CL:0000186: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000186
|name=myofibroblast cell
|namespace=cell
|def="An animal cell that has characteristics of both a fibroblast cell and a smooth muscle cell." [GOC:dsd, G...") |
No edit summary |
||
| Line 6: | Line 6: | ||
|xref= | |xref= | ||
|is_a=CL:0000183;;CL:0000548;;CL:0002371 | |is_a=CL:0000183;;CL:0000548;;CL:0002371 | ||
|synonym="MFB" EXACT [PMID: 8731193] | |synonym="MFB" EXACT [PMID:8731193] | ||
|comment=Myofibroblasts are alpha-SMA-positive, CD34-negative, CD45-negative. They are reportedly capable of secreting IL-1beta, IL-6, and TNF-alpha. | |comment=Myofibroblasts are alpha-SMA-positive, CD34-negative, CD45-negative. They are reportedly capable of secreting IL-1beta, IL-6, and TNF-alpha. | ||
|alt_id= | |alt_id= | ||
| Line 20: | Line 20: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:36, 15 June 2012
| Name: | myofibroblast cell |
|---|---|
| Namespace: | cell |
| Definition: | "An animal cell that has characteristics of both a fibroblast cell and a smooth muscle cell." [GOC:dsd, GOC:tfm, MESH:D058628, PMID:19800625, PMID:20630469] |
| Synonyms: | "MFB" EXACT [PMID:8731193] |
| Comments: | Myofibroblasts are alpha-SMA-positive, CD34-negative, CD45-negative. They are reportedly capable of secreting IL-1beta, IL-6, and TNF-alpha. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000183(contractile cell),CL:0000548(animal cell),CL:0002371(somatic cell) |
|---|
Children
| is a: | CL:0002576 (perineural cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11499-119F5 (Perineurial Cells, donor1)
- 11579-120F4 (Perineurial Cells, donor2)
- 11660-122F4
Mouse (Mus musculus)
- 11499-119F5 (Perineurial Cells, donor1)
- 11579-120F4 (Perineurial Cells, donor2)
- 11660-122F4
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000186 (myofibroblast cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
