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|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim;;vertebrate_core
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003918
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001285
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
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}}
}}

Revision as of 16:58, 26 June 2012

Name:nephron tubule
Definition:"An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule]
Xrefs:
links:

BTO:0000343
EFO:0003666
EMAPA:27782
EV:0100387
FMA:15627
GAID:433
MA:0000377
MESH:A.05.810.453.736.560
ncithesaurus:Renal_Tubule
SCTID:361332007
TAO:0001287

ZFA:0001287
Synonyms: "kidney tubule" EXACT [GAID:433]
"renal tubule" BROAD []
"tubulus renalis" EXACT []
"uriniferous tubule" RELATED [MA:0000377]
Comments:note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA
Alt_id: UBERON:0004210
UBERON:FMA_15627-ZFA_0001287
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004211(nephron epithelium),UBERON:0009773(renal tubule)



Children

is a:UBERON:0004198 (comma-shaped body),UBERON:0007685 (region of nephron tubule)
part of:UBERON:0004134 (proximal tubule),UBERON:0004810 (nephron tubule epithelium),UBERON:0007685 (region of nephron tubule),CL:1000494 (nephron tubule epithelial cell),CL:1000507 (kidney tubule cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001231 (nephron tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.05e-87FFCP PHASE2:Hg19::chr2:693380..693398,+#_c4110c4d35eac421f8a296a8d25ace6ap@chr2:693380..693398, +
1.05e-87FFCP PHASE1:Hg19::chr2:693380..693398,+#_c4110c4d35eac421f8a296a8d25ace6ap@chr2:693380..693398, +
1.72e-83FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_3c86aba35d219e51c32550da53ac45bdp4@MEGF11
1.72e-83FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_3c86aba35d219e51c32550da53ac45bdp4@MEGF11
2.2e-74FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_d1464d3f93d8365a9a6fd55c80f93a7fp7@HOXA10
2.2e-74FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_d1464d3f93d8365a9a6fd55c80f93a7fp7@HOXA10
7.63e-66FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_be8fb99b4601f63af5917c3e83a2b56ep@chr1:1100457..1100470, +
7.63e-66FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_be8fb99b4601f63af5917c3e83a2b56ep@chr1:1100457..1100470, +
6.44e-62FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_ae612df91c2319781b93d2919af37bebp4@PAX2
6.44e-62FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_ae612df91c2319781b93d2919af37bebp4@PAX2
5.84e-60FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_052f7db58c0423c68bebf4ca1ca7d016p@chr18:3456189..3456200, +
5.84e-60FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_052f7db58c0423c68bebf4ca1ca7d016p@chr18:3456189..3456200, +
6.18e-60FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_0dd116d50084994b32c1f6bb417f50c6p3@PAX2
6.18e-60FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_0dd116d50084994b32c1f6bb417f50c6p3@PAX2
4.45e-59FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_4413121c3f27783168bca7cd5260d21dp6@LRRN4
4.45e-59FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_4413121c3f27783168bca7cd5260d21dp6@LRRN4
3.49e-58FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_34ec834abd12d9a7885b04ae55d05ef5p@chr5:74244100..74244117, +
3.49e-58FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_34ec834abd12d9a7885b04ae55d05ef5p@chr5:74244100..74244117, +
3.91e-56FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_1daae175225e44038eadd08b2d4dcce6p2@AB527789
3.91e-56FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_1daae175225e44038eadd08b2d4dcce6p2@AB527789
3.83e-55FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_da1cb35cad4d58e583f6c17197c965abp@chr16:86604624..86604648, +
3.83e-55FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_da1cb35cad4d58e583f6c17197c965abp@chr16:86604624..86604648, +
3.51e-54FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_c4def0bcb583974432c20b1ebd418541p@chr16:86768403..86768437, +
3.51e-54FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_c4def0bcb583974432c20b1ebd418541p@chr16:86768403..86768437, +
6.09e-53FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_79879646fb8b152de1a3961b339eafacp2@CLDN6
6.09e-53FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_79879646fb8b152de1a3961b339eafacp2@CLDN6
2.79e-52FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_5bff23bb502b65683cccb8c8bd4b2316p1@ENST00000418041, p1@ENST00000443104
2.79e-52FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_5bff23bb502b65683cccb8c8bd4b2316p1@ENST00000418041, p1@ENST00000443104
1.61e-50FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_8abe077f61c79f788a3112d9a06d49b5p@chr7:7606139..7606151, -
1.61e-50FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_8abe077f61c79f788a3112d9a06d49b5p@chr7:7606139..7606151, -
1.96e-50FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_2a39dd5cb73d81caeed4d14ed4bdbab5p3@HNF1B
1.96e-50FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_2a39dd5cb73d81caeed4d14ed4bdbab5p3@HNF1B
1.73e-49FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_988e97ac4d8a1773386e8b732551258dp@chr7:140227349..140227360, -
1.73e-49FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_988e97ac4d8a1773386e8b732551258dp@chr7:140227349..140227360, -
2.61e-49FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_cd1398d43eb3c3e6d9804bb6ed50683dp16@HOXA10
2.61e-49FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_cd1398d43eb3c3e6d9804bb6ed50683dp16@HOXA10
3.13e-49FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_335a0bc4ca23eb2da77f3abf0b4a9c84p2@B3GALT5
3.13e-49FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_335a0bc4ca23eb2da77f3abf0b4a9c84p2@B3GALT5
4.07e-49FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_a70caf0a53bd2287e503fedc443261f0p4@AIF1L
4.07e-49FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_a70caf0a53bd2287e503fedc443261f0p4@AIF1L
1.12e-47FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_e5b929c1adabf0f9a58aabc7fb48fa83p@chr7:140227303..140227330, -
1.12e-47FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_e5b929c1adabf0f9a58aabc7fb48fa83p@chr7:140227303..140227330, -
1.23e-44FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_6092df2d57dc90a6f6af5a785cb87938p3@LRRN4
1.23e-44FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_6092df2d57dc90a6f6af5a785cb87938p3@LRRN4
3.62e-44FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_048d41eff041e1bf5acbe52f8aa38b60p@chr21:46826248..46826282, -
3.62e-44FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_048d41eff041e1bf5acbe52f8aa38b60p@chr21:46826248..46826282, -
3.06e-43FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_1d5eb1f13a12903f0e3728d6187104f9p2@LRRN4
3.06e-43FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_1d5eb1f13a12903f0e3728d6187104f9p2@LRRN4
1.81e-42FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_13f507da756636947df326c7b969768ap@chr15:85403302..85403304, +
1.81e-42FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_13f507da756636947df326c7b969768ap@chr15:85403302..85403304, +
1.82e-42FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_d081416e4f9f76eda895aa1ade1d97c2p@chr7:98453821..98453843, -
1.82e-42FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_d081416e4f9f76eda895aa1ade1d97c2p@chr7:98453821..98453843, -
2.77e-42FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_302d98130cfe0afacee19afd3fc3e13ep7@LRRN4
2.77e-42FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_302d98130cfe0afacee19afd3fc3e13ep7@LRRN4
7.5e-42FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_444c719523c17888c2880dba44af08bap2@PAX2
7.5e-42FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_444c719523c17888c2880dba44af08bap2@PAX2
3.59e-41FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_42aac8cbb6f52bf3bb3a0ee40755fd50p16@TJP2
3.59e-41FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_42aac8cbb6f52bf3bb3a0ee40755fd50p16@TJP2
9.39e-41FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_40f6def42390e802a4fe636f8e5213f5p1@ENST00000413103
9.39e-41FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_40f6def42390e802a4fe636f8e5213f5p1@ENST00000413103
1.7e-40FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_fc36ee9b2e47d59ddbf5aa80b1bc2efap5@LRRN4
1.7e-40FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_fc36ee9b2e47d59ddbf5aa80b1bc2efap5@LRRN4
2.9e-40FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_5c16691074a9e660ac5ef398f739bdfbp2@PLA2G2F
2.9e-40FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_5c16691074a9e660ac5ef398f739bdfbp2@PLA2G2F
8.58e-40FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_a21ca6063064df595e57c6c7a8cbf83ep3@AIF1L
8.58e-40FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_a21ca6063064df595e57c6c7a8cbf83ep3@AIF1L
1.21e-39FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_84faacf39c0fc3f2fd8340d409861640p6@GALNT14
1.21e-39FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_84faacf39c0fc3f2fd8340d409861640p6@GALNT14
3.08e-39FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_cacf2af2737c62a7965c63fa976f97dep4@AB527789
3.08e-39FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_cacf2af2737c62a7965c63fa976f97dep4@AB527789
7.42e-37FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_e8fc537ab14b783976f0c3cdcd5f2042p4@DCDC2
7.42e-37FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_e8fc537ab14b783976f0c3cdcd5f2042p4@DCDC2
1.29e-36FFCP PHASE2:Hg19::chr2:693362..693373,+#_f5ad39f41c215bbca6cb57f1af0b58c4p@chr2:693362..693373, +
1.29e-36FFCP PHASE1:Hg19::chr2:693362..693373,+#_f5ad39f41c215bbca6cb57f1af0b58c4p@chr2:693362..693373, +
1.36e-36FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_ed8abd2002136d091354aad3f6e20ed6p1@HOXD4
1.36e-36FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_ed8abd2002136d091354aad3f6e20ed6p1@HOXD4
6.21e-36FFCP PHASE1:Hg19::chr2:176982078..176982095,+#_0ff727f150dd082d197b6c70ca474c82p@chr2:176982078..176982095, +
6.21e-36FFCP PHASE2:Hg19::chr2:176982078..176982095,+#_0ff727f150dd082d197b6c70ca474c82p@chr2:176982078..176982095, +
2.64e-35FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_769ee45ecf95399e126d8e4cf6024e81p1@AB527789
2.64e-35FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_769ee45ecf95399e126d8e4cf6024e81p1@AB527789
3.85e-35FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_cad114a1bcec149637e65282c9d49b9ep3@SULT1C4
3.85e-35FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_cad114a1bcec149637e65282c9d49b9ep3@SULT1C4
8.14e-35FFCP PHASE1:Hg19::chr18:43405633..43405645,+#_25849f4b4ea23371abed9d20d1bdbf31p4@SIGLEC15
8.14e-35FFCP PHASE2:Hg19::chr18:43405633..43405645,+#_25849f4b4ea23371abed9d20d1bdbf31p4@SIGLEC15
1.65e-34FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_56e33be3e180fbe34508b6954f74df6cp1@ENST00000444849
1.65e-34FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_56e33be3e180fbe34508b6954f74df6cp1@ENST00000444849
1.14e-33FFCP PHASE1:Hg19::chr17:171147..171161,+#_1667ac35cb868f157d3a50a60e43e293p@chr17:171147..171161, +
1.14e-33FFCP PHASE2:Hg19::chr17:171147..171161,+#_1667ac35cb868f157d3a50a60e43e293p@chr17:171147..171161, +
1.52e-33FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_cdc3215dcac2cad7bf3204d21a58510fp2@C14orf105
1.52e-33FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_cdc3215dcac2cad7bf3204d21a58510fp2@C14orf105
1.8e-33FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_2d56403e9121d2631c885d997922570fp5@GALNT14
1.8e-33FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_2d56403e9121d2631c885d997922570fp5@GALNT14
2.35e-33FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_8ea0f6f4a91cf2d85e9c1b5d2446e06cp1@CLDN16
2.35e-33FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_8ea0f6f4a91cf2d85e9c1b5d2446e06cp1@CLDN16
4.12e-33FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_c21618c2f5854d01a50dfb3c62cade5ep@chr17:36065029..36065045, -
4.12e-33FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_c21618c2f5854d01a50dfb3c62cade5ep@chr17:36065029..36065045, -
8.12e-33FFCP PHASE2:Hg19::chr17:35293950..35293973,-#_58858de91242ab5bbe1293e78f46ff6fp1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
8.12e-33FFCP PHASE1:Hg19::chr17:35293950..35293973,-#_58858de91242ab5bbe1293e78f46ff6fp1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
1.25e-32FFCP PHASE1:Hg19::chr22:30653574..30653606,-#_8ffd1da7156bb40c9bb981f7d4ca69cfp@chr22:30653574..30653606, -
1.25e-32FFCP PHASE2:Hg19::chr22:30653574..30653606,-#_8ffd1da7156bb40c9bb981f7d4ca69cfp@chr22:30653574..30653606, -

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