UBERON:0000014: Difference between revisions
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|def="A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin] | |def="A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin] | ||
|xref= | |xref=EHDAA2:0001844;;EHDAA:6530;;EV:0100152;;FMA:86166;;GAID:933;;http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png;;MA:0000151;;MAT:0000284;;MESH:A.17.815;;MIAA:0000284;;OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA;;SCTID:20795001;;VHOG:0000860 | ||
|is_a=UBERON:0000064 | |is_a=UBERON:0000064 | ||
|synonym="portion of skin" EXACT [];;"region of skin" EXACT [];;"skin" EXACT [MA:0000151];;"skin region" EXACT [];;"skin zone" EXACT [] | |synonym="portion of skin" EXACT [];;"region of skin" EXACT [];;"skin" EXACT [MA:0000151];;"skin region" EXACT [];;"skin zone" EXACT [] | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} |
Revision as of 16:55, 26 June 2012
Name: | zone of skin | |
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Definition: | "A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin] | |
Xrefs: |
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Synonyms: |
"portion of skin" EXACT [] "region of skin" EXACT [] "skin" EXACT [MA:0000151] "skin region" EXACT [] "skin zone" EXACT [] | |
Comments: | we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000064(organ part) |
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Children
is a: | UBERON:0001419 (skin of limb),FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso),FF:0103765 (dermatofibroma cell line),FF:10702-109G9 (basal cell carcinoma cell line:TE 354.T),FF:10713-109I2 (),FF:10791-110H8 (keratoacanthoma cell line:HKA-1) |
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derives from: | FF:0010065 (human skin - fetal sample),FF:0010074 (human skin - adult sample),FF:0011308 (mouse skin- adult sample),FF:0011397 (mouse skin- neonate N00 sample),FF:0011400 (mouse skin- neonate N03 sample),FF:0011406 (mouse skin- neonate N06 sample),FF:0011421 (mouse skin- neonate N10 sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10283-104F4
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10311-104I5
- 10313-104I7
- 10314-104I8
- 10315-104I9
... further results Mouse (Mus musculus)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10283-104F4
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10311-104I5
- 10313-104I7
- 10314-104I8
- 10315-104I9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000014 (zone of skin), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data