UBERON:0005172: Difference between revisions
From FANTOM5_SSTAR
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|obo_creation_date= | |obo_creation_date= | ||
|subset=organ_slim | |subset=organ_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} |
Revision as of 17:06, 26 June 2012
Name: | abdomen organ | |
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Definition: | "An organ that is part of an abdomen [Obol]." [OBOL:automatic] | |
Xrefs: |
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Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0005173(abdominal segment element) |
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Children
is a: | UBERON:0002107 (liver),UBERON:0002113 (kidney),UBERON:0006858 (adrenal/interrenal gland),UBERON:0017672 (abdominal viscera) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10081-102A9 (adrenal gland, adult, pool1)
- 10086-102B5 (liver, fetal, pool1)
- 10088-102B7
- 10089-102B8
- 10095-102C5
... further results Mouse (Mus musculus)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10081-102A9 (adrenal gland, adult, pool1)
- 10086-102B5 (liver, fetal, pool1)
- 10088-102B7
- 10089-102B8
- 10095-102C5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005172 (abdomen organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data