Personal tools

Cytoscape test2: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 81: Line 81:
var edgeArrowMapper = {
var edgeArrowMapper = {
attrName: "type",
attrName: "type",
entries: [ { attrValue: "has_motif", value: "NONE" }, { attrValue: "promotes", value: "delta" } ]
entries: [ { attrValue: "has_motif", value: "arrow" }, { attrValue: "promotes", value: "delta" } ]
};
};
Line 112: Line 112:
},
},
edges: {
edges: {
width: { passthroughMapper: { attrName: "zscore" } },
width: { defaultValue: 5, passthroughMapper: { attrName: "zscore" } },
label: { passthroughMapper: { attrName: "promoter" } },
label: { passthroughMapper: { attrName: "promoter" } },
//tooltipText: "<b>Promoter: ${promoter}</b><br />Z-Score: ${zscore}",
//tooltipText: "<b>Promoter: ${promoter}</b><br />Z-Score: ${zscore}",

Latest revision as of 12:57, 8 May 2012

FF:10717-109I6, TF to Motif to TF network

Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.

Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).

Cytoscape Web will replace the contents of this div with your graph.