View source for Template:FFCP others

{{Loading|loadingimage=sprites.gif}}<table>
<tr><th scope="row" align="right">CAGE_peaks_ID:</th><td>{{{cage_peaks_id}}}</td></tr>
<tr><th scope="row" align="right">Chr:</th><td>{{{chromosome}}}</td></tr>
<tr><th scope="row" align="right">Start:</th><td>{{{start}}}</td></tr>
<tr><th scope="row" align="right">End:</th><td>{{{end}}}</td></tr>
<tr><th scope="row" align="right">Score:</th><td>{{{score}}}</td></tr>
<tr><th scope="row" align="right">Strand:</th><td>{{{strand}}}</td></tr>
<tr><th scope="row" align="right">Ensembl_transcript_id:</th><td>{{#replace:{{{ensembl_transcript_id}}}|,|<br>}}</td></tr>
{{#if:{{{ensembl_gene_name|}}}|<tr><th scope="row" align="right">Ensembl_gene_name:</th><td>{{{ensembl_gene_name}}}</td></tr>|}}
<tr><th scope="row" align="right">Augustus_gene_name:</th><td>{{#replace:{{{augustus_gene_name}}}|,|<br>}}</td></tr>
<tr><th scope="row" align="right">RefSeq_transcript_id:</th><td>{{{refseq_transcript_id}}}</td></tr>
<tr><th scope="row" align="right">Genscan_gene_name:</th><td>{{{genscan_gene_name}}}</td></tr>
<tr><th scope="row" align="right">EST_gene_name:</th><td>{{{est_gene_name}}}</td></tr>
{{#ifeq:{{{species}}}|Gallus gallus|<tr><th scope="row" align="right">ALDB_lincRNA:</th><td>{{{aldb_lincRNA}}}</td></tr>|}}
{{#ifeq:{{{species}}}|Gallus gallus|<tr><th scope="row" align="right">NONCODE:</th><td>{{{noncode}}}</td></tr>|}}
</table>
<br>
{{Fontsize|3|CAGE Expression}}
----
<html><script type="text/javascript" language="javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
	<style type="text/css" title="currentStyle">
		@import "/5/sstar/rb_js/html5button/datatables.css";
		@import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
	</style>

</html>

<html>
<style type="text/css">  
.rotate90 {
  -webkit-transform: rotate(-90deg);
  -moz-transform: rotate(-90deg);
-webkit-transform-origin: 6px 18px;
-moz-transform-origin: 6px 18px;
width:1px;
}
.highlight { background-color: yellow }
</style>
<script type="text/javascript">
$(document).ready(function() {
    var oTable =  $('#gene_exptable').DataTable({
        dom: 'frt',
		scrollY: "300px",
		paging: false,
		scrollCollapse: true,
		pageLength: -1,
		order: [[1,'desc']],
		columnDefs: [{ orderSequence: [ "desc", "asc" ], targets: [ 1 ] }, { type: "html-num", targets: [ 0 ] } ]
});
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");


var data = [];
var slist = [];
var plotdata = [];


// chart checkbox
for (var i2=1; i2<$('#gene_exptable thead th').length; i2++){
key2 = i2-1;
        $("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 +
                               '" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">'
                                + $('#gene_exptable thead th:nth-child('+(i2+1)+')').text() + '</label><br/>');
}

function collectdata(){
data = [];
		for (i2=1, len2=$('#gene_exptable thead th').length; i2<len2; i2++){
			var plots = [];
			for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) {
  		  		plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]);
		 	}
		 	data.push({"label": $('#gene_exptable thead th:nth-child('+(i2+1)+')').text(), "data": plots});
		}
slist = [];
			for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) {
  		  		slist.push($("#gene_exptable tr")[i1].cells[0].innerHTML);
		 	}
//test
//slist[0] = "test";
}


function drawchart(){

plotdata = [];

$("#gene_exptable_chart_chkbox").find("input:checked").each(function () {
		var key = $(this).attr("name");
		plotdata.push(data[$(this).attr("name")]);
});

var plot1 = $.plot($("#gene_exptable_chart"), plotdata, {
                yaxis : { axisLabel : 'TPM' },
		lines : { show : false },
		points : { show : true },
                grid: { hoverable: true, clickable: true },
		xaxis : { tickDecimals : 0, show: false	},
                legend: { show: false }
});

//test
var data_series = plot1.getData();

$("#gene_exptable_chart_chkbox label").css("background-color", "white");
$.each(data_series , function(){
$("#gene_exptable_chart_chkbox label:contains(" + this.label + ")").css("background-color", this.color);
});



}

collectdata();
drawchart();

// re-draw chart event
$(window).resize(function() { drawchart(); });
$("th").click(function() {collectdata(); drawchart(); } );
$("#gene_exptable_paginate").click(function() {collectdata(); drawchart(); } );
$('#gene_exptable').bind('filter', function() { 
setTimeout(function(){
collectdata(); drawchart();}, 1000);
 } );
$('#gene_exptable_length').change(function() {collectdata(); drawchart(); } );
$("#gene_exptable_chart_chkbox").find("input").click(function() { drawchart(); });

// tooltip function start
    function showTooltip(x, y, contents) {
        $('<div id="tooltip">' + contents + '</div>').css( {
            position: 'absolute',
            display: 'none',
            top: y + 5,
            left: x + 5,
            border: '1px solid #aaa',
            padding: '2px',
            'background-color': '#fff',
            opacity: 0.80
        }).appendTo("body").fadeIn(200);
    }

    var previousPoint = null;
    $("#gene_exptable_chart").bind("plothover", function (event, pos, item) {
        $("#x").text(pos.x.toFixed(2));
        $("#y").text(pos.y.toFixed(2));
            if (item) {
                if (previousPoint != item.dataIndex) {
                    previousPoint = item.dataIndex;
                    
                    $("#tooltip").remove();
                    x = item.datapoint[0].toFixed(0),
                    y = item.datapoint[1].toFixed(2);
                  
                    showTooltip(item.pageX, item.pageY,
                               "Sample: "+slist[item.dataIndex]+"<br>TSS: "+ item.series.label +"  TPM: "+y);
                }
            }
            else {
                $("#tooltip").remove();
                previousPoint = null;            
            }
    });
// tooltip function end

// clicking point function
    $("#gene_exptable_chart").bind("plotclick", function (event, pos, item) {
if (item){
var vdata = Math.round($('#gene_exptable').height())/item.series.data.length*item.dataIndex;
$('#gene_exptable_wrapper .dataTables_scrollBody').animate({ scrollTop: vdata-150 }, 'slow');
$("#gene_exptable_wrapper .dataTables_scrollBody tbody td").removeClass('highlight');
$('#gene_exptable_wrapper .dataTables_scrollBody tbody tr:eq(' + item.dataIndex+ ') td').addClass('highlight');
}
    });
// clicking point function end





} );
</script>
</html>

<includeonly>{{#gene_exptable:{{#explode:{{PAGENAME}}|:|0}}
|value,{{{expression}}}<nowiki>|</nowiki>short_description=value
}}</includeonly>
<br>
<br>
<div id="gene_exptable_chart" style="float:left;width:600px;height:300px;"></div>
<br>
<div id="gene_exptable_chart_chkbox" style="float:left;"></div>
<div style="clear:both;"></div>


*Click each plot point to find sample in table

{{#arraymap:{{{short_description}}}|,|$|{{#set:short_description=$}}}}
{{#arraymap:{{{description}}}|,|$|{{#set:description=$}}}}
{{#arraymap:{{{association_with_transcript}}}|,|$|{{#set:association_with_transcript=$}}}}
{{#arraymap:{{{EntrezGene}}}|,|$|{{#set:EntrezGene=$}}}}
{{#arraymap:{{{HGNC}}}|,|$|{{#set:HGNC=$}}}}
{{#arraymap:{{{UniProt}}}|,|$|{{#set:UniProt=$}}}}
{{#set:phase1_expression={{{phase1_expression}}}}}
{{#set:id={{{id}}}}}
{{#set:chromosome={{#replace:{{#explode:{{PAGENAME}}|:|2}}|chr|}}}}
{{#set:genomic_location_start={{#explode:{{#explode:{{PAGENAME}}|:|3}}|..|0}}}}
{{#set:genomic_location_end={{#explode:{{#explode:{{PAGENAME}}|..|-1}}|,|0}}}}
{{#set:strand={{#explode:{{PAGENAME}}|,|-1}}}}

{{#set:cage_peaks_id={{{cage_peaks_id}}}}}
{{#set:chromosome={{{chromosome}}}}}
{{#set:start={{{start}}}}}
{{#set:end={{{end}}}}}
{{#set:score={{{score}}}}}
{{#set:strand={{{strand}}}}}
{{#set:ensembl_transcript_id={{{ensembl_transcript_id|}}}}}
{{#set:ensembl_gene_id={{{ensembl_gene_id}}}}}
{{#set:ensembl_gene_name={{{ensembl_gene_name}}}}}
{{#set:augustus_gene_name={{{augustus_gene_name}}}}}
{{#set:refseq_transcript_id={{{refseq_transcript_id}}}}}
{{#set:genscan_gene_name={{{genscan_gene_name}}}}}
{{#set:est_gene_name={{{est_gene_name}}}}}
{{#set:species={{{species}}}}}

[[Category:FFCP]]