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{{f5samples
        <h1 id="firstHeading" class="firstHeading">FF:10717-109I6, TF to Motif to TF network</h1>
|ancestors_in_anatomy_facet=
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548
<p>Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.</p>
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4
<p>Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).
|comment=
</p>
|created_by=
 
|creation_date=
<!-- F5 Cytoscape App HTML -->
|def=
<div id="f5_cytoscapeweb">
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.69!491.06!EHF;;chr17:7493405..7493419,-!p1@SOX15!2.43!267.58!SOX15;;chr6:1312325..1312340,+!p1@FOXQ1!2.42!421.22!FOXQ1;;chr1:201979703..201979721,+!p2@ELF3!2.15!140.16!ELF3;;chr1:209979467..209979494,-!p1@IRF6!2.01!113.70!IRF6;;chr1:201979743..201979762,+!p1@ELF3!1.99!97.77!ELF3;;chr11:34642656..34642667,+!p2@EHF!1.92!81.35!EHF;;chr6:10415484..10415508,-!p3@TFAP2A!1.90!78.17!TFAP2A;;chr10:48355030..48355090,+!p1@ZNF488!1.81!81.35!ZNF488;;chr3:189507432..189507459,+!p1@TP63!1.80!61.51!TP63;;chr8:10588010..10588030,-!p1@SOX7!1.70!49.01!SOX7;;chr11:65554528..65554546,+!p1@OVOL1!1.68!46.56!OVOL1;;chr1:6479968..6479986,-!p1@HES2!1.68!46.56!HES2;;chr8:102504651..102504683,+!p1@GRHL2!1.62!41.17!GRHL2;;chr1:209979411..209979433,-!p2@IRF6!1.54!33.57!IRF6;;chr12:54785074..54785122,-!p2@ZNF385A!1.52!49.25!ZNF385A;;chr10:8096772..8096787,+!p2@GATA3!1.52!37.98!GATA3;;chr19:45971246..45971265,+!p1@FOSB!1.51!552.57!FOSB;;chr11:31832658..31832681,-!p1@PAX6!1.51!31.12!PAX6;;chr5:2751762..2751784,-!p1@IRX2!1.51!31.12!IRX2;;chr17:7492684..7492778,-!p2@SOX15!1.44!55.13!SOX15;;chr1:935398..935465,-!p2@HES4!1.43!52.68!HES4;;chr14:38064429..38064486,-!p1@FOXA1!1.41!24.75!FOXA1;;chr3:111314186..111314204,-!p1@ZBED2!1.39!23.28!ZBED2;;chr13:73633131..73633149,+!p1@KLF5!1.38!238.91!KLF5;;chr8:102504979..102505010,+!p2@GRHL2!1.35!21.32!GRHL2;;chr3:193853927..193853944,+!p1@HES1!1.33!644.21!HES1;;chr2:176969228..176969260,+!p1@HOXD11!1.33!20.58!HOXD11;;chr11:65554563..65554576,+!p2@OVOL1!1.33!20.58!OVOL1;;chr6:10412600..10412637,-!p1@TFAP2A!1.32!32.59!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.30!22.30!GATA3;;chr3:12330560..12330579,+!p1@PPARG!1.30!21.56!PPARG;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.30!19.11!SOHLH2;;chr6:10415276..10415341,-!p2@TFAP2A!1.29!22.30!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!1.25!16.91!TBX20;;chr5:134369905..134369972,-!p1@PITX1!1.24!25.24!PITX1;;chr6:10419768..10419819,-!p6@TFAP2A!1.24!16.42!TFAP2A;;chr11:31832610..31832639,-!p5@PAX6!1.24!16.42!PAX6;;chr11:120107344..120107351,+!p1@POU2F3!1.21!18.62!POU2F3;;chr19:23869970..23869991,-!p1@ZNF675!1.19!54.89!ZNF675;;chr15:83953397..83953425,-!p1@BNC1!1.19!16.66!BNC1;;chr12:19556998..19557013,+!p6@AEBP2!1.19!14.46!AEBP2;;chr12:54785054..54785072,-!p4@ZNF385A!1.17!15.44!ZNF385A;;chr2:176969179..176969226,+!p2@HOXD11!1.15!12.99!HOXD11;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.17!TFAP2C;;chr2:45236540..45236577,-!p1@SIX2!1.14!12.74!SIX2;;chr6:1389789..1389821,+!p1@FOXF2!1.13!17.15!FOXF2;;chr20:30193083..30193098,+!p1@ID1!1.12!971.58!ID1;;chr19:58694421..58694485,+!p1@ZNF274!1.12!64.20!ZNF274;;chr22:19748231..19748317,+!p1@TBX1!1.11!12.01!TBX1;;chr7:27192185..27192209,-!p1@HOXA3!1.11!11.76!HOXA3;;chr5:137804484..137804498,+!p2@EGR1!1.10!46.56!EGR1;;chr10:8096631..8096660,+!p1@GATA3!1.09!13.72!GATA3;;chr11:19262421..19262455,-!p3@E2F8!1.09!11.27!E2F8;;chr6:10413188..10413249,-!p7@TFAP2A!1.09!11.27!TFAP2A;;chr20:50721803..50721857,-!p2@ZFP64!1.08!17.40!ZFP64;;chr11:65667846..65667868,-!p1@FOSL1!1.07!286.21!FOSL1;;chr17:46682321..46682362,-!p1@HOXB6!1.07!10.78!HOXB6;;chr12:27485762..27485776,+!p3@ARNTL2!1.06!28.18!ARNTL2;;chr20:31350184..31350200,+!p1@DNMT3B!1.06!22.05!DNMT3B;;chr6:29648890..29648944,-!p1@ZFP57!1.06!10.54!ZFP57;;chr7:27224842..27224872,-!p1@HOXA11!1.06!10.54!HOXA11;;chr2:214015343..214015366,-!p3@IKZF2!1.05!10.29!IKZF2;;chr15:96869511..96869525,+!p16@NR2F2!1.04!11.03!NR2F2;;chr8:102504690..102504704,+!p3@GRHL2!1.04!10.05!GRHL2;;chr11:65667884..65667895,-!p2@FOSL1!1.03!37.98!FOSL1;;chr12:19556960..19556982,+!p10@AEBP2!1.02!9.56!AEBP2;;chr13:28543285..28543314,-!p2@CDX2!1.02!9.56!CDX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.02!9.56!ZBED1;;chr11:19263160..19263176,-!p1@E2F8!0.99!10.29!E2F8;;chr19:23433144..23433204,-!p1@ZNF724P!0.98!39.70!ZNF724P;;chr20:42543441..42543497,+!p1@TOX2!0.98!39.45!TOX2;;chr17:46687959..46688007,-!p2@HOXB7!0.97!11.76!HOXB7;;chr2:223163706..223163730,-!p1@PAX3!0.96!8.09!PAX3;;chr19:24097675..24097699,+!p1@ZNF726!0.95!27.20!ZNF726;;chr5:50679228..50679288,+!p1@ISL1!0.95!7.84!ISL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.94!55.38!ARNTL2;;chr2:61108808..61108821,+!p3@REL!0.93!9.56!REL;;chr12:54348655..54348693,+!p1@HOXC12!0.93!7.60!HOXC12;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.20!BHLHE41;;chr6:28048343..28048354,+!p1@ZNF165!0.92!7.35!ZNF165;;chr7:27196267..27196311,-!p1@HOXA7!0.91!7.11!HOXA7;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.87!NCOA7;;chr7:27135591..27135658,-!p1@HOXA1!0.90!13.72!HOXA1;;chr6:10419824..10419840,-!p9@TFAP2A!0.90!6.86!TFAP2A;;chr6:1312155..1312187,+!p2@FOXQ1!0.90!6.86!FOXQ1;;chr14:29235961..29236008,+!p1@FOXG1!0.90!6.86!FOXG1;;chr2:60780753..60780800,-!p1@BCL11A!0.89!34.55!BCL11A;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.62!ZFPM2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.88!61.26!PPP1R13L;;chr19:47523058..47523114,+!p1@NPAS1!0.88!6.62!NPAS1;;chr1:3569072..3569093,+!p1@TP73!0.88!6.62!TP73;;chr19:2867325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4:4861385..4861398,+!p1@MSX1!0.28!4.41!MSX1;;chr8:37963407..37963454,+!p2@ASH2L!0.28!4.41!ASH2L;;chr5:43121607..43121649,+!p4@ZNF131!0.28!4.17!ZNF131;;chr16:4323015..4323067,-!p2@TFAP4!0.28!3.92!TFAP4;;chr9:114287433..114287513,+!p1@ZNF483!0.28!3.68!ZNF483;;chr19:57901326..57901385,+!p2@ZNF548!0.28!3.43!ZNF548;;chr5:76383070..76383117,-!p3@ZBED3!0.28!2.70!ZBED3;;chr16:3285119..3285133,-!p2@ZNF200!0.28!2.70!ZNF200;;chr3:114343826..114343869,-!p4@ZBTB20!0.28!2.70!ZBTB20;;chr1:235383681..235383700,-!p2@ARID4B!0.28!2.21!ARID4B;;chr1:35656352..35656383,-!p7@SFPQ!0.28!2.21!SFPQ;;chr12:3068501..3068515,+!p4@TEAD4!0.28!2.21!TEAD4;;chr1:43148855..43148908,+!p4@YBX1!0.28!1.96!YBX1;;chr21:34144157..34144175,-!p3@GCFC1!0.28!1.96!GCFC1;;chr16:88752889..88752921,-!p1@SNAI3!0.28!1.23!SNAI3;;chr17:46622229..46622257,-!p6@HOXB2!0.28!1.23!HOXB2;;chr1:35658736..35658754,-!p1@SFPQ!0.27!607.94!SFPQ;;chr12:124457746..124457828,+!p1@ZNF664!0.27!63.71!ZNF664;;chr6:32157947..32157992,-!p1@PBX2!0.27!27.93!PBX2;;chr20:33413416..33413466,-!p1@NCOA6!0.27!19.60!NCOA6;;chr4:47916588..47916607,-!p1@NFXL1!0.27!13.48!NFXL1;;chr3:113415441..113415500,-!p1@KIAA2018!0.27!8.58!KIAA2018;;chr10:43134001..43134026,-!p1@ZNF33B!0.27!6.86!ZNF33B;;chr20:47894936..47895010,-!p2@ZNFX1!0.27!4.66!ZNFX1;;chr19:12721790..12721810,+!p2@ZNF791!0.27!3.92!ZNF791;;chr17:61920246..61920272,-!p4@SMARCD2!0.27!2.94!SMARCD2;;chr3:125094150..125094176,-!p2@ZNF148!0.27!2.94!ZNF148;;chr9:102584128..102584144,+!p3@NR4A3!0.27!2.45!NR4A3;;chr9:109625229..109625282,+!p2@ZNF462!0.27!1.96!ZNF462;;chr6:43139248..43139261,+!p4@SRF!0.27!1.72!SRF;;chr8:145980968..145980996,-!p2@ZNF251!0.27!1.72!ZNF251;;chr12:133613902..133613924,+!p4@ZNF84!0.27!1.47!ZNF84;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.27!1.47!ZNF700;;chr7:17369649..17369664,+!p4@AHR!0.27!1.23!AHR;;chr2:60778035..60778060,-!p4@BCL11A!0.27!1.23!BCL11A;;chr6:35465058..35465077,-!p2@TEAD3!0.27!0.98!TEAD3;;chr17:41623667..41623682,-!p8@ETV4!0.27!0.98!ETV4;;chr10:135122380..135122458,+!p1@ZNF511!0.26!50.23!ZNF511;;chr21:36260980..36261011,-!p1@RUNX1!0.26!47.05!RUNX1;;chr19:56632592..56632670,-!p1@ZNF787!0.26!36.51!ZNF787;;chr8:145159357..145159373,+!p3@MAF1!0.26!20.58!MAF1;;chr3:141087339..141087387,+!p2@ZBTB38!0.26!16.42!ZBTB38;;chr19:53935221..53935258,+!p1@ZNF761!0.26!16.17!ZNF761;;chr7:77428149..77428220,+!p1@PHTF2!0.26!15.93!PHTF2;;chr10:111985713..111985774,+!p2@MXI1!0.26!15.19!MXI1;;chr12:115121962..115121987,-!p1@TBX3!0.26!13.23!TBX3;;chr19:57862622..57862686,+!p1@ZNF304!0.26!7.60!ZNF304;;chr6:27440837..27440912,-!p1@ZNF184!0.26!6.86!ZNF184;;chr17:56065729..56065781,-!p2@VEZF1!0.26!6.37!VEZF1;;chr19:11959532..11959593,+!p1@ZNF439!0.26!5.64!ZNF439;;chr19:44439420..44439447,-!p1@ZNF45!0.26!5.39!ZNF45;;chr12:3069037..3069119,+!p2@TEAD4!0.26!4.90!TEAD4;;chr1:164528384..164528409,+!p3@PBX1!0.26!4.41!PBX1;;chr1:59249645..59249656,-!p4@JUN!0.26!3.43!JUN;;chr12:133707172..133707202,+!p2@ZNF10!0.26!2.94!ZNF10;;chr17:46622070..46622109,-!p1@HOXB2!0.26!2.94!HOXB2;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.26!1.96!MEIS3P1;;chr4:38665753..38665757,+!p7@KLF3!0.26!1.96!KLF3;;chr2:70167296..70167306,+!p3@MXD1!0.26!1.72!MXD1;;chr19:57078972..57079027,+!p2@ZNF470!0.26!1.72!ZNF470;;chr3:183415653..183415664,+!p2@YEATS2!0.26!1.47!YEATS2;;chr3:126194866..126194887,-!p3@ZXDC!0.26!1.23!ZXDC;;chr1:151032739..151032748,+!p6@MLLT11!0.26!1.23!MLLT11;;chr12:133563026..133563037,+!p3@ZNF26!0.26!1.23!ZNF26;;chr8:116681275..116681290,-!p11@TRPS1!0.26!1.23!TRPS1;;chr15:37392534..37392562,-!p10@MEIS2!0.26!0.98!MEIS2;;chr8:145515263..145515299,+!p1@HSF1!0.25!115.90!HSF1;;chr7:27779729..27779819,+!p1@TAX1BP1!0.25!101.20!TAX1BP1;;chr11:12695944..12695989,+!p1@TEAD1!0.25!57.09!TEAD1;;chr11:118307179..118307223,+!p1@MLL!0.25!48.52!MLL;;chr1:14075903..14075940,+!p1@PRDM2!0.25!34.06!PRDM2;;chr4:103422499..103422632,+!p1@NFKB1!0.25!33.33!NFKB1;;chr17:2304333..2304364,-!p1@MNT!0.25!21.56!MNT;;chr11:64073022..64073056,+!p1@ESRRA!0.25!18.62!ESRRA;;chr8:144623595..144623646,-!p1@ZC3H3!0.25!15.19!ZC3H3;;chr1:53019059..53019176,-!p2@ZCCHC11!0.25!13.72!ZCCHC11;;chr1:247267618..247267674,-!p1@ZNF669!0.25!12.25!ZNF669;;chr1:227751231..227751273,+!p1@ZNF678!0.25!9.56!ZNF678;;chr19:53898380..53898422,+!p1@ZNF765!0.25!9.07!ZNF765;;chr10:51572408..51572454,+!p3@NCOA4!0.25!8.82!NCOA4;;chrX:129402866..129402880,-!p1@ZNF280C!0.25!8.58!ZNF280C;;chr13:41635512..41635539,-!p2@ELF1!0.25!8.33!ELF1;;chr2:28616358..28616380,+!p3@FOSL2!0.25!7.60!FOSL2;;chr19:44488330..44488379,+!p1@ZNF155!0.25!7.11!ZNF155;;chr8:146176199..146176272,-!p1@ZNF16!0.25!6.86!ZNF16;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.25!5.39!HNRPK;;chr19:58095501..58095535,+!p1@ZIK1!0.25!4.90!ZIK1;;chr15:37393449..37393528,-!p4@MEIS2!0.25!3.68!MEIS2;;chr18:3450293..3450304,+!p4@TGIF1!0.25!3.19!TGIF1;;chr11:47235980..47236028,+!p3@DDB2!0.25!2.94!DDB2;;chr1:23694697..23694756,-!p3@ZNF436!0.25!2.94!ZNF436;;chr8:60031619..60031676,-!p1@TOX!0.25!2.70!TOX;;chr8:23540441..23540466,-!p1@NKX3-1!0.25!2.45!NKX3-1;;chr11:85376097..85376108,-!p2@CREBZF!0.25!2.21!CREBZF;;chr19:3572908..3572917,+!p3@HMG20B!0.25!1.96!HMG20B;;chr20:49547554..49547563,-!p6@ADNP!0.25!1.72!ADNP;;chr20:52185447..52185462,-!p2@ZNF217!0.25!1.72!ZNF217;;chr2:169312600..169312606,+!p2@CERS6!0.25!1.72!CERS6;;chrX:76937858..76937877,-!p5@ATRX!0.25!1.47!ATRX;;chr13:46543346..46543367,-!p9@ZC3H13!0.25!1.23!ZC3H13;;chr17:2304082..2304103,-!p5@MNT!0.25!1.23!MNT;;chr17:40440225..40440268,+!p3@STAT5A!0.25!1.23!STAT5A;;chr19:35417939..35417963,+!p3@ZNF30!0.25!1.23!ZNF30;;chr19:50431973..50431998,+!p5@ATF5!0.25!1.23!ATF5;;chr15:76629097..76629120,+!p2@ISL2!0.25!0.98!ISL2;;chr17:17726892..17726903,-!p6@SREBF1!0.25!0.98!SREBF1;;chr19:15543484..15543561,-!p1@WIZ!0.24!35.78!WIZ;;chr19:58125580..58125639,+!p1@ZNF134!0.24!24.26!ZNF134;;chr2:70314579..70314590,+!p2@PCBP1!0.24!23.77!PCBP1;;chr7:6746529..6746591,-!p1@ZNF12!0.24!21.07!ZNF12;;chr21:30671235..30671253,+!p1@BACH1!0.24!19.60!BACH1;;chr12:125052112..125052172,-!p2@NCOR2!0.24!13.72!NCOR2;;chr20:49547691..49547724,-!p2@ADNP!0.24!9.07!ADNP;;chr12:80084303..80084332,-!p1@PAWR!0.24!8.58!PAWR;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.24!3.92!ZNF321P;;chr2:75937794..75937867,-!p2@GCFC2!0.24!2.70!GCFC2;;chr11:695215..695231,-!p2@DEAF1!0.24!2.21!DEAF1;;chr19:12551785..12551823,-!p1@ZNF443!0.24!1.72!ZNF443;;chr8:128752771..128752843,+!p9@MYC!0.24!1.47!MYC;;chr8:80679993..80680011,-!p1@HEY1!0.24!1.47!HEY1;;chrX:152599579..152599595,+!p2@ZNF275!0.24!1.47!ZNF275;;chr20:50179368..50179392,-!p2@NFATC2!0.24!1.23!NFATC2;;chr2:28616312..28616315,+!p8@FOSL2!0.24!0.98!FOSL2;;chrX:107019163..107019179,-!p7@TSC22D3!0.24!0.98!TSC22D3;;chr14:61116168..61116180,-!p2@SIX1!0.24!0.98!SIX1;;chr10:118897577..118897600,-!p5@VAX1!0.24!0.74!VAX1;;chr10:118897911..118897974,-!p1@VAX1!0.24!0.74!VAX1;;chr10:124907645..124907660,+!p1@HMX2!0.24!0.74!HMX2;;chr10:126138597..126138612,-!p1@NKX1-2!0.24!0.74!NKX1-2;;chr10:131762504..131762555,-!p1@EBF3!0.24!0.74!EBF3;;chr10:135122868..135122893,+!p3@ZNF511!0.24!0.74!ZNF511;;chr11:129245796..129245803,+!p3@BARX2!0.24!0.74!BARX2;;chr11:64073848..64073856,+!p6@ESRRA!0.24!0.74!ESRRA;;chr12:26277994..26278001,-!p6@BHLHE41!0.24!0.74!BHLHE41;;chr12:54332675..54332686,+!p4@HOXC13!0.24!0.74!HOXC13;;chr12:54379915..54379935,+!p8@HOXC10!0.24!0.74!HOXC10;;chr12:66358080..66358094,+!p15@HMGA2!0.24!0.74!HMGA2;;chr12:72056897..72056908,+!p12@THAP2!0.24!0.74!THAP2;;chr12:80084120..80084136,-!p15@PAWR!0.24!0.74!PAWR;;chr13:73636440..73636451,+!p9@KLF5!0.24!0.74!KLF5;;chr13:79177674..79177701,-!p1@POU4F1!0.24!0.74!POU4F1;;chr14:29236169..29236216,+!p6@FOXG1!0.24!0.74!FOXG1;;chr14:35872542..35872553,-!p10@NFKBIA!0.24!0.74!NFKBIA;;chr14:38064198..38064200,-!p11@FOXA1!0.24!0.74!FOXA1;;chr19:45908286..45908291,-!p3@PPP1R13L!0.24!0.74!PPP1R13L;;chr19:45974146..45974170,+!p7@FOSB!0.24!0.74!FOSB;;chr19:49140645..49140654,-!p6@DBP!0.24!0.74!DBP;;chr19:50529307..50529323,+!p3@ZNF473!0.24!0.74!ZNF473;;chr19:6110458..6110472,-!p3@RFX2!0.24!0.74!RFX2;;chr1:10856665..10856683,-!p4@CASZ1!0.24!0.74!CASZ1;;chr1:247094628..247094663,-!p5@AHCTF1!0.24!0.74!AHCTF1;;chr1:3568870..3568881,+!p5@TP73!0.24!0.74!TP73;;chr1:40105299..40105326,-!p1@HEYL!0.24!0.74!HEYL;;chr1:42384343..42384380,-!p4@HIVEP3!0.24!0.74!HIVEP3;;chr1:42801540..42801562,-!p4@FOXJ3!0.24!0.74!FOXJ3;;chr20:50721883..50721896,-!p11@ZFP64!0.24!0.74!ZFP64;;chr20:55205825..55205847,+!p2@TFAP2C!0.24!0.74!TFAP2C;;chr21:36260495..36260506,-!p23@RUNX1!0.24!0.74!RUNX1;;chr21:38071488..38071502,+!p4@SIM2!0.24!0.74!SIM2;;chr5:133450458..133450469,+!p4@TCF7!0.24!0.74!TCF7;;
<div id="cytoscapeweb"></div>
|fonse_cell_line=FF:0101120
<p /><b>LEGEND:</b> <span class="tf">TF <img src="/resource_browser/nwfiles/tf.png" /></span>, <span class="motif">MOTIF <img src="/resource_browser/nwfiles/motif.png" /></span>,  
|fonse_cell_line_closure=FF:0101120
<br /><span class="tf">MOTIF->TF <img src="/resource_browser/nwfiles/motif-tf.png" /></span>, <span class="motif">TF->MOTIF <img src="/resource_browser/nwfiles/tf-motif.png" /></span>
|fonse_cellprecursor=
 
|fonse_cellprecursor_closure=
</div>
|fonse_developsfrom=
|fonse_developsfrom_closure=
<div id="tabs">
|fonse_disease=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4
<ul>
|fonse_disease_closure=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4
<li><a href="#style_panel">Layout</a></li>
|fonse_isa=EFO:0002091,FF:0000210,FF:0102024
<li><a href="#filter_panel">Filter</a></li>
|fonse_isa_closure=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548,DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4,EFO:0000001,EFO:0000683,EFO:0002091,FF:0000001,FF:0000003,FF:0000101,FF:0000102,FF:0000210,FF:0100297,FF:0101120,FF:0102024,FF:10717-109I6,snap:Role,snap:SpecificallyDependentContinuant
<li><a href="#export_panel">Export</a></li>
|fonse_location=
<li><a href="#properties_panel">Data</a></li>
|fonse_location_closure=
|fonse_organ=
</ul>
|fonse_organ_closure=
<div id="style_panel">
|fonse_organismsubdivision=
<label class="style">Layout:</label>
|fonse_organismsubdivision_closure=
<select id="cyto_layout" class="ui-button ui-widget ui-state-default ui-corner-all ui-button-text-only">
|fonse_sampletype=FF:0000003
  <option value="Preset">Preset</option>
|fonse_sampletype_closure=FF:0000003
  <option value="ForceDirected">Force Directed</option>
|fonse_stage=
  <option value="Circle">Circle</option>
|fonse_stage_closure=
  <option value="Radial">Radial</option>
|fonse_system=
  <option value="Tree">Tree</option>
|fonse_system_closure=
</select>
|fonse_taxon=FF:0000210
<button id="cyto_recalc">Recalculate</button>
|fonse_taxon_closure=FF:0000210
<label class="style">Labels:</label>
|fonse_treatment=
<input type="checkbox" id="cyto_node_labels" checked> Nodes</td></tr>
|fonse_treatment_closure=
<br /><input type="checkbox" id="cyto_edge_labels"> Edges</td></tr>
|has_quality=
</div>
|id=FF:10717-109I6
<div id="filter_panel">
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102024
 
|name=acantholytic squamous carcinoma cell line:HCC1806
|namespace=FANTOM5
<label class="filter">Show edges:</label>
|part_of=
<input type="checkbox" id="cyto_edges_binds_to" checked>TF->MOTIF</input>
|profile_cagescan=,,,
<br /><input type="checkbox" id="cyto_edges_promotes" checked>Promoters</input>
|profile_hcage=CNhs11844,LSID829,release010,COMPLETED
<label class="filter">Z-Score filter:</label>
|profile_rnaseq=,,,
<table class="slider">
|profile_srnaseq=,,,
<tr><td></td><td id="data_bar"></td><td></td></tr>
|rna_box=109
<tr valign="bottom"><td id="cyto_zscore_min" >0.00</td><td ><div id="slider1" class="sliderbar"></div></td><td id="cyto_zscore_max">1</td></tr>
|rna_catalog_number=
<!-- tr><td></td><td valign="top" ><input type="text" id="cyto_zscore_filter_min" value="0" style="float: left; width: 35px;"/>  <input type="text" id="cyto_zscore_filter_max" value="100" style="float: right; width: 35px;"/></td><td></td></tr -->
|rna_concentration=1.31113
</table>
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
<label class="filter">Show nodes:</label>
|rna_lot_number=
<input type="checkbox" id="cyto_nodes_tf_src" checked>Source TF (Outdegree = 1)</input>
|rna_od260/230=1.79
<br /><input type="checkbox" id="cyto_nodes_tf" checked>Target TF (Outdegree = 0)</input>
|rna_od260/280=2.07
<br /><input type="checkbox" id="cyto_nodes_motif" checked>MOTIF</input>
|rna_position=I6
</div>
|rna_rin=
<div id="properties_panel" style="height: 540px;">
|rna_sample_type=total RNA
<div>
|rna_tube_id=109I6
<table id="nodes_list" class="wikitable">
|rna_weight_ug=35.40051
</table>
|sample_age=60
</div>
|sample_cell_catalog=CRL-2335
<div>
|sample_cell_line=HCC1806
<table id="edges_list" class="wikitable">
|sample_cell_lot=
</table>
|sample_cell_type=unclassifiable
</div>
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
</div>
|sample_company=ATCC
<div id="export_panel">
|sample_description=
<label class="export">Export Network:</label>
|sample_dev_stage=
  <button id="btn_exportGraphml">graphml</button>
|sample_disease=acantholytic squamous carcinoma
  <button id="btn_exportXgmml">xgmml</button>
|sample_donor(cell lot)=
  <button id="btn_exportSIF">sif</button>
|sample_ethnicity=B
  <button id="btn_exportJSON">JSON</button>
|sample_experimental_condition=
<label class="export">Export Image:</label>
|sample_id=10717
  <button id="btn_exportPDF">PDF</button>
|sample_note=
  <button id="btn_exportPNG">PNG</button>
|sample_sex=female
  <button id="btn_exportSVG">SVG</button>
|sample_species=Human (Homo sapiens)
</div>
|sample_strain=
</div>
|sample_tissue=breast
 
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Revision as of 13:43, 5 June 2012

FF:10717-109I6, TF to Motif to TF network

Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.

Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).

LEGEND: TF , MOTIF ,
MOTIF->TF , TF->MOTIF

Nodes
Edges
TF->MOTIF
Promoters
0.00
1
Source TF (Outdegree = 1)
Target TF (Outdegree = 0)
MOTIF

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