CL:0002138: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002138
|name=endothelial cell of lymphatic vessel
|namespace=cell
|def="A endothelial cell of a lymphatic vessel. The border of the oak leaf-shaped endothelia...") |
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|xref=BTO:0004167;;FMA:68458 | |xref=BTO:0004167;;FMA:68458 | ||
|is_a=CL:0002139 | |is_a=CL:0002139 | ||
|synonym= | |synonym="lymphatic endothelial cell" EXACT [] | ||
|comment= | |comment= | ||
|alt_id=CL:1000421 | |alt_id=CL:1000421 | ||
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|adjacent_to= | |adjacent_to= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0005022 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of=UBERON:0001473 | |part_of=UBERON:0001473 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
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Revision as of 17:39, 15 June 2012
| Name: | endothelial cell of lymphatic vessel | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A endothelial cell of a lymphatic vessel. The border of the oak leaf-shaped endothelial cell of initial lymphatics are joined by specialized buttons. The discontinuous feature of buttons distinguishes them from zippers in collecting lymphatics, but both types of junctions are composed of proteins typical of adherens junctions and tight junctions found in the endothelium of blood vessels. Buttons seal the sides of flaps of the oak leaf-shaped endothelial cell, leaving open the tips of flaps as routes for fluid entry without disassembly and reformation of intercellular junctions." [GOC:tfm, PMID:17846148] | ||
| Xrefs: |
| ||
| Synonyms: | "lymphatic endothelial cell" EXACT [] | ||
| Alt_id: | CL:1000421 | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-08-24T02:05:28Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002139(endothelial cell of vascular tree) |
|---|---|
| develops_from: | CL:0005022(vascular lymphangioblast) |
| part_of: | UBERON:0001473(lymphatic vessel) |
Children
| derives from: | FF:0000049 (human lymphatic endothelial cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11317-117D3 (Endothelial Cells - Lymphatic, donor2)
- 11393-118C7 (Endothelial Cells - Lymphatic, donor3)
- 12260-130A1 (Lymphatic Endothelial cells response to VEGFC)
- 12261-130A2 (Lymphatic Endothelial cells response to VEGFC)
- 12262-130A3 (Lymphatic Endothelial cells response to VEGFC)
- 12263-130A4 (Lymphatic Endothelial cells response to VEGFC)
- 12264-130A5 (Lymphatic Endothelial cells response to VEGFC)
- 12265-130A6 (Lymphatic Endothelial cells response to VEGFC)
- 12266-130A7 (Lymphatic Endothelial cells response to VEGFC)
... further results Mouse (Mus musculus)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11317-117D3 (Endothelial Cells - Lymphatic, donor2)
- 11393-118C7 (Endothelial Cells - Lymphatic, donor3)
- 12260-130A1 (Lymphatic Endothelial cells response to VEGFC)
- 12261-130A2 (Lymphatic Endothelial cells response to VEGFC)
- 12262-130A3 (Lymphatic Endothelial cells response to VEGFC)
- 12263-130A4 (Lymphatic Endothelial cells response to VEGFC)
- 12264-130A5 (Lymphatic Endothelial cells response to VEGFC)
- 12265-130A6 (Lymphatic Endothelial cells response to VEGFC)
- 12266-130A7 (Lymphatic Endothelial cells response to VEGFC)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002138 (endothelial cell of lymphatic vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.07e-135 | FFCP PHASE1:Hg19::chr9:13432964..13432971,-#_6a50ef612b11f34865aa7617761330de | p@chr9:13432964..13432971, - |
| 1.07e-135 | FFCP PHASE2:Hg19::chr9:13432964..13432971,-#_6a50ef612b11f34865aa7617761330de | p@chr9:13432964..13432971, - |
| 5.17e-105 | FFCP PHASE1:Hg19::chr1:65344872..65344880,-#_0a19f25d2835be6c2b813548f81d498b | p15@JAK1 |
| 5.17e-105 | FFCP PHASE2:Hg19::chr1:65344872..65344880,-#_0a19f25d2835be6c2b813548f81d498b | p15@JAK1 |
| 5.07e-102 | FFCP PHASE2:Hg19::chr3:30560368..30560379,+#_adaf34333ea191f83a77ea6e8a5f154c | p@chr3:30560368..30560379, + |
| 5.07e-102 | FFCP PHASE1:Hg19::chr3:30560368..30560379,+#_adaf34333ea191f83a77ea6e8a5f154c | p@chr3:30560368..30560379, + |
| 1.86e-98 | FFCP PHASE1:Hg19::chr17:28534912..28534942,-#_1e2f0b5d6fde11d90227c52c29689c6e | p@chr17:28534912..28534942, - |
| 1.86e-98 | FFCP PHASE2:Hg19::chr17:28534912..28534942,-#_1e2f0b5d6fde11d90227c52c29689c6e | p@chr17:28534912..28534942, - |
| 3.73e-91 | FFCP PHASE2:Hg19::chr2:56149881..56149899,-#_34b2bc2f78cf7478249568729581de40 | p14@EFEMP1 |
| 3.73e-91 | FFCP PHASE1:Hg19::chr2:56149881..56149899,-#_34b2bc2f78cf7478249568729581de40 | p14@EFEMP1 |
| 3.34e-87 | FFCP PHASE2:Hg19::chr19:48613876..48613886,-#_dfc93749e38457b10cd015e104e48b38 | p7@PLA2G4C |
| 3.34e-87 | FFCP PHASE1:Hg19::chr19:48613876..48613886,-#_dfc93749e38457b10cd015e104e48b38 | p7@PLA2G4C |
| 1.6e-85 | FFCP PHASE1:Hg19::chr6:74848034..74848043,+#_314e794efd543701f32203309de9667f | p@chr6:74848034..74848043, + |
| 1.6e-85 | FFCP PHASE2:Hg19::chr6:74848034..74848043,+#_314e794efd543701f32203309de9667f | p@chr6:74848034..74848043, + |
| 1.48e-75 | FFCP PHASE2:Hg19::chr6:5054373..5054392,-#_88ebd24f2060744a68f32e03f7c5efd8 | p1@AK126470 |
| 1.48e-75 | FFCP PHASE1:Hg19::chr6:5054373..5054392,-#_88ebd24f2060744a68f32e03f7c5efd8 | p1@AK126470 |
| 2.17e-75 | FFCP PHASE1:Hg19::chr7:79998842..79998855,+#_7cd6e5889553d267f07087ebdf0dd83a | p25@CD36 |
| 2.17e-75 | FFCP PHASE2:Hg19::chr7:79998842..79998855,+#_7cd6e5889553d267f07087ebdf0dd83a | p25@CD36 |
| 2.63e-75 | FFCP PHASE2:Hg19::chr3:145968441..145968451,-#_1264963ac8172556a327bc0ccb87dcfb | p17@PLSCR4 |
| 2.63e-75 | FFCP PHASE1:Hg19::chr3:145968441..145968451,-#_1264963ac8172556a327bc0ccb87dcfb | p17@PLSCR4 |
| 3.19e-75 | FFCP PHASE1:Hg19::chr2:33661536..33661549,+#_c4016d9c2c454929578033d5d92ca89d | p17@RASGRP3 |
| 3.19e-75 | FFCP PHASE2:Hg19::chr2:33661536..33661549,+#_c4016d9c2c454929578033d5d92ca89d | p17@RASGRP3 |
| 3.86e-75 | FFCP PHASE2:Hg19::chr9:13446440..13446456,+#_81f48dddef093d29f73b5c8deb1346d2 | p2@ENST00000428006 |
| 3.86e-75 | FFCP PHASE1:Hg19::chr9:13446440..13446456,+#_81f48dddef093d29f73b5c8deb1346d2 | p2@ENST00000428006 |
| 2.58e-74 | FFCP PHASE1:Hg19::chr17:28534879..28534889,-#_b406f06a4d7bf12c326e0a3d8688139d | p@chr17:28534879..28534889, - |
| 2.58e-74 | FFCP PHASE2:Hg19::chr12:46807404..46807413,+#_b406f06a4d7bf12c326e0a3d8688139d | p@chr12:46807404..46807413, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr12:46807404..46807413,+#_b406f06a4d7bf12c326e0a3d8688139d | p@chr12:46807404..46807413, + |
| 2.58e-74 | FFCP PHASE2:Hg19::chr17:28534879..28534889,-#_b406f06a4d7bf12c326e0a3d8688139d | p@chr17:28534879..28534889, - |
| 4.26e-74 | FFCP PHASE2:Hg19::chr7:79998905..79998917,+#_aad76360566331f74c87a4900f0f9c19 | p26@CD36 |
| 4.26e-74 | FFCP PHASE1:Hg19::chr7:79998905..79998917,+#_aad76360566331f74c87a4900f0f9c19 | p26@CD36 |
| 1.77e-72 | FFCP PHASE2:Hg19::chr8:30300216..30300245,+#_874aaae6d45b5578d068698fd73e1c98 | p10@RBPMS |
| 1.77e-72 | FFCP PHASE1:Hg19::chr8:30300216..30300245,+#_874aaae6d45b5578d068698fd73e1c98 | p10@RBPMS |
| 2.83e-66 | FFCP PHASE1:Hg19::chr2:33661526..33661535,+#_eedf83058fa1f6b19b670b13ff2ef189 | p23@RASGRP3 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr11:108794408..108794422,+#_eedf83058fa1f6b19b670b13ff2ef189 | p@chr11:108794408..108794422, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr1:66723029..66723041,+#_eedf83058fa1f6b19b670b13ff2ef189 | p54@PDE4B |
| 2.83e-66 | FFCP PHASE1:Hg19::chr11:108794408..108794422,+#_eedf83058fa1f6b19b670b13ff2ef189 | p@chr11:108794408..108794422, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr17:75873825..75873826,+#_eedf83058fa1f6b19b670b13ff2ef189 | p@chr17:75873825..75873826, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr11:108794429..108794441,+#_eedf83058fa1f6b19b670b13ff2ef189 | p@chr11:108794429..108794441, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr11:108794429..108794441,+#_eedf83058fa1f6b19b670b13ff2ef189 | p@chr11:108794429..108794441, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr4:114238344..114238353,+#_eedf83058fa1f6b19b670b13ff2ef189 | p58@ANK2 |
| 2.83e-66 | FFCP PHASE1:Hg19::chr17:75873825..75873826,+#_eedf83058fa1f6b19b670b13ff2ef189 | p@chr17:75873825..75873826, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr4:114238344..114238353,+#_eedf83058fa1f6b19b670b13ff2ef189 | p58@ANK2 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr2:33661526..33661535,+#_eedf83058fa1f6b19b670b13ff2ef189 | p23@RASGRP3 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr1:66723029..66723041,+#_eedf83058fa1f6b19b670b13ff2ef189 | p54@PDE4B |
| 1.5e-63 | FFCP PHASE2:Hg19::chr4:189881560..189881604,-#_4e4f70a0c76af9869c860a39000ce8f9 | p@chr4:189881560..189881604, - |
| 1.5e-63 | FFCP PHASE1:Hg19::chr4:189881560..189881604,-#_4e4f70a0c76af9869c860a39000ce8f9 | p@chr4:189881560..189881604, - |
| 2.87e-63 | FFCP PHASE2:Hg19::chr4:90857427..90857438,+#_9399607e63c1e5abac3fcc27f4913728 | p@chr4:90857427..90857438, + |
| 2.87e-63 | FFCP PHASE1:Hg19::chr4:90857427..90857438,+#_9399607e63c1e5abac3fcc27f4913728 | p@chr4:90857427..90857438, + |
| 3.26e-63 | FFCP PHASE1:Hg19::chr10:4823152..4823165,-#_c13d8ac99576df3915c102d06cf4f844 | p@chr10:4823152..4823165, - |
| 3.26e-63 | FFCP PHASE2:Hg19::chr10:4823152..4823165,-#_c13d8ac99576df3915c102d06cf4f844 | p@chr10:4823152..4823165, - |
| 7.06e-63 | FFCP PHASE1:Hg19::chr6:49534004..49534016,+#_4ce8b32198f7b8dda8bbe33978a70f7c | p@chr6:49534004..49534016, + |
| 7.06e-63 | FFCP PHASE2:Hg19::chr6:49534004..49534016,+#_4ce8b32198f7b8dda8bbe33978a70f7c | p@chr6:49534004..49534016, + |
| 1.53e-62 | FFCP PHASE2:Hg19::chr12:96841308..96841312,+#_b6aa45d92ebd1a3a0eaf7236f2ca4b09 | p@chr12:96841308..96841312, + |
| 1.53e-62 | FFCP PHASE1:Hg19::chr12:96841308..96841312,+#_b6aa45d92ebd1a3a0eaf7236f2ca4b09 | p@chr12:96841308..96841312, + |
| 8.15e-60 | FFCP PHASE2:Hg19::chr1:43917566..43917577,-#_bfdf603b9078241f5068e880892f58d7 | p6@HYI |
| 8.15e-60 | FFCP PHASE1:Hg19::chr1:43917566..43917577,-#_bfdf603b9078241f5068e880892f58d7 | p6@HYI |
| 9.96e-60 | FFCP PHASE2:Hg19::chr3:34262215..34262222,+#_6a49df615b094c3aa18fc61df806ffa6 | p@chr3:34262215..34262222, + |
| 9.96e-60 | FFCP PHASE1:Hg19::chr3:34262215..34262222,+#_6a49df615b094c3aa18fc61df806ffa6 | p@chr3:34262215..34262222, + |
| 1.22e-59 | FFCP PHASE1:Hg19::chr18:54339814..54339822,+#_cbb45bab7ed266519c39e5cc23b765ef | p7@WDR7 |
| 1.22e-59 | FFCP PHASE2:Hg19::chr18:54339814..54339822,+#_cbb45bab7ed266519c39e5cc23b765ef | p7@WDR7 |
| 1.82e-59 | FFCP PHASE2:Hg19::chr7:10196589..10196595,-#_70e71fb9a77d0791411bc1aa7bb92f3c | p@chr7:10196589..10196595, - |
| 1.82e-59 | FFCP PHASE1:Hg19::chr7:10196589..10196595,-#_70e71fb9a77d0791411bc1aa7bb92f3c | p@chr7:10196589..10196595, - |
| 2.22e-59 | FFCP PHASE2:Hg19::chr2:62705562..62705579,+#_a82d37ea6e7ecf660d44be9c14a43e39 | p@chr2:62705562..62705579, + |
| 2.22e-59 | FFCP PHASE1:Hg19::chr2:62705562..62705579,+#_a82d37ea6e7ecf660d44be9c14a43e39 | p@chr2:62705562..62705579, + |
| 8.76e-59 | FFCP PHASE2:Hg19::chr4:90856951..90856962,+#_150335af5ef57524b606fe096fae6d9b | p@chr4:90856951..90856962, + |
| 8.76e-59 | FFCP PHASE1:Hg19::chr4:90856951..90856962,+#_150335af5ef57524b606fe096fae6d9b | p@chr4:90856951..90856962, + |
| 8.76e-59 | FFCP PHASE2:Hg19::chr12:71031281..71031292,-#_150335af5ef57524b606fe096fae6d9b | p12@PTPRB |
| 8.76e-59 | FFCP PHASE1:Hg19::chr12:71031281..71031292,-#_150335af5ef57524b606fe096fae6d9b | p12@PTPRB |
| 2.07e-53 | FFCP PHASE2:Hg19::chr12:105882068..105882076,+#_da02fc7cf42ff89a292ad15d0b9419c1 | p@chr12:105882068..105882076, + |
| 2.07e-53 | FFCP PHASE1:Hg19::chr12:105882068..105882076,+#_da02fc7cf42ff89a292ad15d0b9419c1 | p@chr12:105882068..105882076, + |
| 2.7e-53 | FFCP PHASE2:Hg19::chr8:6459787..6459796,+#_bbd95a1f90e00bb408ed4e7b0d839d2f | p@chr8:6459787..6459796, + |
| 2.7e-53 | FFCP PHASE1:Hg19::chr8:6459787..6459796,+#_bbd95a1f90e00bb408ed4e7b0d839d2f | p@chr8:6459787..6459796, + |
| 8.47e-53 | FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_9fa2542fd387e01d310bfbc26000fe52 | p@chr4:38057595..38057624, - |
| 8.47e-53 | FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_9fa2542fd387e01d310bfbc26000fe52 | p@chr4:38057595..38057624, - |
| 5.43e-52 | FFCP PHASE1:Hg19::chr3:194868639..194868654,+#_6ca45daba0b4cde6c6c5bc45a1957e33 | p1@ENST00000426468 |
| 5.43e-52 | FFCP PHASE2:Hg19::chr3:194868639..194868654,+#_6ca45daba0b4cde6c6c5bc45a1957e33 | p1@ENST00000426468 |
| 5.37e-50 | FFCP PHASE2:Hg19::chr8:16425014..16425019,-#_dd6f69b253c28f9d598a31ab03f70440 | p13@MSR1 |
| 5.37e-50 | FFCP PHASE1:Hg19::chr8:16425014..16425019,-#_dd6f69b253c28f9d598a31ab03f70440 | p13@MSR1 |
| 1.05e-49 | FFCP PHASE1:Hg19::chr6:168195978..168195989,+#_6d69dd135a110c8348655d22eabec825 | p3@LOC441179 |
| 1.05e-49 | FFCP PHASE2:Hg19::chr6:168195978..168195989,+#_6d69dd135a110c8348655d22eabec825 | p3@LOC441179 |
| 1.46e-49 | FFCP PHASE1:Hg19::chr2:27487913..27487933,-#_cd7d173396a5eb58a2d6b84109c78a6c | p@chr2:27487913..27487933, - |
| 1.46e-49 | FFCP PHASE2:Hg19::chr2:27487913..27487933,-#_cd7d173396a5eb58a2d6b84109c78a6c | p@chr2:27487913..27487933, - |
| 2.21e-49 | FFCP PHASE2:Hg19::chr8:6420777..6420779,-#_f45fbb29336114aed0f95710d16e5f36 | p5@ANGPT2 |
| 2.21e-49 | FFCP PHASE1:Hg19::chr8:6420777..6420779,-#_f45fbb29336114aed0f95710d16e5f36 | p5@ANGPT2 |
| 9.56e-49 | FFCP PHASE2:Hg19::chr10:94590895..94590905,+#_60be643f122e5b9282f3fa355f3a4b9d | p8@EXOC6 |
| 9.56e-49 | FFCP PHASE1:Hg19::chr10:94590895..94590905,+#_60be643f122e5b9282f3fa355f3a4b9d | p8@EXOC6 |
| 4.56e-48 | FFCP PHASE2:Hg19::chr8:16425043..16425061,-#_32caff43d24cd79b501a9d2646a18a0e | p5@MSR1 |
| 4.56e-48 | FFCP PHASE1:Hg19::chr8:16425043..16425061,-#_32caff43d24cd79b501a9d2646a18a0e | p5@MSR1 |
| 4.82e-46 | FFCP PHASE2:Hg19::chr17:79426425..79426444,+#_30da1b9b4085eef394b755e227fe2ef6 | p@chr17:79426425..79426444, + |
| 4.82e-46 | FFCP PHASE1:Hg19::chr17:79426425..79426444,+#_30da1b9b4085eef394b755e227fe2ef6 | p@chr17:79426425..79426444, + |
| 9.71e-46 | FFCP PHASE2:Hg19::chr11:57543275..57543296,+#_0822a7d76c4e0dd2831a20ed41f33fed | p@chr11:57543275..57543296, + |
| 9.71e-46 | FFCP PHASE1:Hg19::chr11:57543275..57543296,+#_0822a7d76c4e0dd2831a20ed41f33fed | p@chr11:57543275..57543296, + |
| 1.36e-44 | FFCP PHASE1:Hg19::chr19:45226133..45226157,-#_295a947e720cc4b3c304acc2436e3c63 | p@chr19:45226133..45226157, - |
| 1.36e-44 | FFCP PHASE2:Hg19::chr19:45226133..45226157,-#_295a947e720cc4b3c304acc2436e3c63 | p@chr19:45226133..45226157, - |
| 3.19e-44 | FFCP PHASE2:Hg19::chr3:159570877..159570888,+#_524c3825ffe5ae32410add477f8d5798 | p43@SCHIP1 |
| 3.19e-44 | FFCP PHASE1:Hg19::chr3:159570877..159570888,+#_524c3825ffe5ae32410add477f8d5798 | p43@SCHIP1 |
| 6.49e-44 | FFCP PHASE2:Hg19::chr12:71031220..71031229,-#_7d1e82751c0e0611b5daf94c0ac44b71 | p10@PTPRB |
| 6.49e-44 | FFCP PHASE1:Hg19::chr12:71031220..71031229,-#_7d1e82751c0e0611b5daf94c0ac44b71 | p10@PTPRB |
| 8.09e-44 | FFCP PHASE1:Hg19::chr7:79998864..79998896,+#_3b3f0b7a5219585a7c29a83a5c24fb9d | p12@CD36 |
| 8.09e-44 | FFCP PHASE2:Hg19::chr7:79998864..79998896,+#_3b3f0b7a5219585a7c29a83a5c24fb9d | p12@CD36 |
