025ad634ea0d90eafe3p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_7547c220bade4025ad634ea0d90eafe3p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_7547c220bade4025ad634ea0d90eafe3p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_7547c220bade4025ad634ea0d90eafe3p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_7547c220bade4025ad634ea0d90eafe3p@chr3:50717966..50717971, +
6.58e-50FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_436031363aab94f31bc1cde892493cba-, p@chr1:161275096..161275109
6.58e-50FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_436031363aab94f31bc1cde892493cbap@chr18:26665245..26665249, +
6.58e-50FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_436031363aab94f31bc1cde892493cbap@chr17:70910145..70910148, -
6.58e-50FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_436031363aab94f31bc1cde892493cbap21@PLEKHG1
6.58e-50FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_436031363aab94f31bc1cde892493cbap@chr17:3479944..3479947, -
6.58e-50FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_436031363aab94f31bc1cde892493cbap10@KCNJ10
6.58e-50FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_436031363aab94f31bc1cde892493cbap2@LOC285796
6.58e-50FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_436031363aab94f31bc1cde892493cbap@chr9:19515907..19515918, -
6.58e-50FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_436031363aab94f31bc1cde892493cbap@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_436031363aab94f31bc1cde892493cba-, p@chr17:3479944..3479947
6.58e-50FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_436031363aab94f31bc1cde892493cbap2@LOC285796
6.58e-50FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_436031363aab94f31bc1cde892493cbap21@PLEKHG1
6.58e-50FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_436031363aab94f31bc1cde892493cbap@chr17:70910145..70910148, -
6.58e-50FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_436031363aab94f31bc1cde892493cbap@chr9:19515907..19515918, -
6.58e-50FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_436031363aab94f31bc1cde892493cbap@chr22:48980473..48980481, +
6.58e-50FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_436031363aab94f31bc1cde892493cbap@chr1:161275096..161275109, -
6.58e-50FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_436031363aab94f31bc1cde892493cbap@chr18:26665245..26665249, +
6.58e-50FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_436031363aab94f31bc1cde892493cbap10@KCNJ10
6.58e-50FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_436031363aab94f31bc1cde892493cbap@chr9:137240632..137240635, +
6.58e-50FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_436031363aab94f31bc1cde892493cbap@chr9:137240632..137240635, +
2.38e-43FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_667cd3f3268da96b304f83b7938ea2c5p@chr19:40804786..40804795, -
2.38e-43FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_667cd3f3268da96b304f83b7938ea2c5p@chr19:40804786..40804795, -
6.62e-41FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_d6377f7a9b81a3747339baaa4db52274p4@C5orf64
6.62e-41FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_d6377f7a9b81a3747339baaa4db52274p@chr4:139891920..139891924, -
6.62e-41FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_d6377f7a9b81a3747339baaa4db52274p@chr4:139891920..139891924, -
6.62e-41FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_d6377f7a9b81a3747339baaa4db52274p4@C5orf64
9.91e-41FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_e13d96404ea38d08a9c831fa3c0bbea8p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_e13d96404ea38d08a9c831fa3c0bbea8p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_e13d96404ea38d08a9c831fa3c0bbea8p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_e13d96404ea38d08a9c831fa3c0bbea8p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_e13d96404ea38d08a9c831fa3c0bbea8p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_e13d96404ea38d08a9c831fa3c0bbea8p@chr5:152017019..152017026, +
1.48e-40FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_be5a84b172489f72980baf05cce6c66ep@chr2:135170207..135170218, +
1.48e-40FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_be5a84b172489f72980baf05cce6c66ep@chr1:161275238..161275250, -
1.48e-40FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_be5a84b172489f72980baf05cce6c66e-, p@chr9:139911084..139911102
1.48e-40FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_be5a84b172489f72980baf05cce6c66ep@chr17:71046459..71046462, -
1.48e-40FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_be5a84b172489f72980baf05cce6c66ep@chr1:161275238..161275250, -
1.48e-40FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_be5a84b172489f72980baf05cce6c66ep@chr17:71046459..71046462, -
1.48e-40FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_be5a84b172489f72980baf05cce6c66ep10@CELSR2
1.48e-40FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_be5a84b172489f72980baf05cce6c66ep10@CELSR2
1.48e-40FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_be5a84b172489f72980baf05cce6c66ep@chr9:139911084..139911102, -
1.48e-40FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_be5a84b172489f72980baf05cce6c66ep@chr2:135170207..135170218, +
2.21e-40FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_3fcf60a9ff42833eea5c7b1c18a0982ap19@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr9:19513297..19513309,-#_3fcf60a9ff42833eea5c7b1c18a0982ap4@SLC24A2
2.21e-40FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_3fcf60a9ff42833eea5c7b1c18a0982ap20@ADARB2
2.21e-40FFCP PHASE1:Hg19::chr8:27522642..27522647,+#_3fcf60a9ff42833eea5c7b1c18a0982ap@chr8:27522642..27522647, +
2.21e-40FFCP PHASE2:Hg19::chr8:27522642..27522647,+#_3fcf60a9ff42833eea5c7b1c18a0982ap@chr8:27522642..27522647, +
2.21e-40FFCP PHASE2:Hg19::chrX:103046993..103046994,+#_3fcf60a9ff42833eea5c7b1c18a0982ap@chrX:103046993..103046994, +