UBERON:0005734: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005734
|name=tunica adventitia
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|def="The tunica externa, also known as the tunica adventitia, is the outermost layer of a blood vessel, su...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:23, 15 June 2012
| Name: | tunica adventitia | ||
|---|---|---|---|
| Definition: | "The tunica externa, also known as the tunica adventitia, is the outermost layer of a blood vessel, surrounding the tunica media. It is mainly composed of collagen. The collagen serves to anchor the blood vessel to nearby organs, giving it stability." [Wikipedia:Tunica_externa_%28vessels%29] | ||
| Xrefs: |
| ||
| Synonyms: |
"adventitia externa" EXACT [Wikipedia:Tunica_externa_%28vessels%29] "external coat" RELATED [Wikipedia:Tunica_externa_%28vessels%29] "tunica adventitia of vessel" EXACT [Wikipedia:Tunica_externa_%28vessels%29] | ||
| Comments: | TODO - note terminological problems. WP says tunica external layer of blood vessel. FMA says tunica externa = adventitia, and is FMA adventitia covers other kinds of vessels. Here we opt for a lengthier name that attempts to disambiguate. There is no precise FMA equivalent, as FMA has tunica externa of arteries, veins, genital ducts etc as siblings |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005742(adventitia) |
|---|---|
| part_of: | UBERON:0000055(vessel) |
Children
| is a: | UBERON:0004664 (aorta tunica adventitia),UBERON:0007240 (tunica adventitia of artery) |
|---|---|
| part of: | CL:1000306 (fibroblast of tunica adventitia of artery) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11245-116E3 (Fibroblast - Aortic Adventitial, donor1)
- 11326-117E3 (Fibroblast - Aortic Adventitial, donor2)
- 11401-118D6 (Fibroblast - Aortic Adventitial, donor3)
- 14309-155C7
- 14310-155C8 (Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction))
- 14311-155C9 (Fibroblast - Aortic Adventitial, donor3 (nuclear fraction))
- 14330-155F1
- 14331-155F2 (Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction))
- 14332-155F3 (Fibroblast - Aortic Adventitial, donor2 (nuclear fraction))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005734 (tunica adventitia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.01e-74 | FFCP PHASE2:Hg19::chr4:67298860..67298867,-#_dfa700afe2de2407398c607a900a5068 | p@chr4:67298860..67298867, - |
| 2.01e-74 | FFCP PHASE1:Hg19::chr4:67298860..67298867,-#_dfa700afe2de2407398c607a900a5068 | p@chr4:67298860..67298867, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_30cc8d5644a1e793950de934cc03e68b | p@chr7:22687639..22687644, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_30cc8d5644a1e793950de934cc03e68b | p@chr7:22687639..22687644, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr5:93904635..93904644,+#_30cc8d5644a1e793950de934cc03e68b | p@chr5:93904635..93904644, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr5:93904635..93904644,+#_30cc8d5644a1e793950de934cc03e68b | p@chr5:93904635..93904644, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr11:29207409..29207435,+#_a0d12692733eda23e9d3ca539a144249 | p@chr11:29207409..29207435, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr11:29207409..29207435,+#_a0d12692733eda23e9d3ca539a144249 | p@chr11:29207409..29207435, + |
| 5.94e-56 | FFCP PHASE1:Hg19::chr3:46607836..46607847,-#_5149c58db88b24e351626a17172e0bda | p5@LRRC2 |
| 5.94e-56 | FFCP PHASE2:Hg19::chr3:46607836..46607847,-#_5149c58db88b24e351626a17172e0bda | p5@LRRC2 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:129522281..129522284,-#_e09a1af5290384b3b9385aeb19820034 | p@chr8:129522281..129522284, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:14109718..14109721,+#_e09a1af5290384b3b9385aeb19820034 | p@chr5:14109718..14109721, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr21:28955184..28955188,+#_e09a1af5290384b3b9385aeb19820034 | p@chr21:28955184..28955188, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr11:29331768..29331769,-#_e09a1af5290384b3b9385aeb19820034 | p@chr11:29331768..29331769, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr9:118413835..118413843,-#_e09a1af5290384b3b9385aeb19820034 | p@chr9:118413835..118413843, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:107870700..107870705,-#_e09a1af5290384b3b9385aeb19820034 | p@chr8:107870700..107870705, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:68614207..68614210,-#_e09a1af5290384b3b9385aeb19820034 | p@chr14:68614207..68614210, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:216588131..216588134,+#_e09a1af5290384b3b9385aeb19820034 | p@chr2:216588131..216588134, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:29800057..29800074,+#_e09a1af5290384b3b9385aeb19820034 | p@chr3:29800057..29800074, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:151537893..151537898,-#_e09a1af5290384b3b9385aeb19820034 | p@chr2:151537893..151537898, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr9:118413835..118413843,-#_e09a1af5290384b3b9385aeb19820034 | p@chr9:118413835..118413843, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:84979566..84979573,-#_e09a1af5290384b3b9385aeb19820034 | p@chr13:84979566..84979573, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:55327810..55327812,-#_e09a1af5290384b3b9385aeb19820034 | p@chr2:55327810..55327812, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:199267284..199267291,+#_e09a1af5290384b3b9385aeb19820034 | p@chr1:199267284..199267291, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:47835322..47835327,-#_e09a1af5290384b3b9385aeb19820034 | p@chr7:47835322..47835327, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:151537893..151537898,-#_e09a1af5290384b3b9385aeb19820034 | p@chr2:151537893..151537898, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:98699947..98699957,-#_e09a1af5290384b3b9385aeb19820034 | p@chr3:98699947..98699957, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:76108116..76108123,-#_e09a1af5290384b3b9385aeb19820034 | p@chr12:76108116..76108123, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:84979566..84979573,-#_e09a1af5290384b3b9385aeb19820034 | p@chr13:84979566..84979573, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:32133423..32133424,+#_e09a1af5290384b3b9385aeb19820034 | p@chr7:32133423..32133424, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr17:62679110..62679113,+#_e09a1af5290384b3b9385aeb19820034 | p@chr17:62679110..62679113, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:219498496..219498503,-#_e09a1af5290384b3b9385aeb19820034 | p@chr1:219498496..219498503, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:84807360..84807364,+#_e09a1af5290384b3b9385aeb19820034 | p@chr7:84807360..84807364, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr11:36796505..36796529,+#_e09a1af5290384b3b9385aeb19820034 | p@chr11:36796505..36796529, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:216588131..216588134,+#_e09a1af5290384b3b9385aeb19820034 | p@chr2:216588131..216588134, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:68614207..68614210,-#_e09a1af5290384b3b9385aeb19820034 | p@chr14:68614207..68614210, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:226851965..226851967,+#_e09a1af5290384b3b9385aeb19820034 | p@chr1:226851965..226851967, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:140070083..140070090,+#_e09a1af5290384b3b9385aeb19820034 | p@chr6:140070083..140070090, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:140070083..140070090,+#_e09a1af5290384b3b9385aeb19820034 | p@chr6:140070083..140070090, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr11:10349108..10349113,+#_e09a1af5290384b3b9385aeb19820034 | p@chr11:10349108..10349113, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:77703570..77703577,+#_e09a1af5290384b3b9385aeb19820034 | p@chr4:77703570..77703577, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:76175230..76175237,-#_e09a1af5290384b3b9385aeb19820034 | p@chr12:76175230..76175237, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:32133423..32133424,+#_e09a1af5290384b3b9385aeb19820034 | p@chr7:32133423..32133424, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr17:62679110..62679113,+#_e09a1af5290384b3b9385aeb19820034 | p@chr17:62679110..62679113, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:84807360..84807364,+#_e09a1af5290384b3b9385aeb19820034 | p@chr7:84807360..84807364, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:77703570..77703577,+#_e09a1af5290384b3b9385aeb19820034 | p@chr4:77703570..77703577, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:23158454..23158473,-#_e09a1af5290384b3b9385aeb19820034 | p@chr14:23158454..23158473, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:23158454..23158473,-#_e09a1af5290384b3b9385aeb19820034 | p@chr14:23158454..23158473, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:226851965..226851967,+#_e09a1af5290384b3b9385aeb19820034 | p@chr1:226851965..226851967, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:54248451..54248453,-#_e09a1af5290384b3b9385aeb19820034 | p@chr10:54248451..54248453, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:163602194..163602199,-#_e09a1af5290384b3b9385aeb19820034 | p@chr5:163602194..163602199, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:29331768..29331769,-#_e09a1af5290384b3b9385aeb19820034 | p@chr11:29331768..29331769, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:37772283..37772287,+#_e09a1af5290384b3b9385aeb19820034 | p@chr5:37772283..37772287, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:156878186..156878199,-#_e09a1af5290384b3b9385aeb19820034 | p71@CCNL1 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:141105574..141105581,-#_e09a1af5290384b3b9385aeb19820034 | p@chr3:141105574..141105581, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr19:43584268..43584275,+#_e09a1af5290384b3b9385aeb19820034 | p@chr19:43584268..43584275, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:123376383..123376386,+#_e09a1af5290384b3b9385aeb19820034 | p@chr8:123376383..123376386, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:18807662..18807665,-#_e09a1af5290384b3b9385aeb19820034 | p@chr2:18807662..18807665, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:76108116..76108123,-#_e09a1af5290384b3b9385aeb19820034 | p@chr12:76108116..76108123, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr19:43584268..43584275,+#_e09a1af5290384b3b9385aeb19820034 | p@chr19:43584268..43584275, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:18807662..18807665,-#_e09a1af5290384b3b9385aeb19820034 | p@chr2:18807662..18807665, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:129522281..129522284,-#_e09a1af5290384b3b9385aeb19820034 | p@chr8:129522281..129522284, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:163602194..163602199,-#_e09a1af5290384b3b9385aeb19820034 | p@chr5:163602194..163602199, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:37772283..37772287,+#_e09a1af5290384b3b9385aeb19820034 | p@chr5:37772283..37772287, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:162943708..162943739,+#_e09a1af5290384b3b9385aeb19820034 | p@chr2:162943708..162943739, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:36796505..36796529,+#_e09a1af5290384b3b9385aeb19820034 | p@chr11:36796505..36796529, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:14109718..14109721,+#_e09a1af5290384b3b9385aeb19820034 | p@chr5:14109718..14109721, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr21:28955184..28955188,+#_e09a1af5290384b3b9385aeb19820034 | p@chr21:28955184..28955188, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:107870700..107870705,-#_e09a1af5290384b3b9385aeb19820034 | p@chr8:107870700..107870705, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr10:54248451..54248453,-#_e09a1af5290384b3b9385aeb19820034 | p@chr10:54248451..54248453, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:156878186..156878199,-#_e09a1af5290384b3b9385aeb19820034 | p71@CCNL1 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:57128349..57128352,+#_e09a1af5290384b3b9385aeb19820034 | p@chr6:57128349..57128352, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:162943708..162943739,+#_e09a1af5290384b3b9385aeb19820034 | p@chr2:162943708..162943739, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:141105574..141105581,-#_e09a1af5290384b3b9385aeb19820034 | p@chr3:141105574..141105581, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:29800057..29800074,+#_e09a1af5290384b3b9385aeb19820034 | p@chr3:29800057..29800074, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:10349108..10349113,+#_e09a1af5290384b3b9385aeb19820034 | p@chr11:10349108..10349113, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:123376383..123376386,+#_e09a1af5290384b3b9385aeb19820034 | p@chr8:123376383..123376386, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:55327810..55327812,-#_e09a1af5290384b3b9385aeb19820034 | p@chr2:55327810..55327812, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:199267284..199267291,+#_e09a1af5290384b3b9385aeb19820034 | p@chr1:199267284..199267291, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:47835322..47835327,-#_e09a1af5290384b3b9385aeb19820034 | p@chr7:47835322..47835327, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:76175230..76175237,-#_e09a1af5290384b3b9385aeb19820034 | p@chr12:76175230..76175237, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:98699947..98699957,-#_e09a1af5290384b3b9385aeb19820034 | p@chr3:98699947..98699957, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:57128349..57128352,+#_e09a1af5290384b3b9385aeb19820034 | p@chr6:57128349..57128352, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:219498496..219498503,-#_e09a1af5290384b3b9385aeb19820034 | p@chr1:219498496..219498503, - |
| 5.14e-50 | FFCP PHASE1:Hg19::chr2:72789203..72789224,-#_2533cc4b4a423d0bc35471f727186ee8 | p@chr2:72789203..72789224, - |
| 5.14e-50 | FFCP PHASE2:Hg19::chr2:72789203..72789224,-#_2533cc4b4a423d0bc35471f727186ee8 | p@chr2:72789203..72789224, - |
| 5.14e-50 | FFCP PHASE1:Hg19::chr6:136397717..136397720,-#_2533cc4b4a423d0bc35471f727186ee8 | p@chr6:136397717..136397720, - |
| 5.14e-50 | FFCP PHASE2:Hg19::chr6:136397717..136397720,-#_2533cc4b4a423d0bc35471f727186ee8 | p@chr6:136397717..136397720, - |
| 2.53e-41 | FFCP PHASE1:Hg19::chr9:13707925..13707941,+#_4b2188c108294c7e5b2a62e40bc9c5a4 | p@chr9:13707925..13707941, + |
| 2.53e-41 | FFCP PHASE2:Hg19::chr9:13707925..13707941,+#_4b2188c108294c7e5b2a62e40bc9c5a4 | p@chr9:13707925..13707941, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:170459091..170459101,-#_27430486e5d566fc753a7fda631dcc0d | p4@ENST00000473110 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:170459091..170459101,-#_27430486e5d566fc753a7fda631dcc0d | p4@ENST00000473110 |
| 1.81e-40 | FFCP PHASE1:Hg19::chr11:28779555..28779601,+#_0032199636c2e797e848632a9c333979 | p@chr11:28779555..28779601, + |
| 1.81e-40 | FFCP PHASE2:Hg19::chr11:28779555..28779601,+#_0032199636c2e797e848632a9c333979 | p@chr11:28779555..28779601, + |
| 2.22e-40 | FFCP PHASE2:Hg19::chr8:120063756..120063761,-#_de77546caaf86c96072c4166adc95912 | p@chr8:120063756..120063761, - |
| 2.22e-40 | FFCP PHASE1:Hg19::chr8:11373722..11373763,+#_de77546caaf86c96072c4166adc95912 | p@chr8:11373722..11373763, + |
| 2.22e-40 | FFCP PHASE1:Hg19::chr1:238811500..238811513,+#_de77546caaf86c96072c4166adc95912 | p@chr1:238811500..238811513, + |
| 2.22e-40 | FFCP PHASE2:Hg19::chr8:11373722..11373763,+#_de77546caaf86c96072c4166adc95912 | p@chr8:11373722..11373763, + |
| 2.22e-40 | FFCP PHASE2:Hg19::chr1:238811500..238811513,+#_de77546caaf86c96072c4166adc95912 | p@chr1:238811500..238811513, + |
| 2.22e-40 | FFCP PHASE1:Hg19::chr8:120063756..120063761,-#_de77546caaf86c96072c4166adc95912 | p@chr8:120063756..120063761, - |
