track RECLU_clusters
superTrack on none
group recluclusters
shortLabel FANTOM5 CAGE clusters by RECLU
longLabel FANTOM5 CAGE clusters identified by RECLU
visibility pack


track reproducible_clusters
compositeTrack on
shortLabel FANTOM5 CAGE reproducible clusters by RECLU
longLabel FANTOM5 CAGE reproducible clusters identified by RECLU
type bigBed 6
itemRgb on
boxedCfg on
thickDrawItem on
exonArrows on
visibility pack
subGroup1 category category top_peaks=top_peaks bottom_peaks=bottom_peaks
superTrack RECLU_clusters full
showSubtrackColorOnUi on

track cluster_top_peaks
compositeTrack off
shortLabel top peaks by RECLU
longLabel FANTOM5 CAGE top peaks by RECLU
type bigBed 6
visibility pack
dimensions dimA=library
filterComposite dimA
maxHeightPixels 100:8:8
superTrack reproducible_clusters
showSubtrackColorOnUi on
subGroup1 library library sample157=sample157 sample158=sample158

	track hela_top
	shortLabel sample157
	longLabel top peaks for HeLa cell
	bigDataUrl http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/reclu/clusters/toppeaks/cluster_HeLa_toppeaks.bed.bb
	type bigBed 6
	color 0,0,128
	maxHeightPixels 100:8:8
	parent cluster_top_peaks
	subGroups library=sample157

	track thp1_top
	shortLabel sample158
	longLabel top peaks for THP-1 cell
	bigDataUrl http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/reclu/clusters/toppeaks/cluster_THP1_toppeaks.bed.bb
	type bigBed 6
	color 0,0,128
	maxHeightPixels 100:8:8
	parent cluster_top_peaks
	subGroups library=sample158


track cluster_bottom_peaks
compositeTrack off
shortLabel bottom peaks by RECLU
longLabel FANTOM5 CAGE bottom peaks by RECLU
type bigBed 6
visibility pack
maxHeightPixels 100:8:8
superTrack reproducible_clusters
showSubtrackColorOnUi on
subGroup1 library library sample157=sample157 sample158=sample158

	track hela_bottom
	shortLabel sample157
	longLabel bottom peaks for HeLa cell
	bigDataUrl http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/reclu/clusters/bottompeaks/cluster_HeLa_bottompeaks.bed.bb
	type bigBed 6
	color 0,0,128
	maxHeightPixels 100:8:8
	parent cluster_bottom_peaks
	subGroups library=sample157

	track thp1_bottom
	shortLabel sample158
	longLabel bottom peaks for THP-1 cell
	bigDataUrl http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/reclu/clusters/bottompeaks/cluster_THP1_bottompeaks.bed.bb
	type bigBed 6
	color 0,0,128
	maxHeightPixels 100:8:8
	parent cluster_bottom_peaks
	subGroups library=sample158

track comparison_clusters
compositeTrack on
shortLabel differential expressed clusters by RECLU
longLabel FANTOM5 CAGE differential expressed clusters identified by RECLU
type bigBed 9
itemRgb on
boxedCfg on
thickDrawItem on
exonArrows on
visibility hide
subGroup1 category category top_peaks=top_peaks bottom_peaks=bottom_peaks
superTrack RECLU_clusters hide
showSubtrackColorOnUi on

track comparison_top_peaks
compositeTrack on
shortLabel differential expressed top peaks by RECLU
longLabel FANTOM5 CAGE differential expressed top peaks by RECLU
type bigBed 9
visibility hide
dimensions dimA=comparison1 dimB=comparison2 dimC=library
filterComposite dimA dimB dimC
maxHeightPixels 100:8:8
superTrack comparison_clusters
showSubtrackColorOnUi on
subGroup1 comparison1 comparison1 sample157=sample157 sample158=sample158
subGroup2 comparison2 comparison2 sample157=sample157 sample158=sample158
subGroup3 library library sample157_158=sample157_158

	track HeLa_vs_THP1_top
	shortLabel sample157_158
	longLabel top peaks comparison between HeLa and THP-1
	bigDataUrl http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/reclu/comparison/toppeaks/HeLa_vs_THP1/HeLa_vs_THP1_toppeaks.bb
	type bigBed 9
	itemRgb on
	maxHeightPixels 100:8:8
	parent comparison_top_peaks
	subGroups comparison1=sample157 comparison2=sample158 library=sample157_158


track comparison_bottom_peaks
compositeTrack on
shortLabel differential expressed bottom peaks by RECLU
longLabel FANTOM5 CAGE differential expressed bottom peaks by RECLU
type bigBed 9
visibility hide
dimensions dimA=comparison1 dimB=comparison2 dimC=library
filterComposite dimA dimB dimC
maxHeightPixels 100:8:8
superTrack comparison_clusters
showSubtrackColorOnUi on
subGroup1 comparison1 comparison1 sample157=sample157 sample158=sample158
subGroup2 comparison2 comparison2 sample157=sample157 sample158=sample158
subGroup3 library library sample157_158=sample157_158

	track HeLa_vs_THP1_bottom
	shortLabel sample157_158
	longLabel bottom peaks comparison between HeLa and THP-1
	bigDataUrl http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/reclu/comparison/bottompeaks/HeLa_vs_THP1/HeLa_vs_THP1_bottompeaks.bb
	type bigBed 9
	itemRgb on
	maxHeightPixels 100:8:8
	parent comparison_bottom_peaks
	subGroups comparison1=sample157 comparison2=sample158 library=sample157_158