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(Created page with "{{UBERON |id=UBERON:0010363 |name=endochondral element |namespace= |def="A skeletal element that has the potential to participate in endochondral ossification, and may par...")
 
 
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{{UBERON
 
{{UBERON
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|id=UBERON:0010363
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|alt_id=
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|name=endochondral element
 
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|namespace=
 
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|def="A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:0000139]
 
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|xref=VSAO:0000139;;XAO:0004017;;ZFA:0005620
 
−
|is_a=UBERON:0004765
 
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|synonym="endochondral replacement element" EXACT [VSAO:0000139]
 
 
|comment=
 
|comment=
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|alt_id=
 
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|disjoint_from=
 
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|union_of=
 
 
|created_by=
 
|created_by=
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|obo_creation_date=
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|def="A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:0000139]
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|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0010363
 +
|is_a=UBERON:0004765
 +
|is_obsolete=
 
|located_in=
 
|located_in=
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|name=endochondral element
 +
|namespace=FANTOM
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|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
−
|is_obsolete=
+
|subset=
−
|preceded_by=
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|synonym="endochondral replacement element" EXACT [VSAO:0000139]
 +
|union_of=
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|xref=VSAO:0000139;;XAO:0004017;;ZFA:0005620
 
}}
 
}}

Latest revision as of 09:09, 12 September 2014

Name:endochondral element
Namespace:FANTOM
Definition:"A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:0000139]
Xrefs:
links:

VSAO:0000139
XAO:0004017

ZFA:0005620
Synonyms: "endochondral replacement element" EXACT [VSAO:0000139]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0004765(skeletal element)



Children

is a:UBERON:0002513 (endochondral bone),UBERON:0015005 (vertebra endochondral element),UBERON:0015061 (limb endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010363 (endochondral element), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_cc1835f878c7a62de801caaddcdd3e52p26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_cc1835f878c7a62de801caaddcdd3e52p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_1c4674be02d6160a113f72bdfa1033c6p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_1c4674be02d6160a113f72bdfa1033c6p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_1c4674be02d6160a113f72bdfa1033c6p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_1c4674be02d6160a113f72bdfa1033c6p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_1c4674be02d6160a113f72bdfa1033c6p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_1c4674be02d6160a113f72bdfa1033c6p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_1c24903dd1cdd6ca6e7486fc980abcafp@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_1c24903dd1cdd6ca6e7486fc980abcafp@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_5037825cdd3e3a9faa2782fa03be0c74p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_5037825cdd3e3a9faa2782fa03be0c74p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_6a3a08bbcf5c1e06e48c4af03654f839+, p@chr6:4490674..4490679
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_6a3a08bbcf5c1e06e48c4af03654f839p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_6a3a08bbcf5c1e06e48c4af03654f839p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr16:24096441..24096449, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_b8a4a87b614efff82dcbbd1d8069466bp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_b8a4a87b614efff82dcbbd1d8069466bp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_1ae926c3e647f528e92d9ebf3e553d3ep@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_1ae926c3e647f528e92d9ebf3e553d3ep@chr6:51525869..51525891, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_27f4211e31b4084a9afd70c10975e5eap3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_27f4211e31b4084a9afd70c10975e5eap3@Asb16
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_36f3e923d6f4665cbd299bd56e3d1a1dp@chr7:133604286..133604297, -
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_36f3e923d6f4665cbd299bd56e3d1a1dp@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_f0db411f69762ed63f30f7904cf5d97ap5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_f0db411f69762ed63f30f7904cf5d97ap5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_e79333a7baca3374960b1429a1aa0332p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_e79333a7baca3374960b1429a1aa0332p2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_edb5fde7bb4794d5538c85fdb6d800afp3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_edb5fde7bb4794d5538c85fdb6d800afp3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_8bb3b6aebbafd232dddf4f1d03bddc70p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_8bb3b6aebbafd232dddf4f1d03bddc70p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_8bb3b6aebbafd232dddf4f1d03bddc70p2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_8bb3b6aebbafd232dddf4f1d03bddc70p@chr1:166815111..166815121, -
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_f17e371edae8588868eadd8df06ffdd8+, p@chr11:75409652..75409664
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_f17e371edae8588868eadd8df06ffdd8p4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_f17e371edae8588868eadd8df06ffdd8p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_f17e371edae8588868eadd8df06ffdd8p4@Lipc
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_4a4b4a2e6a678747002d7eda6dca48d8p6@Sp7
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_4a4b4a2e6a678747002d7eda6dca48d8p6@Sp7
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_496fb7dfcfbc267273080e5897b664a5p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_496fb7dfcfbc267273080e5897b664a5+, p@chr18:76271498..76271508
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_496fb7dfcfbc267273080e5897b664a5p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_496fb7dfcfbc267273080e5897b664a5p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_cb7bf9138ff75b8a0a27f4f0cefdef4dp@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_cb7bf9138ff75b8a0a27f4f0cefdef4dp@chr2:32482387..32482399, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_cbe72835984f3fe9fa15152133617bb9p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_cbe72835984f3fe9fa15152133617bb9p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_cbe72835984f3fe9fa15152133617bb9p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_cbe72835984f3fe9fa15152133617bb9p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_a9fa07c9ae999abe64b6247ee235235ep@chr7:133590998..133591009, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_a9fa07c9ae999abe64b6247ee235235ep@chr7:133590998..133591009, -
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_db684f9f56b7c4fbbf0d63bc0ed78f63p2@Myoz3
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_db684f9f56b7c4fbbf0d63bc0ed78f63p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_9a907da47ea01e685790b59a57028b40p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_9a907da47ea01e685790b59a57028b40p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_dc8467da4e48af155c6ee3e8f3e14ad2-, p@chr1:57155729..57155740
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_dc8467da4e48af155c6ee3e8f3e14ad2p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_48983476fc11836a3101fd13a01cc559-, p@chr11:67056544..67056589
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_48983476fc11836a3101fd13a01cc559p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_48983476fc11836a3101fd13a01cc559p1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_48983476fc11836a3101fd13a01cc559-, p@chr11:67056544..67056589
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_f01f6571304350b36602c5d2c3b45d53p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_f01f6571304350b36602c5d2c3b45d53p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_f01f6571304350b36602c5d2c3b45d53p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_f01f6571304350b36602c5d2c3b45d53p@chrY:2858251..2858257, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_fe3256af1a21860c78701a2595623031p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_fe3256af1a21860c78701a2595623031p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_6a67b3499dfa52832f27400cc8d39882p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_6a67b3499dfa52832f27400cc8d39882p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_0f4dcd73485a236ad5f7b900a74fdda9p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_0f4dcd73485a236ad5f7b900a74fdda9p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_80627cd4df62c22747caa9baef17cad0p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_80627cd4df62c22747caa9baef17cad0p1@Siglec15
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_27adba2abcb0a05067e0b2abaf85189dp6@Atp2a1
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_27adba2abcb0a05067e0b2abaf85189dp6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_7084e312df39daa5778076bb75c67636p7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_7084e312df39daa5778076bb75c67636p7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_1e53e63ba92d6b80bcce1769747db36ap@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_1e53e63ba92d6b80bcce1769747db36ap@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_1e53e63ba92d6b80bcce1769747db36ap@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_1e53e63ba92d6b80bcce1769747db36ap@chr7:133592162..133592188, -
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_076a8ad57c852194fef5c8505be9c9d7p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_076a8ad57c852194fef5c8505be9c9d7p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_8d1ccd1034198e7fe38482ba8d121eadp1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_8d1ccd1034198e7fe38482ba8d121eadp1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_e12b50c5f66b443f4dc69834e7d0ac71p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_e12b50c5f66b443f4dc69834e7d0ac71p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_e12b50c5f66b443f4dc69834e7d0ac71p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_e12b50c5f66b443f4dc69834e7d0ac71p2@Tm4sf19
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_e10f5851b6c8bff83fb9c787f0f02fcdp5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_e10f5851b6c8bff83fb9c787f0f02fcdp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_e10f5851b6c8bff83fb9c787f0f02fcdp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_e10f5851b6c8bff83fb9c787f0f02fcdp@chr15:97806574..97806585, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_14f1a5274b0d6a7c740e644bba2e22dap2@Siglec15
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_14f1a5274b0d6a7c740e644bba2e22dap@chr2:180890942..180890956, -

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