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Revision as of 16:32, 26 June 2012

Name:basal cell carcinoma
Namespace:disease_ontology
Xrefs:
links:

MSH:D002280
NCI:C2921
SNOMEDCT_2010_1_31:127570002
SNOMEDCT_2010_1_31:1338007
SNOMEDCT_2010_1_31:154507009
SNOMEDCT_2010_1_31:188083002
SNOMEDCT_2010_1_31:189572008
SNOMEDCT_2010_1_31:189573003
SNOMEDCT_2010_1_31:189574009
SNOMEDCT_2010_1_31:252995000
SNOMEDCT_2010_1_31:254701007
SNOMEDCT_2010_1_31:269582000
SNOMEDCT_2010_1_31:275265005
SNOMEDCT_2010_1_31:30649006
SNOMEDCT_2010_1_31:399049001
UMLS_CUI:C0007117
UMLS_CUI:C0206710

UMLS_CUI:C1368295
Synonyms: "Basal cell cancer" EXACT [NCI2004_11_17:C2921]
"basal cell carcinoma" EXACT [CSP2005:2000-2719]
"Basal cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:1338007]
"Basal cell carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189573003]
"BASAL CELL carcinoma OF SKIN" EXACT [MTH:100]
"Basal cell carcinoma of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:254701007]
"basal cell neoplasm" EXACT []
"Basal cell neoplasm (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189572008]
"Basal cell neoplasm NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189574009]
"Basal cell tumor" EXACT [NCI2004_11_17:C3784]
"Basal cell tumor (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:30649006]
"Epithelioma basal cell (disorder)" EXACT [SNOMEDCT_2005_07_31:275265005]
"malignant Basal cell neoplasm" EXACT [NCI2004_11_17:C7586]
"malignant basal cell tumor" EXACT []
"malignant basal cell tumor (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:252995000]
"Rodent ulcer" EXACT [SNOMEDCT_2005_07_31:188083002]
"Rodent ulcer" EXACT [SNOMEDCT_2005_07_31:269582000]
"Rodent ulcer" EXACT [SNOMEDCT_2005_07_31:399049001]
"Rodent ulcer" EXACT [SNOMEDCT_2005_07_31:154507009]
Alt_id: DOID:4275
DOID:4276

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3451(skin carcinoma)



Children


is a:FF:10702-109G9 (basal cell carcinoma cell line:TE 354.T)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:2513 (basal cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:69686723..69686726,-#_648d77bcb2c14c9096d85997fa925302p@chr10:69686723..69686726, -
5.42e-195FFCP PHASE2:Hg19::chr10:69686723..69686726,-#_648d77bcb2c14c9096d85997fa925302p@chr10:69686723..69686726, -
2.55e-98FFCP PHASE1:Hg19::chr18:22080172..22080183,+#_f24a6e710119930ae7553d051ea2f51ap@chr18:22080172..22080183, +
2.55e-98FFCP PHASE2:Hg19::chr18:22080172..22080183,+#_f24a6e710119930ae7553d051ea2f51ap@chr18:22080172..22080183, +
2.39e-66FFCP PHASE1:Hg19::chr3:81671636..81671662,-#_af63cae282677013d52cea3ebd40f789p@chr3:81671636..81671662, -
2.39e-66FFCP PHASE1:Hg19::chr21:37376927..37376938,+#_af63cae282677013d52cea3ebd40f789p@chr21:37376927..37376938, +
2.39e-66FFCP PHASE2:Hg19::chr21:37376927..37376938,+#_af63cae282677013d52cea3ebd40f789p@chr21:37376927..37376938, +
2.39e-66FFCP PHASE2:Hg19::chr3:81671636..81671662,-#_af63cae282677013d52cea3ebd40f789p@chr3:81671636..81671662, -
4.66e-66FFCP PHASE1:Hg19::chr3:177508111..177508119,-#_745650e230fc92ba89ba4d1d33c87307p@chr3:177508111..177508119, -
4.66e-66FFCP PHASE2:Hg19::chr11:101454246..101454255,-#_745650e230fc92ba89ba4d1d33c87307p11@TRPC6
4.66e-66FFCP PHASE2:Hg19::chr3:177508111..177508119,-#_745650e230fc92ba89ba4d1d33c87307p@chr3:177508111..177508119, -
4.66e-66FFCP PHASE1:Hg19::chr11:101454246..101454255,-#_745650e230fc92ba89ba4d1d33c87307p11@TRPC6
1.46e-50FFCP PHASE1:Hg19::chr4:73248974..73249005,+#_ca8e8d9843d67a84fbad727965894db8p@chr4:73248974..73249005, +
1.46e-50FFCP PHASE2:Hg19::chr4:73248974..73249005,+#_ca8e8d9843d67a84fbad727965894db8p@chr4:73248974..73249005, +
2.42e-50FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_bfd6c977107d4a08d7b106c9adde1d5bp@chr16:66906996..66906997, -
2.42e-50FFCP PHASE2:Hg19::chr6:152792772..152792787,-#_bfd6c977107d4a08d7b106c9adde1d5bp@chr6:152792772..152792787, -
2.42e-50FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_bfd6c977107d4a08d7b106c9adde1d5bp@chr16:66906996..66906997, -
2.42e-50FFCP PHASE2:Hg19::chr3:50367252..50367278,-#_bfd6c977107d4a08d7b106c9adde1d5bp@chr3:50367252..50367278, -
2.42e-50FFCP PHASE1:Hg19::chr6:152792772..152792787,-#_bfd6c977107d4a08d7b106c9adde1d5bp@chr6:152792772..152792787, -
2.42e-50FFCP PHASE1:Hg19::chr3:50367252..50367278,-#_bfd6c977107d4a08d7b106c9adde1d5bp@chr3:50367252..50367278, -
6.58e-50FFCP PHASE2:Hg19::chr10:92754303..92754313,+#_5941dec52c59144b28be6d252e64f215p2@ENST00000412362
6.58e-50FFCP PHASE1:Hg19::chr5:14437967..14437970,+#_5941dec52c59144b28be6d252e64f215p@chr5:14437967..14437970, +
6.58e-50FFCP PHASE1:Hg19::chr10:92754303..92754313,+#_5941dec52c59144b28be6d252e64f215p2@ENST00000412362
6.58e-50FFCP PHASE2:Hg19::chr5:14437967..14437970,+#_5941dec52c59144b28be6d252e64f215p@chr5:14437967..14437970, +
6.62e-41FFCP PHASE2:Hg19::chr6:132455433..132455444,+#_84f50f04aa4d1205a310cfdafbd0f387p4@ENST00000443303
6.62e-41FFCP PHASE1:Hg19::chr5:11385573..11385583,-#_84f50f04aa4d1205a310cfdafbd0f387p47@CTNND2
6.62e-41FFCP PHASE1:Hg19::chr4:75180763..75180777,+#_84f50f04aa4d1205a310cfdafbd0f387p@chr4:75180763..75180777, +
6.62e-41FFCP PHASE1:Hg19::chr6:132455433..132455444,+#_84f50f04aa4d1205a310cfdafbd0f387p4@ENST00000443303
6.62e-41FFCP PHASE2:Hg19::chr5:11385573..11385583,-#_84f50f04aa4d1205a310cfdafbd0f387p47@CTNND2
6.62e-41FFCP PHASE2:Hg19::chr4:75180763..75180777,+#_84f50f04aa4d1205a310cfdafbd0f387p@chr4:75180763..75180777, +
1.48e-40FFCP PHASE1:Hg19::chr10:32111231..32111276,-#_017fd167d8cf233465ef6764559eba36p@chr10:32111231..32111276, -
1.48e-40FFCP PHASE1:Hg19::chr15:34522001..34522013,+#_017fd167d8cf233465ef6764559eba36p@chr15:34522001..34522013, +
1.48e-40FFCP PHASE2:Hg19::chr10:32111231..32111276,-#_017fd167d8cf233465ef6764559eba36p@chr10:32111231..32111276, -
1.48e-40FFCP PHASE2:Hg19::chr15:34522001..34522013,+#_017fd167d8cf233465ef6764559eba36p@chr15:34522001..34522013, +
2.21e-40FFCP PHASE1:Hg19::chr4:188508175..188508193,-#_7141ac7c37b1217d8501b8ef9b90e966p@chr4:188508175..188508193, -
2.21e-40FFCP PHASE1:Hg19::chr1:198125486..198125496,+#_7141ac7c37b1217d8501b8ef9b90e966p@chr1:198125486..198125496, +
2.21e-40FFCP PHASE2:Hg19::chr2:170664937..170664947,+#_7141ac7c37b1217d8501b8ef9b90e966p13@SSB
2.21e-40FFCP PHASE2:Hg19::chr4:188508175..188508193,-#_7141ac7c37b1217d8501b8ef9b90e966p@chr4:188508175..188508193, -
2.21e-40FFCP PHASE2:Hg19::chr1:198125486..198125496,+#_7141ac7c37b1217d8501b8ef9b90e966p@chr1:198125486..198125496, +
2.21e-40FFCP PHASE1:Hg19::chr2:170664937..170664947,+#_7141ac7c37b1217d8501b8ef9b90e966p13@SSB
1.84e-34FFCP PHASE1:Hg19::chr10:92754444..92754453,+#_24b23d2d0181a616235f6b53c6a8266cp3@ENST00000412362
1.84e-34FFCP PHASE2:Hg19::chr10:92754444..92754453,+#_24b23d2d0181a616235f6b53c6a8266cp3@ENST00000412362
2.58e-34FFCP PHASE1:Hg19::chr11:132814140..132814166,-#_2ecbc77460a89b00cf295530cf4c1cacp15@OPCML
2.58e-34FFCP PHASE2:Hg19::chr11:132814140..132814166,-#_2ecbc77460a89b00cf295530cf4c1cacp15@OPCML
2.58e-34FFCP PHASE1:Hg19::chr4:138585909..138585915,+#_2ecbc77460a89b00cf295530cf4c1cacp@chr4:138585909..138585915, +
2.58e-34FFCP PHASE2:Hg19::chr4:138585909..138585915,+#_2ecbc77460a89b00cf295530cf4c1cacp@chr4:138585909..138585915, +
3.61e-34FFCP PHASE1:Hg19::chr3:177508140..177508151,-#_c3ae2e3e46c544ec4b3d6c49a401150cp@chr3:177508140..177508151, -
3.61e-34FFCP PHASE2:Hg19::chr3:177508140..177508151,-#_c3ae2e3e46c544ec4b3d6c49a401150cp@chr3:177508140..177508151, -
5.05e-34FFCP PHASE2:Hg19::chr2:228246460..228246471,-#_0c7a12afb2d46ebc69f752788a1d802ap4@TM4SF20
5.05e-34FFCP PHASE1:Hg19::chr2:228246460..228246471,-#_0c7a12afb2d46ebc69f752788a1d802ap4@TM4SF20
9.99e-30FFCP PHASE1:Hg19::chr10:119302113..119302122,-#_077ae81bbd3ec57f3390f8ce668bd291p13@EMX2OS
9.99e-30FFCP PHASE2:Hg19::chr10:119302113..119302122,-#_077ae81bbd3ec57f3390f8ce668bd291p13@EMX2OS
1.33e-29FFCP PHASE1:Hg19::chr7:41728506..41728517,-#_e9349ab790ac68b2e74aa5aca8ede97bp@chr7:41728506..41728517, -
1.33e-29FFCP PHASE1:Hg19::chr11:132814188..132814199,-#_e9349ab790ac68b2e74aa5aca8ede97bp@chr11:132814188..132814199, -
1.33e-29FFCP PHASE2:Hg19::chr11:132814188..132814199,-#_e9349ab790ac68b2e74aa5aca8ede97bp@chr11:132814188..132814199, -
1.33e-29FFCP PHASE2:Hg19::chr7:41728506..41728517,-#_e9349ab790ac68b2e74aa5aca8ede97bp@chr7:41728506..41728517, -
1.78e-29FFCP PHASE2:Hg19::chr7:121090011..121090047,+#_65613c51888fb9a804550c5a62c5b716p@chr7:121090011..121090047, +
1.78e-29FFCP PHASE1:Hg19::chr17:20824335..20824346,+#_65613c51888fb9a804550c5a62c5b716p3@ENST00000443508
1.78e-29FFCP PHASE1:Hg19::chr7:121090011..121090047,+#_65613c51888fb9a804550c5a62c5b716p@chr7:121090011..121090047, +
1.78e-29FFCP PHASE2:Hg19::chr17:20824335..20824346,+#_65613c51888fb9a804550c5a62c5b716p3@ENST00000443508
3.16e-29FFCP PHASE1:Hg19::chr10:92754351..92754372,+#_7b9a5c9a1c1309d1bf00fceb77053591p1@ENST00000412362
3.16e-29FFCP PHASE2:Hg19::chr10:92754351..92754372,+#_7b9a5c9a1c1309d1bf00fceb77053591p1@ENST00000412362
4.2e-29FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_3ec9d1597b9d191ae75328ac643ff096p10@ITGA8
4.2e-29FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_3ec9d1597b9d191ae75328ac643ff096p10@ITGA8
2.78e-26FFCP PHASE1:Hg19::chr18:11174068..11174093,+#_bba9229bfb8e83c5096edd73e8c769a3p@chr18:11174068..11174093, +
2.78e-26FFCP PHASE2:Hg19::chr18:11174068..11174093,+#_bba9229bfb8e83c5096edd73e8c769a3p@chr18:11174068..11174093, +
3.58e-26FFCP PHASE2:Hg19::chr5:142000713..142000743,-#_6c45dd69ab7d5541ce41919de87e6addp@chr5:142000713..142000743, -
3.58e-26FFCP PHASE1:Hg19::chr5:142000713..142000743,-#_6c45dd69ab7d5541ce41919de87e6addp@chr5:142000713..142000743, -
5.93e-26FFCP PHASE2:Hg19::chr7:141730415..141730422,+#_b7529d3bcc518fd10e60dd8a2d4b4732p@chr7:141730415..141730422, +
5.93e-26FFCP PHASE2:Hg19::chr2:72742814..72742824,-#_b7529d3bcc518fd10e60dd8a2d4b4732p10@EXOC6B
5.93e-26FFCP PHASE1:Hg19::chr7:141730415..141730422,+#_b7529d3bcc518fd10e60dd8a2d4b4732p@chr7:141730415..141730422, +
5.93e-26FFCP PHASE1:Hg19::chr2:72742814..72742824,-#_b7529d3bcc518fd10e60dd8a2d4b4732p10@EXOC6B
9.79e-26FFCP PHASE2:Hg19::chr2:72800462..72800468,-#_8ded922631f997d97b0620e94694f42cp@chr2:72800462..72800468, -
9.79e-26FFCP PHASE1:Hg19::chr2:72800462..72800468,-#_8ded922631f997d97b0620e94694f42cp@chr2:72800462..72800468, -
1.26e-25FFCP PHASE2:Hg19::chr1:172972632..172972638,+#_5e7915d993509f00c7bb1e07efbdcc09p@chr1:172972632..172972638, +
1.26e-25FFCP PHASE1:Hg19::chr1:172972632..172972638,+#_5e7915d993509f00c7bb1e07efbdcc09p@chr1:172972632..172972638, +
1.34e-23FFCP PHASE1:Hg19::chr6:72313706..72313717,+#_ebbf1731ca50c8694f92a2f8886b1095p2@BC038189
1.34e-23FFCP PHASE2:Hg19::chr6:72313706..72313717,+#_ebbf1731ca50c8694f92a2f8886b1095p2@BC038189
1.67e-23FFCP PHASE1:Hg19::chr16:17198879..17198884,-#_f02f6f3868db9bc740e7dd6e731f86cdp@chr16:17198879..17198884, -
1.67e-23FFCP PHASE1:Hg19::chr8:122625230..122625248,-#_f02f6f3868db9bc740e7dd6e731f86cdp@chr8:122625230..122625248, -
1.67e-23FFCP PHASE2:Hg19::chr16:17198879..17198884,-#_f02f6f3868db9bc740e7dd6e731f86cdp@chr16:17198879..17198884, -
1.67e-23FFCP PHASE2:Hg19::chr8:122625230..122625248,-#_f02f6f3868db9bc740e7dd6e731f86cdp@chr8:122625230..122625248, -
2.62e-23FFCP PHASE1:Hg19::chrX:69308514..69308559,+#_7ee4711e4cfcdca1b308591896e18f25p@chrX:69308514..69308559, +
2.62e-23FFCP PHASE1:Hg19::chr17:62658220..62658231,-#_7ee4711e4cfcdca1b308591896e18f25p6@SMURF2
2.62e-23FFCP PHASE1:Hg19::chr22:32352399..32352412,+#_7ee4711e4cfcdca1b308591896e18f25p28@YWHAH
2.62e-23FFCP PHASE2:Hg19::chrX:69308514..69308559,+#_7ee4711e4cfcdca1b308591896e18f25p@chrX:69308514..69308559, +
2.62e-23FFCP PHASE2:Hg19::chr17:62658220..62658231,-#_7ee4711e4cfcdca1b308591896e18f25p6@SMURF2
2.62e-23FFCP PHASE2:Hg19::chr22:32352399..32352412,+#_7ee4711e4cfcdca1b308591896e18f25p28@YWHAH
3.28e-23FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_4dae0b90e711a5524a00edcbf71d1facp4@ENST00000443508
3.28e-23FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_4dae0b90e711a5524a00edcbf71d1facp4@ENST00000443508
4.1e-23FFCP PHASE1:Hg19::chr9:94245773..94245784,-#_ca598177c9ee6821875e9f5bc74892d7p@chr9:94245773..94245784, -
4.1e-23FFCP PHASE1:Hg19::chr11:7991573..7991621,+#_ca598177c9ee6821875e9f5bc74892d7p4@EIF3F
4.1e-23FFCP PHASE2:Hg19::chr9:94245773..94245784,-#_ca598177c9ee6821875e9f5bc74892d7p@chr9:94245773..94245784, -
4.1e-23FFCP PHASE2:Hg19::chr11:7991573..7991621,+#_ca598177c9ee6821875e9f5bc74892d7p4@EIF3F
1.88e-21FFCP PHASE1:Hg19::chr11:86106336..86106348,+#_8b5ac92e1028c90cfbbcfe557e6d520cp7@CCDC81
1.88e-21FFCP PHASE1:Hg19::chr1:86049332..86049343,+#_8b5ac92e1028c90cfbbcfe557e6d520cp@chr1:86049332..86049343, +
1.88e-21FFCP PHASE2:Hg19::chr11:86106336..86106348,+#_8b5ac92e1028c90cfbbcfe557e6d520cp7@CCDC81
1.88e-21FFCP PHASE2:Hg19::chr1:86049332..86049343,+#_8b5ac92e1028c90cfbbcfe557e6d520cp@chr1:86049332..86049343, +
2.82e-21FFCP PHASE2:Hg19::chr8:122653259..122653278,+#_eecba91b3471a2db9ab68b7a2e84f9a1p4@HAS2-AS1
2.82e-21FFCP PHASE1:Hg19::chr5:14145687..14145698,+#_eecba91b3471a2db9ab68b7a2e84f9a1p@chr5:14145687..14145698, +

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