UBERON:0002072: Difference between revisions
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells. Le Guellec et al, 2004.[TAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:00, 26 June 2012
| Name: | hypodermis | ||
|---|---|---|---|
| Definition: | "Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells[FMA]." [Wikipedia:Hypodermis, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"hypoderm" EXACT [] "subcutaneous tissue" RELATED [Wikipedia:Hypodermis] "subcutis" RELATED [] "superficial fascia" EXACT [FMA:9630] "tela subcutanea" EXACT [FMA:9630, FMA:TA] "vertebrate hypodermis" EXACT [] | ||
| Comments: | Note that this class combines superficial fascia and hypodermis in FMA. Note also BTO has 'subcutis' | ||
| Alt_id: | UBERON:FMA_70544-MIAA_0000418-ZFA_0000117-ZFA_0001136 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Skin.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002384(connective tissue),UBERON:0004120(mesoderm-derived structure) |
|---|
Children
| part of: | UBERON:0002190 (subcutaneous adipose tissue),CL:0002583 (subcutaneous preadipocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11259-116F8 (Adipocyte - subcutaneous, donor1)
- 11279-116I1 (Preadipocyte - subcutaneous, donor1)
- 11336-117F4 (Adipocyte - subcutaneous, donor2)
- 11356-117H6 (Preadipocyte - subcutaneous, donor2)
- 11408-118E4 (Adipocyte - subcutaneous, donor3)
- 11428-118G6 (Preadipocyte - subcutaneous, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002072 (hypodermis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.65e-59 | FFCP PHASE1:Hg19::chr17:17495407..17495419,-#_3482fd1f80f4be15f00c068e52198d69 | p17@PEMT |
| 1.65e-59 | FFCP PHASE2:Hg19::chr17:17495407..17495419,-#_3482fd1f80f4be15f00c068e52198d69 | p17@PEMT |
| 2.73e-51 | FFCP PHASE2:Hg19::chr11:111895969..111895977,+#_b5bca8fa9804903ee66f328357721858 | p8@DLAT |
| 2.73e-51 | FFCP PHASE1:Hg19::chr11:111895969..111895977,+#_b5bca8fa9804903ee66f328357721858 | p8@DLAT |
| 3.24e-51 | FFCP PHASE1:Hg19::chr3:12190006..12190011,+#_e1ad457e1c2540c0d49c8f77c4c08a9b | p19@SYN2 |
| 3.24e-51 | FFCP PHASE2:Hg19::chr3:12190006..12190011,+#_e1ad457e1c2540c0d49c8f77c4c08a9b | p19@SYN2 |
| 3.47e-45 | FFCP PHASE2:Hg19::chr11:823806..823819,+#_c1704ca19a80a59a25b03e4ef764e991 | p19@PNPLA2 |
| 3.47e-45 | FFCP PHASE1:Hg19::chr11:823806..823819,+#_c1704ca19a80a59a25b03e4ef764e991 | p19@PNPLA2 |
| 8.55e-45 | FFCP PHASE2:Hg19::chr11:35232781..35232791,+#_3f95c05a4941784c7b1bb78882b244bd | p1@U94903 |
| 8.55e-45 | FFCP PHASE1:Hg19::chr11:35232781..35232791,+#_3f95c05a4941784c7b1bb78882b244bd | p1@U94903 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr12:94286185..94286186,+#_3561c89d6970736877bdf353b6c12c81 | p@chr12:94286185..94286186, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr12:94286185..94286186,+#_3561c89d6970736877bdf353b6c12c81 | p@chr12:94286185..94286186, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr14:66872597..66872598,+#_3561c89d6970736877bdf353b6c12c81 | p@chr14:66872597..66872598, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr14:66872597..66872598,+#_3561c89d6970736877bdf353b6c12c81 | p@chr14:66872597..66872598, + |
| 2.22e-40 | FFCP PHASE2:Hg19::chr12:109593033..109593052,+#_cde5c832ae3e73e236e67a2d275b5014 | p@chr12:109593033..109593052, + |
| 2.22e-40 | FFCP PHASE1:Hg19::chr12:109593033..109593052,+#_cde5c832ae3e73e236e67a2d275b5014 | p@chr12:109593033..109593052, + |
| 2.55e-40 | FFCP PHASE2:Hg19::chr12:50503990..50504003,+#_4dd1f169e97385c6eb7c66d8b5b4290d | p@chr12:50503990..50504003, + |
| 2.55e-40 | FFCP PHASE1:Hg19::chr12:50503990..50504003,+#_4dd1f169e97385c6eb7c66d8b5b4290d | p@chr12:50503990..50504003, + |
| 3.31e-40 | FFCP PHASE1:Hg19::chr3:52269260..52269269,-#_6e57ddfd9cfe4b2411e7c1d6b31502c5 | p@chr3:52269260..52269269, - |
| 3.31e-40 | FFCP PHASE2:Hg19::chr2:65356996..65357005,+#_6e57ddfd9cfe4b2411e7c1d6b31502c5 | p@chr2:65356996..65357005, + |
| 3.31e-40 | FFCP PHASE2:Hg19::chr3:52269260..52269269,-#_6e57ddfd9cfe4b2411e7c1d6b31502c5 | p@chr3:52269260..52269269, - |
| 3.31e-40 | FFCP PHASE1:Hg19::chr2:65356996..65357005,+#_6e57ddfd9cfe4b2411e7c1d6b31502c5 | p@chr2:65356996..65357005, + |
| 4.05e-40 | FFCP PHASE1:Hg19::chr12:16758109..16758118,-#_0c7d773d7f8edd4d7d59bae69735d596 | p37@LMO3 |
| 4.05e-40 | FFCP PHASE2:Hg19::chr12:16758109..16758118,-#_0c7d773d7f8edd4d7d59bae69735d596 | p37@LMO3 |
| 1.57e-36 | FFCP PHASE2:Hg19::chr17:80382262..80382282,+#_00997d7c389106aea03c93158e43997a | p@chr17:80382262..80382282, + |
| 1.57e-36 | FFCP PHASE1:Hg19::chr17:80382262..80382282,+#_00997d7c389106aea03c93158e43997a | p@chr17:80382262..80382282, + |
| 6.67e-36 | FFCP PHASE2:Hg19::chr1:115822948..115822957,+#_7c2b4e41248578e5cb2badeb08a14dc0 | p@chr1:115822948..115822957, + |
| 6.67e-36 | FFCP PHASE1:Hg19::chr1:115822948..115822957,+#_7c2b4e41248578e5cb2badeb08a14dc0 | p@chr1:115822948..115822957, + |
| 2.49e-33 | FFCP PHASE1:Hg19::chr3:13610185..13610194,+#_549342eb9ba748a786378fe5e4c1b1da | p9@FBLN2 |
| 2.49e-33 | FFCP PHASE2:Hg19::chr3:13610185..13610194,+#_549342eb9ba748a786378fe5e4c1b1da | p9@FBLN2 |
| 6.67e-33 | FFCP PHASE1:Hg19::chr9:653255..653267,+#_b9f40dab6de1e8815d7a79f26f707bf8 | p@chr9:653255..653267, + |
| 6.67e-33 | FFCP PHASE2:Hg19::chr9:653255..653267,+#_b9f40dab6de1e8815d7a79f26f707bf8 | p@chr9:653255..653267, + |
| 1.23e-32 | FFCP PHASE2:Hg19::chr5:180258514..180258515,-#_f61b0176585857130581f9cafc667da4 | p15@uc003mmj.1 |
| 1.23e-32 | FFCP PHASE1:Hg19::chr5:180258514..180258515,-#_f61b0176585857130581f9cafc667da4 | p15@uc003mmj.1 |
| 1.44e-32 | FFCP PHASE1:Hg19::chr11:111896693..111896701,+#_5094fa46c385b1d90bc5782ef81e7bbc | p@chr11:111896693..111896701, + |
| 1.44e-32 | FFCP PHASE2:Hg19::chr11:111896693..111896701,+#_5094fa46c385b1d90bc5782ef81e7bbc | p@chr11:111896693..111896701, + |
| 1.05e-30 | FFCP PHASE2:Hg19::chr3:52821997..52822012,+#_20c55b3d1ac6647b01661e06b4a6b739 | p3@ITIH1 |
| 1.05e-30 | FFCP PHASE1:Hg19::chr3:52821997..52822012,+#_20c55b3d1ac6647b01661e06b4a6b739 | p3@ITIH1 |
| 1.73e-30 | FFCP PHASE1:Hg19::chr3:12190041..12190062,+#_f45386412fcf6a0e7a95c37de619d104 | p6@SYN2 |
| 1.73e-30 | FFCP PHASE2:Hg19::chr3:12190041..12190062,+#_f45386412fcf6a0e7a95c37de619d104 | p6@SYN2 |
| 1.91e-28 | FFCP PHASE2:Hg19::chr11:63273651..63273660,+#_70ae755b26d0a7f7becfc218d3a414a2 | p7@LGALS12 |
| 1.91e-28 | FFCP PHASE1:Hg19::chr11:63273651..63273660,+#_70ae755b26d0a7f7becfc218d3a414a2 | p7@LGALS12 |
| 2.77e-28 | FFCP PHASE1:Hg19::chr16:68325453..68325473,+#_b496c20a0fe7f58369b75008d6c86f2b | p@chr16:68325453..68325473, + |
| 2.77e-28 | FFCP PHASE2:Hg19::chr16:68325453..68325473,+#_b496c20a0fe7f58369b75008d6c86f2b | p@chr16:68325453..68325473, + |
| 1.59e-27 | FFCP PHASE1:Hg19::chr17:41004526..41004533,-#_90039d72e6a2f90b2752375365440099 | p@chr17:41004526..41004533, - |
| 1.59e-27 | FFCP PHASE2:Hg19::chr17:41004526..41004533,-#_90039d72e6a2f90b2752375365440099 | p@chr17:41004526..41004533, - |
| 1.82e-27 | FFCP PHASE2:Hg19::chr3:52821979..52821984,+#_2651feab082b9c5b2e7c00584e13de7f | p14@ITIH1 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr3:52821979..52821984,+#_2651feab082b9c5b2e7c00584e13de7f | p14@ITIH1 |
| 2.08e-27 | FFCP PHASE2:Hg19::chr11:63273968..63273973,+#_d5c40c9b3471a83b1bec87c817902fe3 | p12@LGALS12 |
| 2.08e-27 | FFCP PHASE1:Hg19::chr10:113915737..113915754,-#_d5c40c9b3471a83b1bec87c817902fe3 | p@chr10:113915737..113915754, - |
| 2.08e-27 | FFCP PHASE1:Hg19::chr11:63273968..63273973,+#_d5c40c9b3471a83b1bec87c817902fe3 | p12@LGALS12 |
| 2.08e-27 | FFCP PHASE2:Hg19::chr11:111896671..111896691,+#_d5c40c9b3471a83b1bec87c817902fe3 | p@chr11:111896671..111896691, + |
| 2.08e-27 | FFCP PHASE1:Hg19::chr11:111896671..111896691,+#_d5c40c9b3471a83b1bec87c817902fe3 | p@chr11:111896671..111896691, + |
| 2.08e-27 | FFCP PHASE2:Hg19::chr10:113915737..113915754,-#_d5c40c9b3471a83b1bec87c817902fe3 | p@chr10:113915737..113915754, - |
| 2.19e-27 | FFCP PHASE2:Hg19::chr1:219632507..219632553,-#_55c61452584793f3ce1b6462e982c5e9 | p@chr1:219632507..219632553, - |
| 2.19e-27 | FFCP PHASE1:Hg19::chr1:219632507..219632553,-#_55c61452584793f3ce1b6462e982c5e9 | p@chr1:219632507..219632553, - |
| 2.72e-27 | FFCP PHASE1:Hg19::chr15:83330983..83330997,-#_2180086863926c3afbc0cbfb36dc32e6 | p10@AP3B2 |
| 2.72e-27 | FFCP PHASE2:Hg19::chr15:83330983..83330997,-#_2180086863926c3afbc0cbfb36dc32e6 | p10@AP3B2 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr5:150138790..150138796,-#_fb672d1d01fed62f0c4d1ca8ef8a365e | p18@DCTN4 |
| 3.11e-27 | FFCP PHASE1:Hg19::chr20:61368258..61368275,+#_fb672d1d01fed62f0c4d1ca8ef8a365e | p@chr20:61368258..61368275, + |
| 3.11e-27 | FFCP PHASE1:Hg19::chr17:41003146..41003150,+#_fb672d1d01fed62f0c4d1ca8ef8a365e | p6@AOC3 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr17:41003146..41003150,+#_fb672d1d01fed62f0c4d1ca8ef8a365e | p6@AOC3 |
| 3.11e-27 | FFCP PHASE1:Hg19::chr5:150138790..150138796,-#_fb672d1d01fed62f0c4d1ca8ef8a365e | p18@DCTN4 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr20:61368258..61368275,+#_fb672d1d01fed62f0c4d1ca8ef8a365e | p@chr20:61368258..61368275, + |
| 4.02e-27 | FFCP PHASE1:Hg19::chr10:90750752..90750755,-#_344600eca6b5c4a821441b0f68eecff5 | p14@ACTA2 |
| 4.02e-27 | FFCP PHASE2:Hg19::chr10:90750752..90750755,-#_344600eca6b5c4a821441b0f68eecff5 | p14@ACTA2 |
| 4.06e-27 | FFCP PHASE1:Hg19::chr8:27023434..27023437,-#_1445fd38bf23d0e6ca89eb03f2b03e16 | p@chr8:27023434..27023437, - |
| 4.06e-27 | FFCP PHASE2:Hg19::chr8:27023434..27023437,-#_1445fd38bf23d0e6ca89eb03f2b03e16 | p@chr8:27023434..27023437, - |
| 6.28e-25 | FFCP PHASE2:Hg19::chr5:76435093..76435109,+#_5b929b3e15083a700b52c35aebebcf48 | p1@ENST00000511547, p1@ENST00000515356 |
| 6.28e-25 | FFCP PHASE1:Hg19::chr5:76435093..76435109,+#_5b929b3e15083a700b52c35aebebcf48 | p1@ENST00000511547, p1@ENST00000515356 |
| 1.29e-24 | FFCP PHASE2:Hg19::chrX:2670209..2670230,+#_d5bde80b587db5befaa53a04e6193390 | p3@XG |
| 1.29e-24 | FFCP PHASE1:Hg19::chrX:2670209..2670230,+#_d5bde80b587db5befaa53a04e6193390 | p3@XG |
| 1.41e-24 | FFCP PHASE1:Hg19::chr3:9911748..9911751,-#_93c93384e38ef9dfb48bf6163245dc26 | p@chr3:9911748..9911751, - |
| 1.41e-24 | FFCP PHASE2:Hg19::chr3:9911748..9911751,-#_93c93384e38ef9dfb48bf6163245dc26 | p@chr3:9911748..9911751, - |
| 1.94e-24 | FFCP PHASE2:Hg19::chr3:186575301..186575315,+#_0a634b51bcaea85f9b4163e9bc716096 | p@chr3:186575301..186575315, + |
| 1.94e-24 | FFCP PHASE1:Hg19::chr3:186575301..186575315,+#_0a634b51bcaea85f9b4163e9bc716096 | p@chr3:186575301..186575315, + |
| 2.1e-24 | FFCP PHASE2:Hg19::chr7:155044107..155044121,-#_51d8b7d9e30b117da446468394365591 | p@chr7:155044107..155044121, - |
| 2.1e-24 | FFCP PHASE1:Hg19::chr7:155044107..155044121,-#_51d8b7d9e30b117da446468394365591 | p@chr7:155044107..155044121, - |
| 1.02e-23 | FFCP PHASE1:Hg19::chrX:151999438..151999444,-#_d85dfb176d51f0deb913f8532f1e2186 | p3@CETN2 |
| 1.02e-23 | FFCP PHASE2:Hg19::chrX:151999438..151999444,-#_d85dfb176d51f0deb913f8532f1e2186 | p3@CETN2 |
| 1.14e-23 | FFCP PHASE1:Hg19::chr1:109939715..109939728,+#_dfad43f9d211631b496c16634bd7862b | p@chr1:109939715..109939728, + |
| 1.14e-23 | FFCP PHASE2:Hg19::chr1:109939715..109939728,+#_dfad43f9d211631b496c16634bd7862b | p@chr1:109939715..109939728, + |
| 1.28e-23 | FFCP PHASE1:Hg19::chr19:4512807..4512811,-#_dfbe016002f176110a976761481ac740 | p2@PLIN4 |
| 1.28e-23 | FFCP PHASE2:Hg19::chr11:77775063..77775072,+#_dfbe016002f176110a976761481ac740 | p4@THRSP |
| 1.28e-23 | FFCP PHASE1:Hg19::chr1:236205344..236205359,-#_dfbe016002f176110a976761481ac740 | p@chr1:236205344..236205359, - |
| 1.28e-23 | FFCP PHASE1:Hg19::chr11:77775063..77775072,+#_dfbe016002f176110a976761481ac740 | p4@THRSP |
| 1.28e-23 | FFCP PHASE2:Hg19::chr19:4512807..4512811,-#_dfbe016002f176110a976761481ac740 | p2@PLIN4 |
| 1.28e-23 | FFCP PHASE2:Hg19::chr1:236205344..236205359,-#_dfbe016002f176110a976761481ac740 | p@chr1:236205344..236205359, - |
| 1.44e-23 | FFCP PHASE1:Hg19::chr13:36706070..36706078,-#_fbec1f5e3481591764f5f1cdefac3cb9 | p@chr13:36706070..36706078, - |
| 1.44e-23 | FFCP PHASE2:Hg19::chr13:36706070..36706078,-#_fbec1f5e3481591764f5f1cdefac3cb9 | p@chr13:36706070..36706078, - |
| 1.61e-23 | FFCP PHASE2:Hg19::chr10:53458769..53458785,+#_63b8c57103e83b8ec0736b72ffa6921c | p@chr10:53458769..53458785, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr10:53458769..53458785,+#_63b8c57103e83b8ec0736b72ffa6921c | p@chr10:53458769..53458785, + |
| 1.87e-23 | FFCP PHASE1:Hg19::chr3:13610216..13610265,+#_c787e9027c07bc75d7df564cec4b29e2 | p3@FBLN2 |
| 1.87e-23 | FFCP PHASE2:Hg19::chr3:13610216..13610265,+#_c787e9027c07bc75d7df564cec4b29e2 | p3@FBLN2 |
| 1.9e-23 | FFCP PHASE1:Hg19::chr3:52822026..52822045,+#_f5b14ec3919eec24f06475fdea567e15 | p2@ITIH1 |
| 1.9e-23 | FFCP PHASE2:Hg19::chr3:52822026..52822045,+#_f5b14ec3919eec24f06475fdea567e15 | p2@ITIH1 |
| 6.02e-23 | FFCP PHASE1:Hg19::chr2:238273001..238273016,+#_813c2f8307bc48041ee1cd178c2aeb53 | p@chr2:238273001..238273016, + |
| 6.02e-23 | FFCP PHASE2:Hg19::chr2:238273001..238273016,+#_813c2f8307bc48041ee1cd178c2aeb53 | p@chr2:238273001..238273016, + |
| 7.94e-23 | FFCP PHASE2:Hg19::chr9:34590839..34590855,-#_fb47b7b9a04e8ea90c77c7775adebb6f | p@chr9:34590839..34590855, - |
| 7.94e-23 | FFCP PHASE1:Hg19::chr9:34590839..34590855,-#_fb47b7b9a04e8ea90c77c7775adebb6f | p@chr9:34590839..34590855, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells. Le Guellec et al, 2004.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
