Personal tools

UBERON:0004912: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 4: Line 4:
|namespace=
|namespace=
|def=
|def=
|xref=EHDAA2:0000171;;EMAPA:16561;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png;;VHOG:0001351
|xref=EHDAA2:0000171;;EMAPA:16561;;EMAPA:16565;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png;;VHOG:0001351
|is_a=UBERON:0000077;;UBERON:0003914;;UBERON:0009497
|is_a=UBERON:0003914;;UBERON:0009497
|synonym="hepatic diverticulum" RELATED [EMAPA:16561]
|synonym="hepatic diverticulum" RELATED [EMAPA:16561]
|comment=
|comment=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0004161
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0006235
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:05, 26 June 2012

Name:biliary bud
Xrefs:
links:

EHDAA2:0000171
EMAPA:16561
EMAPA:16565
[ 200px-Gray1088.png 200px-Gray1088.png]

VHOG:0001351
Synonyms: "hepatic diverticulum" RELATED [EMAPA:16561]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003914(epithelial tube),UBERON:0009497(epithelium of foregut-midgut junction)



Children

develops from:UBERON:0001173 (biliary tree),UBERON:0002110 (gallbladder)
part of:UBERON:0006242 (gall bladder primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004912 (biliary bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_5a602257860f31ae6792ece8522f4c51p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_5a602257860f31ae6792ece8522f4c51p@chr11:109223756..109223764, -
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_5a602257860f31ae6792ece8522f4c51p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_5a602257860f31ae6792ece8522f4c51p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_5a602257860f31ae6792ece8522f4c51p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_5a602257860f31ae6792ece8522f4c51p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_5a602257860f31ae6792ece8522f4c51p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_5a602257860f31ae6792ece8522f4c51p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_5a602257860f31ae6792ece8522f4c51p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_5a602257860f31ae6792ece8522f4c51p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_5a602257860f31ae6792ece8522f4c51p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_5a602257860f31ae6792ece8522f4c51p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_5a602257860f31ae6792ece8522f4c51p8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_5a602257860f31ae6792ece8522f4c51p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_5a602257860f31ae6792ece8522f4c51p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_5a602257860f31ae6792ece8522f4c51p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_5a602257860f31ae6792ece8522f4c51p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_5a602257860f31ae6792ece8522f4c51p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_5a602257860f31ae6792ece8522f4c51p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_5a602257860f31ae6792ece8522f4c51p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_5a602257860f31ae6792ece8522f4c51p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_5a602257860f31ae6792ece8522f4c51p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_5a602257860f31ae6792ece8522f4c51p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_5a602257860f31ae6792ece8522f4c51p@chr10:94580525..94580530, +
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_5a602257860f31ae6792ece8522f4c51p@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_5a602257860f31ae6792ece8522f4c51p@chr10:85585991..85586025, -
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_5a602257860f31ae6792ece8522f4c51p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_5a602257860f31ae6792ece8522f4c51p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_5a602257860f31ae6792ece8522f4c51p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_5a602257860f31ae6792ece8522f4c51p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_5a602257860f31ae6792ece8522f4c51p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_5a602257860f31ae6792ece8522f4c51p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_5a602257860f31ae6792ece8522f4c51p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_5a602257860f31ae6792ece8522f4c51p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_5a602257860f31ae6792ece8522f4c51p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_5a602257860f31ae6792ece8522f4c51p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_5a602257860f31ae6792ece8522f4c51p@chr10:117419958..117419964, +
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_5a602257860f31ae6792ece8522f4c51p@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_5a602257860f31ae6792ece8522f4c51p@chr1:138241693..138241697, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_5a602257860f31ae6792ece8522f4c51p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_5a602257860f31ae6792ece8522f4c51p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_5a602257860f31ae6792ece8522f4c51p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_5a602257860f31ae6792ece8522f4c51p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_5a602257860f31ae6792ece8522f4c51p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_5a602257860f31ae6792ece8522f4c51p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_5a602257860f31ae6792ece8522f4c51p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_5a602257860f31ae6792ece8522f4c51p@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_5a602257860f31ae6792ece8522f4c51p@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_5a602257860f31ae6792ece8522f4c51p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_5a602257860f31ae6792ece8522f4c51p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_5a602257860f31ae6792ece8522f4c51p@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_5a602257860f31ae6792ece8522f4c51p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_5a602257860f31ae6792ece8522f4c51p@chr7:118133901..118133904, -
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_5a602257860f31ae6792ece8522f4c51p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_5a602257860f31ae6792ece8522f4c51p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_5a602257860f31ae6792ece8522f4c51p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_5a602257860f31ae6792ece8522f4c51p@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_5a602257860f31ae6792ece8522f4c51p@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_5a602257860f31ae6792ece8522f4c51p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_5a602257860f31ae6792ece8522f4c51p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_5a602257860f31ae6792ece8522f4c51p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_5a602257860f31ae6792ece8522f4c51p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_5a602257860f31ae6792ece8522f4c51p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_5a602257860f31ae6792ece8522f4c51p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_5a602257860f31ae6792ece8522f4c51p@chr10:93499468..93499494, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_5a602257860f31ae6792ece8522f4c51p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_5a602257860f31ae6792ece8522f4c51p@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_5a602257860f31ae6792ece8522f4c51p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_5a602257860f31ae6792ece8522f4c51p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_5a602257860f31ae6792ece8522f4c51p@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_5a602257860f31ae6792ece8522f4c51p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_5a602257860f31ae6792ece8522f4c51p@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_5a602257860f31ae6792ece8522f4c51p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_5a602257860f31ae6792ece8522f4c51p@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_5a602257860f31ae6792ece8522f4c51p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_5a602257860f31ae6792ece8522f4c51p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_5a602257860f31ae6792ece8522f4c51p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_5a602257860f31ae6792ece8522f4c51p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_5a602257860f31ae6792ece8522f4c51p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_5a602257860f31ae6792ece8522f4c51p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_5a602257860f31ae6792ece8522f4c51p@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_5a602257860f31ae6792ece8522f4c51p@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_5a602257860f31ae6792ece8522f4c51p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_5a602257860f31ae6792ece8522f4c51p@chr17:35945332..35945335, +
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_5a602257860f31ae6792ece8522f4c51p@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_5a602257860f31ae6792ece8522f4c51p@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_5a602257860f31ae6792ece8522f4c51p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_5a602257860f31ae6792ece8522f4c51p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_5a602257860f31ae6792ece8522f4c51p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_5a602257860f31ae6792ece8522f4c51p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_5a602257860f31ae6792ece8522f4c51p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_5a602257860f31ae6792ece8522f4c51p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_5a602257860f31ae6792ece8522f4c51p4@Pag1
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_5a602257860f31ae6792ece8522f4c51p@chr8:3311867..3311873, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_5a602257860f31ae6792ece8522f4c51p@chr9:42915185..42915192, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004912&oldid=1836064"