Personal tools

UBERON:0010130: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0010130
|alt_id=
|name=autopod plate
|namespace=
|def="the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. hand, foot, paw)" [MP:0004576]
|xref=
|is_a=UBERON:0002050
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. hand, foot, paw)" [http://sourceforge.net/tracker/?func
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0004347
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010130
|is_a=UBERON:0002050
|is_obsolete=
|located_in=
|located_in=
|name=autopod plate
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="limb plate" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 18:08, 12 September 2014

Name:autopod plate
Namespace:FANTOM
Definition:"the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. hand, foot, paw)" [http://sourceforge.net/tracker/?func
Synonyms: "limb plate" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002050(embryonic structure)
develops_from:UBERON:0004347(limb bud)



Children

is a:UBERON:0006871 (footplate),UBERON:0006875 (handplate)
develops from:UBERON:0002470 (autopod region)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010130 (autopod plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results