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(Created page with "{{CL |id=CL:0000838 |name=lymphoid lineage restricted progenitor cell |namespace=cell |def="A progenitor cell restricted to the lymphoid lineage." [GOC:add, GOC:tfm] |xre...")
 
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|id=CL:0000838
|id=CL:0000838
|name=lymphoid lineage restricted progenitor cell
|name=lymphoid lineage restricted progenitor cell
|namespace=cell
|namespace=efo
|def="A progenitor cell restricted to the lymphoid lineage." [GOC:add, GOC:tfm]
|def="A progenitor cell restricted to the lymphoid lineage." [GOC:add, GOC:tfm]
|xref=BTO:0004731;;FMA:70338
|xref=BTO:0004731;;FMA:70338
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:39, 15 June 2012

Name:lymphoid lineage restricted progenitor cell
Namespace:efo
Definition:"A progenitor cell restricted to the lymphoid lineage." [GOC:add, GOC:tfm]
Xrefs:
links:

BTO:0004731

FMA:70338
Synonyms: "lymphoid progenitor cell" BROAD []
Comments:Note that this is a class of cell types, not an identified single cell type.


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002031(hematopoietic lineage restricted progenitor cell)
disjoint_from:CL:0000839(myeloid lineage restricted progenitor cell)



Children


is a:CL:0000825 (pro-NK cell),CL:0000826 (pro-B cell),CL:0000827 (pro-T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000838 (lymphoid lineage restricted progenitor cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.81e-84FFCP PHASE1:Hg19::chr5:150521260..150521277,-#_11012cd08a06c2df6e51e83325059004p5@ANXA6
3.81e-84FFCP PHASE2:Hg19::chr5:150521260..150521277,-#_11012cd08a06c2df6e51e83325059004p5@ANXA6
2.59e-80FFCP PHASE2:Hg19::chr11:67206142..67206156,-#_09fc26915aa3305365a6ff3e398ca967p@chr11:67206142..67206156, -
2.59e-80FFCP PHASE1:Hg19::chr11:67206142..67206156,-#_09fc26915aa3305365a6ff3e398ca967p@chr11:67206142..67206156, -
2.5e-78FFCP PHASE1:Hg19::chr9:140356580..140356585,+#_9e22b2ee4ab683f49d3d45061feeebc9p@chr9:140356580..140356585, +
2.5e-78FFCP PHASE2:Hg19::chr9:140356580..140356585,+#_9e22b2ee4ab683f49d3d45061feeebc9p@chr9:140356580..140356585, +
5.72e-76FFCP PHASE2:Hg19::chr12:9822355..9822366,+#_d7fe76c25e25c58d0d190b3e40cd2c94p3@CLEC2D
5.72e-76FFCP PHASE1:Hg19::chr12:9822355..9822366,+#_d7fe76c25e25c58d0d190b3e40cd2c94p3@CLEC2D
2.33e-74FFCP PHASE2:Hg19::chr1:27953007..27953025,-#_04fbf9f13ae2cd246809447a061f8b19p12@FGR
2.33e-74FFCP PHASE1:Hg19::chr1:27953007..27953025,-#_04fbf9f13ae2cd246809447a061f8b19p12@FGR
3.52e-74FFCP PHASE1:Hg19::chr9:35650572..35650659,-#_33a5528b3b4be34bf609e99f48c8d366p2@SIT1
3.52e-74FFCP PHASE2:Hg19::chr9:35650572..35650659,-#_33a5528b3b4be34bf609e99f48c8d366p2@SIT1
8.62e-74FFCP PHASE2:Hg19::chr17:38020481..38020506,-#_fbc308d1c0de8e18558aac5e0a2f6c85p7@IKZF3
8.62e-74FFCP PHASE1:Hg19::chr17:38020481..38020506,-#_fbc308d1c0de8e18558aac5e0a2f6c85p7@IKZF3
2.43e-73FFCP PHASE2:Hg19::chr6:31540403..31540430,-#_d166ebaf6b83762a16457d3d57e57d1bp1@LOC100287329
2.43e-73FFCP PHASE1:Hg19::chr6:31540403..31540430,-#_d166ebaf6b83762a16457d3d57e57d1bp1@LOC100287329
5.96e-73FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_3f2c9e4d1f61192d17723a6126190f4bp@chr4:32335511..32335532, +
5.96e-73FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_3f2c9e4d1f61192d17723a6126190f4bp@chr4:32335511..32335532, +
6.05e-73FFCP PHASE1:Hg19::chr17:37934188..37934202,-#_1ca07968d6fcc9c3c770c798010c8febp8@IKZF3
6.05e-73FFCP PHASE2:Hg19::chr17:37934188..37934202,-#_1ca07968d6fcc9c3c770c798010c8febp8@IKZF3
7.04e-73FFCP PHASE1:Hg19::chr1:207096529..207096554,-#_f7f7e433b21786f823f74fb09a1f2c88p5@FAIM3
7.04e-73FFCP PHASE2:Hg19::chr1:207096529..207096554,-#_f7f7e433b21786f823f74fb09a1f2c88p5@FAIM3
7.63e-73FFCP PHASE1:Hg19::chr11:118754537..118754552,+#_df622601f8e6a014b7a702d3d9cc8516p3@CXCR5
7.63e-73FFCP PHASE2:Hg19::chr11:118754537..118754552,+#_df622601f8e6a014b7a702d3d9cc8516p3@CXCR5
1.47e-72FFCP PHASE2:Hg19::chr8:71564073..71564104,+#_aae2a24721752070a42d47bdd568e9f4p@chr8:71564073..71564104, +
1.47e-72FFCP PHASE1:Hg19::chr8:71564073..71564104,+#_aae2a24721752070a42d47bdd568e9f4p@chr8:71564073..71564104, +
3.17e-72FFCP PHASE2:Hg19::chr11:64107589..64107604,-#_5cbc29d3e8f5b2dd460beb4ded633f30p@chr11:64107589..64107604, -
3.17e-72FFCP PHASE1:Hg19::chr11:64107589..64107604,-#_5cbc29d3e8f5b2dd460beb4ded633f30p@chr11:64107589..64107604, -
3.62e-72FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_626a323720b9db2b7fc1bdb4684ba784p@chr5:123440767..123440778, +
3.62e-72FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_626a323720b9db2b7fc1bdb4684ba784p@chr5:123440767..123440778, +
3.62e-72FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_626a323720b9db2b7fc1bdb4684ba784p@chr7:132751140..132751183, +
3.62e-72FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_626a323720b9db2b7fc1bdb4684ba784p@chr4:32422919..32422935, +
3.62e-72FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_626a323720b9db2b7fc1bdb4684ba784p@chr7:132751140..132751183, +
3.62e-72FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_626a323720b9db2b7fc1bdb4684ba784p@chr5:123440486..123440504, -
3.62e-72FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_626a323720b9db2b7fc1bdb4684ba784p@chr6:99215016..99215036, +
3.62e-72FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_626a323720b9db2b7fc1bdb4684ba784p@chr4:32422919..32422935, +
3.62e-72FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_626a323720b9db2b7fc1bdb4684ba784p@chr6:99215016..99215036, +
3.62e-72FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_626a323720b9db2b7fc1bdb4684ba784p@chr5:123440486..123440504, -
1.77e-71FFCP PHASE2:Hg19::chr14:23000807..23000874,+#_a855506ab3eeca3abb7362050b62f127p1@TRAJ12
1.77e-71FFCP PHASE1:Hg19::chr14:23000807..23000874,+#_a855506ab3eeca3abb7362050b62f127p1@TRAJ12
5.08e-69FFCP PHASE2:Hg19::chr14:20811696..20811707,+#_da552bf11df0621927cc91dead7762d9p4@PARP2
5.08e-69FFCP PHASE1:Hg19::chr14:20811696..20811707,+#_da552bf11df0621927cc91dead7762d9p4@PARP2
9.05e-69FFCP PHASE2:Hg19::chr17:38020607..38020621,-#_d98f002b9364b8f849e820ad142b3609p9@IKZF3
9.05e-69FFCP PHASE1:Hg19::chr17:38020607..38020621,-#_d98f002b9364b8f849e820ad142b3609p9@IKZF3
1.3e-68FFCP PHASE2:Hg19::chr17:37934204..37934241,-#_8595d6f7129636307b1dabdacfc4fd5dp3@IKZF3
1.3e-68FFCP PHASE1:Hg19::chr17:37934204..37934241,-#_8595d6f7129636307b1dabdacfc4fd5dp3@IKZF3
3.96e-68FFCP PHASE1:Hg19::chr8:28747682..28747705,-#_3ead3f54d3d71ae64842d4d54a2931dcp2@INTS9
3.96e-68FFCP PHASE2:Hg19::chr8:28747682..28747705,-#_3ead3f54d3d71ae64842d4d54a2931dcp2@INTS9
8.17e-68FFCP PHASE2:Hg19::chr22:24823517..24823546,+#_38ee4a5c5617568906a5642eaac39056p5@ADORA2A
8.17e-68FFCP PHASE1:Hg19::chr22:24823517..24823546,+#_38ee4a5c5617568906a5642eaac39056p5@ADORA2A
8.38e-68FFCP PHASE1:Hg19::chr11:64107610..64107648,-#_2390dcfc8c9986a19d6819c355a688dap@chr11:64107610..64107648, -
8.38e-68FFCP PHASE2:Hg19::chr11:64107610..64107648,-#_2390dcfc8c9986a19d6819c355a688dap@chr11:64107610..64107648, -
1.26e-67FFCP PHASE1:Hg19::chr17:38020557..38020572,-#_337dcee9483e40c99a35db6e28c31e1dp4@IKZF3
1.26e-67FFCP PHASE2:Hg19::chr17:38020557..38020572,-#_337dcee9483e40c99a35db6e28c31e1dp4@IKZF3
1.62e-67FFCP PHASE1:Mm9::chr4:63522330..63522352,-#_dc7fec3e9e81474e9cfaa0fe06621e1bp4@Tnfsf8
1.62e-67FFCP PHASE2:Mm9::chr4:63522330..63522352,-#_dc7fec3e9e81474e9cfaa0fe06621e1bp4@Tnfsf8
1.94e-67FFCP PHASE1:Hg19::chr3:107844539..107844555,-#_b5289c57fd9cf7284fc3570aed2e54e4p@chr3:107844539..107844555, -
1.94e-67FFCP PHASE2:Hg19::chr3:107844539..107844555,-#_b5289c57fd9cf7284fc3570aed2e54e4p@chr3:107844539..107844555, -
2.01e-67FFCP PHASE1:Hg19::chr19:39108644..39108658,-#_1325aeb0dd52e678658c7233792fa977p2@MAP4K1
2.01e-67FFCP PHASE2:Hg19::chr19:39108644..39108658,-#_1325aeb0dd52e678658c7233792fa977p2@MAP4K1
4.33e-67FFCP PHASE2:Hg19::chr17:38020516..38020544,-#_9cecee08a1f88e9222bf9cf406eb577ap5@IKZF3
4.33e-67FFCP PHASE1:Hg19::chr17:38020516..38020544,-#_9cecee08a1f88e9222bf9cf406eb577ap5@IKZF3
4.95e-67FFCP PHASE2:Hg19::chr4:40198602..40198614,+#_64b139505628c978e2e204b02d0e04c2p3@RHOH
4.95e-67FFCP PHASE1:Hg19::chr4:40198602..40198614,+#_64b139505628c978e2e204b02d0e04c2p3@RHOH
8.92e-67FFCP PHASE2:Hg19::chr6:159528034..159528048,+#_8244e10f65916615b0354da4a5bfbe56p@chr6:159528034..159528048, +
8.92e-67FFCP PHASE1:Hg19::chr6:159528034..159528048,+#_8244e10f65916615b0354da4a5bfbe56p@chr6:159528034..159528048, +
1.45e-66FFCP PHASE1:Hg19::chr1:207096678..207096699,+#_777e9cb69932cc72ace4b813c124e808p@chr1:207096678..207096699, +
1.45e-66FFCP PHASE2:Hg19::chr1:207096678..207096699,+#_777e9cb69932cc72ace4b813c124e808p@chr1:207096678..207096699, +
1.69e-66FFCP PHASE1:Hg19::chr5:150521234..150521251,-#_b26cd4cbe8e504ee6392fd5593939930p4@ANXA6
1.69e-66FFCP PHASE2:Hg19::chr5:150521234..150521251,-#_b26cd4cbe8e504ee6392fd5593939930p4@ANXA6
3.58e-66FFCP PHASE1:Hg19::chr7:50348268..50348366,+#_b39bca1759c20fdd7964bfb17bee5c98p4@IKZF1
3.58e-66FFCP PHASE2:Hg19::chr7:50348268..50348366,+#_b39bca1759c20fdd7964bfb17bee5c98p4@IKZF1
3.67e-66FFCP PHASE1:Hg19::chr11:67203630..67203643,-#_ff9e6aa74846c0b00bdaa1bcb5508792p2@PTPRCAP
3.67e-66FFCP PHASE2:Hg19::chr11:67203630..67203643,-#_ff9e6aa74846c0b00bdaa1bcb5508792p2@PTPRCAP
5.16e-66FFCP PHASE1:Hg19::chr9:98257510..98257517,-#_cccd33da91511ca7f326413e87dd90eap@chr9:98257510..98257517, -
5.16e-66FFCP PHASE2:Hg19::chr9:98257510..98257517,-#_cccd33da91511ca7f326413e87dd90eap@chr9:98257510..98257517, -
6.69e-66FFCP PHASE2:Mm9::chr18:80806450..80806462,-#_de9caa7c087ed36b7d4b463bbe2ac2fbp@chr18:80806450..80806462, -
6.69e-66FFCP PHASE2:Mm9::chr5:123439299..123439324,+#_de9caa7c087ed36b7d4b463bbe2ac2fbp3@ENSMUST00000148466, p3@uc008zmw.1
6.69e-66FFCP PHASE1:Mm9::chr4:129252530..129252541,-#_de9caa7c087ed36b7d4b463bbe2ac2fbp@chr4:129252530..129252541, -
6.69e-66FFCP PHASE1:Mm9::chr18:80806450..80806462,-#_de9caa7c087ed36b7d4b463bbe2ac2fbp@chr18:80806450..80806462, -
6.69e-66FFCP PHASE2:Mm9::chr4:129252530..129252541,-#_de9caa7c087ed36b7d4b463bbe2ac2fbp@chr4:129252530..129252541, -
6.69e-66FFCP PHASE1:Mm9::chr5:123439299..123439324,+#_de9caa7c087ed36b7d4b463bbe2ac2fbp3@ENSMUST00000148466, p3@uc008zmw.1
7.82e-66FFCP PHASE1:Mm9::chr6:99045714..99045725,+#_9a4e302721b3fa259cce8fb832c424d4p@chr6:99045714..99045725, +
7.82e-66FFCP PHASE2:Mm9::chr6:99045714..99045725,+#_9a4e302721b3fa259cce8fb832c424d4p@chr6:99045714..99045725, +
1.07e-65FFCP PHASE1:Mm9::chr17:52301956..52301965,-#_cbe2ea8beff4b3bb0838975d5964a5a0p@chr17:52301956..52301965, -
1.07e-65FFCP PHASE2:Mm9::chr17:52301956..52301965,-#_cbe2ea8beff4b3bb0838975d5964a5a0p@chr17:52301956..52301965, -
1.42e-65FFCP PHASE2:Hg19::chr4:114683412..114683431,-#_ca2ed39fa9f86ee74bf22812183238a1p10@CAMK2D
1.42e-65FFCP PHASE1:Hg19::chr4:114683412..114683431,-#_ca2ed39fa9f86ee74bf22812183238a1p10@CAMK2D
1.75e-65FFCP PHASE1:Hg19::chr13:30951074..30951122,-#_dbf8c7b30f10110947f72536468e9654p1@LINC00426
1.75e-65FFCP PHASE2:Hg19::chr13:30951074..30951122,-#_dbf8c7b30f10110947f72536468e9654p1@LINC00426
2.3e-65FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_6a061115a1ed17c2676c1c52a6330b63p2@CU689419
2.3e-65FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_6a061115a1ed17c2676c1c52a6330b63p2@CU689419
2.93e-65FFCP PHASE1:Mm9::chr11:98801228..98801258,+#_0029812510a4bfa4ea1df259a3007d8ap@chr11:98801228..98801258, +
2.93e-65FFCP PHASE2:Mm9::chr11:98801228..98801258,+#_0029812510a4bfa4ea1df259a3007d8ap@chr11:98801228..98801258, +
4.68e-65FFCP PHASE2:Hg19::chr17:43487793..43487803,-#_526f4a73d118e89cded595732114c833p8@ARHGAP27
4.68e-65FFCP PHASE1:Hg19::chr17:43487793..43487803,-#_526f4a73d118e89cded595732114c833p8@ARHGAP27
5.33e-65FFCP PHASE1:Mm9::chr11:11590836..11590851,+#_b3c9e824001eb21e558866f3e50dfbdep@chr11:11590836..11590851, +
5.33e-65FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_b3c9e824001eb21e558866f3e50dfbdep@chr6:48637679..48637692, +
5.33e-65FFCP PHASE1:Mm9::chr17:71199497..71199527,+#_b3c9e824001eb21e558866f3e50dfbdep@chr17:71199497..71199527, +
5.33e-65FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_b3c9e824001eb21e558866f3e50dfbdep1@ENSMUST00000103733

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