View source for FF:3640-171I1

{{f5samples
|DRA_sample_Accession=CAGE@SAMD00022414
|accession_numbers=CAGE;DRX024139;DRR026544;DRZ005796;DRZ006576;DRZ010411;DRZ011069
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000101,FF:0000103,FF:0000001,FF:0000361,FF:0200001
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|donor= biol_rep2
|ffid_belonging_in_development=CL:0000049,CL:0000134
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cellprecursor=
|fonse_cellprecursor_closure=
|fonse_developsfrom=
|fonse_developsfrom_closure=
|fonse_disease=
|fonse_disease_closure=
|fonse_isa=
|fonse_isa_closure=
|fonse_location=
|fonse_location_closure=
|fonse_organ=
|fonse_organ_closure=
|fonse_organismsubdivision=
|fonse_organismsubdivision_closure=
|fonse_sampletype=
|fonse_sampletype_closure=
|fonse_stage=
|fonse_stage_closure=
|fonse_system=
|fonse_system_closure=
|fonse_taxon=
|fonse_taxon_closure=
|fonse_treatment=
|fonse_treatment_closure=
|has_quality=
|id=FF:3640-171I1
|is_a=FF:0000103;;FF:0000361;;FF:0200001
|is_obsolete=
|library_id=CNhs11540
|library_id_phase_based=2:CNhs11540
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;3640
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;3640
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/macrophage%252c%2520TB%2520infection%252c%2520stimulated%2520BMDM%252bIFNg%2528caMph%2529%252c%2520without%2520Mtb%252c%2520004hr%252c%2520biol_rep2.CNhs11540.3640-171I1.mm10.nobarcode.bam
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/macrophage%252c%2520TB%2520infection%252c%2520stimulated%2520BMDM%252bIFNg%2528caMph%2529%252c%2520without%2520Mtb%252c%2520004hr%252c%2520biol_rep2.CNhs11540.3640-171I1.mm10.nobarcode.ctss.bed.gz
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/macrophage%252c%2520TB%2520infection%252c%2520stimulated%2520BMDM%252bIFNg%2528caMph%2529%252c%2520without%2520Mtb%252c%2520004hr%252c%2520biol_rep2.CNhs11540.3640-171I1.mm9.nobarcode.bam
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/macrophage%252c%2520TB%2520infection%252c%2520stimulated%2520BMDM%252bIFNg%2528caMph%2529%252c%2520without%2520Mtb%252c%2520004hr%252c%2520biol_rep2.CNhs11540.3640-171I1.mm9.ctss.bed.gz
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/macrophage%252c%2520TB%2520infection%252c%2520stimulated%2520BMDM%252bIFNg%2528caMph%2529%252c%2520without%2520Mtb%252c%2520004hr%252c%2520biol_rep2.CNhs11540.3640-171I1.mm9.nobarcode.rdna.fa.gz
|name=macrophage, TB infection, stimulated BMDM+IFNg(caMph)
|namespace=
|part_of=
|profile_cagescan=
|profile_hcage=CNhs11540,LSID787,release014,COMPLETED
|profile_rnaseq=
|profile_srnaseq=
|rna_box=171
|rna_catalog_number=
|rna_concentration=0.88586
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=2.13
|rna_od260/280=2.13
|rna_position=I1
|rna_rin=10
|rna_sample_type=total RNA
|rna_tube_id=171I1
|rna_weight_ug=26.5758
|sample_age=
|sample_category=time courses
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=macrophage
|sample_collaboration=Frank Brombacher (University of Cape Town, South Africa)
|sample_company=
|sample_description=
|sample_dev_stage=UNDEFINED_DEV_STAGE
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=3640
|sample_note=
|sample_sex=male
|sample_species=Mouse (Mus musculus)
|sample_strain=BALB/c
|sample_tissue=bone marrow
|time= 004hr
|timecourse=BMM_TB_activation_IFNg
|top_motifs=
|xref=
}}