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(Created page with "{{UBERON |id=UBERON:0009751 |name=cardiac mesenchyme |namespace= |def="the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interl...")
 
 
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{{UBERON
 
{{UBERON
|id=UBERON:0009751
+
|alt_id=
|name=cardiac mesenchyme
 
|namespace=
 
|def="the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures" [MP:0011264]
 
|xref=EHDAA2:0004162
 
|is_a=UBERON:0000477;;UBERON:0003104
 
|synonym=
 
 
|comment=Editor note: decide whether to merge with cardiac mesoderm. Check start/end stages
 
|comment=Editor note: decide whether to merge with cardiac mesoderm. Check start/end stages
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures" [MP:0011264]
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0009751
 +
|is_a=UBERON:0000477 ;;UBERON:0003104 ;;UBERON:0004120
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=cardiac mesenchyme
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=UBERON:0000948
 
|part_of=UBERON:0000948
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 +
|subset=
 +
|synonym=
 +
|union_of=
 +
|xref=EHDAA2:0004162
 
}}
 
}}

Latest revision as of 09:06, 12 September 2014

Name:cardiac mesenchyme
Namespace:FANTOM
Definition:"the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures" [MP:0011264]
Xrefs:
links:
EHDAA2:0004162
Comments:Editor note: decide whether to merge with cardiac mesoderm. Check start/end stages

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0000948(heart)



Children

is a:UBERON:0002062 (endocardial cushion)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009751 (cardiac mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.41e-147FFCP PHASE2:Hg19::chr7:25815812..25815822,-#_005e3494c56fbd74fdec5d77e95a20e8p@chr7:25815812..25815822, -
5.41e-147FFCP PHASE1:Hg19::chr7:25815812..25815822,-#_005e3494c56fbd74fdec5d77e95a20e8p@chr7:25815812..25815822, -
8.98e-131FFCP PHASE1:Hg19::chr12:3373147..3373149,-#_d32306bc87e3793e8d0ab035916d0986p@chr12:3373147..3373149, -
8.98e-131FFCP PHASE2:Hg19::chr12:3373147..3373149,-#_d32306bc87e3793e8d0ab035916d0986p@chr12:3373147..3373149, -
7.78e-118FFCP PHASE2:Hg19::chr1:20355975..20355980,-#_e3f540219bc95133950165fe0bce34dfp@chr1:20355975..20355980, -
7.78e-118FFCP PHASE1:Hg19::chr1:20355975..20355980,-#_e3f540219bc95133950165fe0bce34dfp@chr1:20355975..20355980, -
5.69e-99FFCP PHASE2:Hg19::chr1:237331032..237331036,+#_bd6a0b7745366a2db00488b5c1cacd7bp@chr1:237331032..237331036, +
5.69e-99FFCP PHASE1:Hg19::chr1:237331032..237331036,+#_bd6a0b7745366a2db00488b5c1cacd7bp@chr1:237331032..237331036, +
1.52e-87FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_a5ea95df91651720bb80d697e6628440p9@NPPA
1.52e-87FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_a5ea95df91651720bb80d697e6628440p9@NPPA
1.52e-87FFCP PHASE2:Hg19::chr6:6739548..6739577,-#_a5ea95df91651720bb80d697e6628440p@chr6:6739548..6739577, -
1.52e-87FFCP PHASE2:Hg19::chr2:18116344..18116353,+#_a5ea95df91651720bb80d697e6628440p@chr2:18116344..18116353, +
1.52e-87FFCP PHASE1:Hg19::chr6:6739548..6739577,-#_a5ea95df91651720bb80d697e6628440p@chr6:6739548..6739577, -
1.52e-87FFCP PHASE1:Hg19::chr2:18116344..18116353,+#_a5ea95df91651720bb80d697e6628440p@chr2:18116344..18116353, +
7.21e-85FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_67d18c7fbd601550d2f8147214968199p@chrX:112324334..112324339, -
7.21e-85FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_67d18c7fbd601550d2f8147214968199p@chrX:112324334..112324339, -
1.71e-84FFCP PHASE2:Hg19::chr2:220491902..220491915,+#_67bcac21a6fddc5d2409b47b1dcb3c85p11@SLC4A3
1.71e-84FFCP PHASE1:Hg19::chr2:220491902..220491915,+#_67bcac21a6fddc5d2409b47b1dcb3c85p11@SLC4A3
2.27e-84FFCP PHASE2:Hg19::chr2:179533457..179533461,-#_bbab6ca6e7ecdb882015743ecbccff9dp@chr2:179533457..179533461, -
2.27e-84FFCP PHASE1:Hg19::chr2:179533457..179533461,-#_bbab6ca6e7ecdb882015743ecbccff9dp@chr2:179533457..179533461, -
3.03e-84FFCP PHASE2:Hg19::chr2:179398102..179398109,-#_e51cf2c094c83ef3df262ede9a2b9f22p@chr2:179398102..179398109, -
3.03e-84FFCP PHASE1:Hg19::chr2:179398102..179398109,-#_e51cf2c094c83ef3df262ede9a2b9f22p@chr2:179398102..179398109, -
7.81e-75FFCP PHASE2:Hg19::chr5:123739302..123739319,-#_b5882a5b856c990bef803181b7111e9bp@chr5:123739302..123739319, -
7.81e-75FFCP PHASE1:Hg19::chr5:123739302..123739319,-#_b5882a5b856c990bef803181b7111e9bp@chr5:123739302..123739319, -
1.01e-74FFCP PHASE1:Hg19::chr18:64271475..64271484,-#_46f791049d98a40977a0e01ab58d0740p6@CDH19
1.01e-74FFCP PHASE2:Hg19::chr18:64271475..64271484,-#_46f791049d98a40977a0e01ab58d0740p6@CDH19
1.29e-74FFCP PHASE2:Hg19::chr7:35286774..35286778,-#_7b6ef860fe74455804abe90520e16160p@chr7:35286774..35286778, -
1.29e-74FFCP PHASE1:Hg19::chr7:35286774..35286778,-#_7b6ef860fe74455804abe90520e16160p@chr7:35286774..35286778, -
1.66e-74FFCP PHASE2:Hg19::chr6:129355052..129355056,+#_249d4446eccd19a72e62a9aa5b6fb20dp@chr6:129355052..129355056, +
1.66e-74FFCP PHASE1:Hg19::chr6:129355052..129355056,+#_249d4446eccd19a72e62a9aa5b6fb20dp@chr6:129355052..129355056, +
2.75e-74FFCP PHASE2:Hg19::chr3:16940540..16940554,+#_5d6c3e81f2d9a7ca68e3ca7ecfe9a202p@chr3:16940540..16940554, +
2.75e-74FFCP PHASE1:Hg19::chr3:16940540..16940554,+#_5d6c3e81f2d9a7ca68e3ca7ecfe9a202p@chr3:16940540..16940554, +
3.54e-74FFCP PHASE2:Hg19::chr1:201328779..201328797,-#_32d337e07db1924d67ee8da67bb69a51p@chr1:201328779..201328797, -
3.54e-74FFCP PHASE2:Hg19::chr20:33565465..33565475,+#_32d337e07db1924d67ee8da67bb69a51p9@MYH7B
3.54e-74FFCP PHASE1:Hg19::chr1:201328779..201328797,-#_32d337e07db1924d67ee8da67bb69a51p@chr1:201328779..201328797, -
3.54e-74FFCP PHASE2:Hg19::chr3:131523446..131523459,-#_32d337e07db1924d67ee8da67bb69a51p@chr3:131523446..131523459, -
3.54e-74FFCP PHASE1:Hg19::chr20:33565465..33565475,+#_32d337e07db1924d67ee8da67bb69a51p9@MYH7B
3.54e-74FFCP PHASE1:Hg19::chr3:131523446..131523459,-#_32d337e07db1924d67ee8da67bb69a51p@chr3:131523446..131523459, -
3.54e-74FFCP PHASE2:Hg19::chr19:55661803..55661807,-#_32d337e07db1924d67ee8da67bb69a51p@chr19:55661803..55661807, -
3.54e-74FFCP PHASE1:Hg19::chr19:55661803..55661807,-#_32d337e07db1924d67ee8da67bb69a51p@chr19:55661803..55661807, -
5.84e-74FFCP PHASE2:Hg19::chr6:36812121..36812130,-#_f3e170e45c179e9c56b21a02c2afbf14p@chr6:36812121..36812130, -
5.84e-74FFCP PHASE1:Hg19::chr6:36812121..36812130,-#_f3e170e45c179e9c56b21a02c2afbf14p@chr6:36812121..36812130, -
7.51e-74FFCP PHASE2:Hg19::chr14:105939326..105939337,+#_dc34da97a0385a65c731f8bed13d6b09p16@CRIP2
7.51e-74FFCP PHASE1:Hg19::chr14:105939326..105939337,+#_dc34da97a0385a65c731f8bed13d6b09p16@CRIP2
9.64e-74FFCP PHASE2:Hg19::chr1:206838422..206838456,+#_75fdfccdbe720484469c239d8df45314p@chr1:206838422..206838456, +
9.64e-74FFCP PHASE1:Hg19::chr1:206838422..206838456,+#_75fdfccdbe720484469c239d8df45314p@chr1:206838422..206838456, +
1.24e-73FFCP PHASE1:Hg19::chr1:231983543..231983554,-#_c81443c9ba928586d238e2743ee50477p@chr1:231983543..231983554, -
1.24e-73FFCP PHASE2:Hg19::chr1:231983543..231983554,-#_c81443c9ba928586d238e2743ee50477p@chr1:231983543..231983554, -
1.54e-66FFCP PHASE2:Hg19::chr1:201328328..201328343,-#_21f51e4eb706a630744ff4e42c1af668p@chr1:201328328..201328343, -
1.54e-66FFCP PHASE1:Hg19::chr1:201328328..201328343,-#_21f51e4eb706a630744ff4e42c1af668p@chr1:201328328..201328343, -
1.71e-66FFCP PHASE1:Hg19::chr1:237214095..237214115,+#_4577feb8d8cd59d40a9a70cd2c82653ap@chr1:237214095..237214115, +
1.71e-66FFCP PHASE1:Hg19::chr11:47367243..47367257,-#_4577feb8d8cd59d40a9a70cd2c82653ap@chr11:47367243..47367257, -
1.71e-66FFCP PHASE2:Hg19::chr11:47367243..47367257,-#_4577feb8d8cd59d40a9a70cd2c82653ap@chr11:47367243..47367257, -
1.71e-66FFCP PHASE2:Hg19::chr1:237214095..237214115,+#_4577feb8d8cd59d40a9a70cd2c82653ap@chr1:237214095..237214115, +
2.39e-66FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_ca7fa453227222ca81c7d3ad4c603461p@chr5:99390735..99390743, -
2.39e-66FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_ca7fa453227222ca81c7d3ad4c603461p@chr10:92678409..92678410, -
2.39e-66FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_ca7fa453227222ca81c7d3ad4c603461p@chr10:92678409..92678410, -
2.39e-66FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_ca7fa453227222ca81c7d3ad4c603461p@chr15:86272097..86272099, +
2.39e-66FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_ca7fa453227222ca81c7d3ad4c603461p@chr15:86272097..86272099, +
2.39e-66FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_ca7fa453227222ca81c7d3ad4c603461p@chr5:99390735..99390743, -
2.4e-66FFCP PHASE1:Hg19::chr1:237996521..237996532,+#_820606fb1cd0307300ff90d9fee9ecc1p@chr1:237996521..237996532, +
2.4e-66FFCP PHASE1:Hg19::chr12:114886577..114886589,-#_820606fb1cd0307300ff90d9fee9ecc1p@chr12:114886577..114886589, -
2.4e-66FFCP PHASE2:Hg19::chr12:114886577..114886589,-#_820606fb1cd0307300ff90d9fee9ecc1p@chr12:114886577..114886589, -
2.4e-66FFCP PHASE1:Hg19::chr12:4735761..4735787,-#_820606fb1cd0307300ff90d9fee9ecc1p@chr12:4735761..4735787, -
2.4e-66FFCP PHASE2:Hg19::chr2:159976509..159976519,+#_820606fb1cd0307300ff90d9fee9ecc1p@chr2:159976509..159976519, +
2.4e-66FFCP PHASE2:Hg19::chr12:4735761..4735787,-#_820606fb1cd0307300ff90d9fee9ecc1p@chr12:4735761..4735787, -
2.4e-66FFCP PHASE1:Hg19::chr2:159976509..159976519,+#_820606fb1cd0307300ff90d9fee9ecc1p@chr2:159976509..159976519, +
2.4e-66FFCP PHASE2:Hg19::chr1:237996521..237996532,+#_820606fb1cd0307300ff90d9fee9ecc1p@chr1:237996521..237996532, +
2.41e-66FFCP PHASE2:Hg19::chr1:237207955..237207959,+#_d0ede6bccfdf6197b691cddf8db7f6e9p@chr1:237207955..237207959, +
2.41e-66FFCP PHASE1:Hg19::chr1:237207955..237207959,+#_d0ede6bccfdf6197b691cddf8db7f6e9p@chr1:237207955..237207959, +
2.41e-66FFCP PHASE2:Hg19::chr2:40480968..40480972,-#_d0ede6bccfdf6197b691cddf8db7f6e9p@chr2:40480968..40480972, -
2.41e-66FFCP PHASE1:Hg19::chr2:40480968..40480972,-#_d0ede6bccfdf6197b691cddf8db7f6e9p@chr2:40480968..40480972, -
3.01e-66FFCP PHASE1:Hg19::chr4:62999501..62999517,+#_c13930c80f41a0b6d2af135de456404bp@chr4:62999501..62999517, +
3.01e-66FFCP PHASE2:Hg19::chr4:62999501..62999517,+#_c13930c80f41a0b6d2af135de456404bp@chr4:62999501..62999517, +
3.35e-66FFCP PHASE2:Hg19::chr7:35253487..35253489,-#_a76d139f0b207eb1cf08665199019453p@chr7:35253487..35253489, -
3.35e-66FFCP PHASE1:Hg19::chr5:65736120..65736128,-#_a76d139f0b207eb1cf08665199019453p@chr5:65736120..65736128, -
3.35e-66FFCP PHASE2:Hg19::chr7:44178491..44178498,-#_a76d139f0b207eb1cf08665199019453p@chr7:44178491..44178498, -
3.35e-66FFCP PHASE1:Hg19::chr7:35253487..35253489,-#_a76d139f0b207eb1cf08665199019453p@chr7:35253487..35253489, -
3.35e-66FFCP PHASE2:Hg19::chr9:38650254..38650266,+#_a76d139f0b207eb1cf08665199019453p@chr9:38650254..38650266, +
3.35e-66FFCP PHASE1:Hg19::chr7:44178491..44178498,-#_a76d139f0b207eb1cf08665199019453p@chr7:44178491..44178498, -
3.35e-66FFCP PHASE1:Hg19::chr9:38650254..38650266,+#_a76d139f0b207eb1cf08665199019453p@chr9:38650254..38650266, +
3.35e-66FFCP PHASE2:Hg19::chr1:11905830..11905839,-#_a76d139f0b207eb1cf08665199019453p@chr1:11905830..11905839, -
3.35e-66FFCP PHASE2:Hg19::chr7:44179972..44179982,-#_a76d139f0b207eb1cf08665199019453p2@MYL7
3.35e-66FFCP PHASE1:Hg19::chr1:11905830..11905839,-#_a76d139f0b207eb1cf08665199019453p@chr1:11905830..11905839, -
3.35e-66FFCP PHASE1:Hg19::chr7:44179972..44179982,-#_a76d139f0b207eb1cf08665199019453p2@MYL7
3.35e-66FFCP PHASE2:Hg19::chr5:65736120..65736128,-#_a76d139f0b207eb1cf08665199019453p@chr5:65736120..65736128, -
4.68e-66FFCP PHASE2:Hg19::chr10:112524543..112524547,+#_ce2b50861f1ea07b210f0d91a181f1d5p@chr10:112524543..112524547, +
4.68e-66FFCP PHASE2:Hg19::chr7:44180643..44180652,-#_ce2b50861f1ea07b210f0d91a181f1d5p3@MYL7
4.68e-66FFCP PHASE1:Hg19::chr10:112524543..112524547,+#_ce2b50861f1ea07b210f0d91a181f1d5p@chr10:112524543..112524547, +
4.68e-66FFCP PHASE1:Hg19::chr7:44180643..44180652,-#_ce2b50861f1ea07b210f0d91a181f1d5p3@MYL7
5.88e-66FFCP PHASE2:Hg19::chr6:36812225..36812238,-#_f9446d473ff1632789d18389b6dde9d4p@chr6:36812225..36812238, -
5.88e-66FFCP PHASE1:Hg19::chr6:36812225..36812238,-#_f9446d473ff1632789d18389b6dde9d4p@chr6:36812225..36812238, -
6.53e-66FFCP PHASE2:Hg19::chr4:62999459..62999462,+#_3f26c75fe5c7c7c8d15ba352b480037cp@chr4:62999459..62999462, +
6.53e-66FFCP PHASE1:Hg19::chr4:62999459..62999462,+#_3f26c75fe5c7c7c8d15ba352b480037cp@chr4:62999459..62999462, +
6.53e-66FFCP PHASE2:Hg19::chr2:168104544..168104551,+#_3f26c75fe5c7c7c8d15ba352b480037cp52@XIRP2
6.53e-66FFCP PHASE1:Hg19::chr2:168104544..168104551,+#_3f26c75fe5c7c7c8d15ba352b480037cp52@XIRP2
1.15e-65FFCP PHASE2:Hg19::chr10:127569398..127569410,-#_3e204dc3ee11abcddd44f08372aff09cp5@DHX32
1.15e-65FFCP PHASE2:Hg19::chr7:123302841..123302854,+#_3e204dc3ee11abcddd44f08372aff09cp@chr7:123302841..123302854, +
1.15e-65FFCP PHASE1:Hg19::chr7:123302841..123302854,+#_3e204dc3ee11abcddd44f08372aff09cp@chr7:123302841..123302854, +
1.15e-65FFCP PHASE1:Hg19::chr10:127569398..127569410,-#_3e204dc3ee11abcddd44f08372aff09cp5@DHX32