UBERON:0006562: Difference between revisions
From FANTOM5_SSTAR
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|subset=grouping_class;;uberon_slim | |subset=grouping_class;;uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
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|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:07, 26 June 2012
| Name: | pharynx | ||
|---|---|---|---|
| Definition: | "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465] | ||
| Xrefs: |
| ||
| Comments: | Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises | ||
| Subset: |
grouping_class uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract) |
|---|
Children
| is a: | UBERON:0001042 (chordate pharynx) |
|---|---|
| derives from: | FF:0100819 (pharyngeal cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10723-110A3 (pharyngeal carcinoma cell line:Detroit 562)
- 10724-110A4
- 10733-110B4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006562 (pharynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.66e-65 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_49425d71fafd36db3d6fed7f27463755 | p4@uc009bpa.1 |
| 1.66e-65 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_49425d71fafd36db3d6fed7f27463755 | p4@uc009bpa.1 |
| 1.86e-64 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_f39a541f5bb956467989af9577d8b75d | p8@uc009bpa.1 |
| 1.86e-64 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_f39a541f5bb956467989af9577d8b75d | p8@uc009bpa.1 |
| 8.23e-63 | FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_3f4b24c552d9f16ee3f1aa436251b1bb | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 8.23e-63 | FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_3f4b24c552d9f16ee3f1aa436251b1bb | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 1.32e-61 | FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_e921484b91ef74a4a952b3c1f4317d77 | p@chr6:41491752..41491776, - |
| 1.32e-61 | FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_e921484b91ef74a4a952b3c1f4317d77 | p@chr12:108361918..108361930, - |
| 1.32e-61 | FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_e921484b91ef74a4a952b3c1f4317d77 | p@chr6:41491752..41491776, - |
| 1.32e-61 | FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_e921484b91ef74a4a952b3c1f4317d77 | p@chr12:108361918..108361930, - |
| 2.27e-60 | FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_3ada883b8894c62a8bec1db9e663870d | p2@ENSMUST00000103283 |
| 2.27e-60 | FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_3ada883b8894c62a8bec1db9e663870d | p2@ENSMUST00000103283 |
| 2.83e-60 | FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_1da6a25d0e8d0fc0908fc85aa0c8e4b8 | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 2.83e-60 | FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_1da6a25d0e8d0fc0908fc85aa0c8e4b8 | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 3.96e-59 | FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_54754195d70620c76669b632c1d6e6b7 | p@chr9:44807434..44807445, - |
| 3.96e-59 | FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_54754195d70620c76669b632c1d6e6b7 | p@chr9:44807434..44807445, - |
| 4.91e-59 | FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_a5b6c9c5f2dd97b6eed788f277cd4497 | p@chr6:41494001..41494028, + |
| 4.91e-59 | FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_a5b6c9c5f2dd97b6eed788f277cd4497 | p@chr6:41494001..41494028, + |
| 1.18e-58 | FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_6e4360c4d784533963e7e5e7025e59f4 | p@chr9:44809185..44809215, - |
| 1.18e-58 | FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_6e4360c4d784533963e7e5e7025e59f4 | p@chr9:44809185..44809215, - |
| 1.22e-58 | FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_f4ebcda05f98d20221250dd5147dcb88 | p11@Prkcq |
| 1.22e-58 | FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_f4ebcda05f98d20221250dd5147dcb88 | p11@Prkcq |
| 3.55e-58 | FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_10f96d56ad4afa00bbd163097f8ace02 | p@chr14:54791784..54791787, + |
| 3.55e-58 | FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_10f96d56ad4afa00bbd163097f8ace02 | p@chr14:54791784..54791787, + |
| 6.17e-58 | FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_3d72901305244bb38c15911d44ce2560 | p1@ENSMUST00000103263 |
| 6.17e-58 | FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_3d72901305244bb38c15911d44ce2560 | p1@ENSMUST00000103263 |
| 1.17e-57 | FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_88cc903171308355e7c6c76e62d8c62e | p5@Themis |
| 1.17e-57 | FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_88cc903171308355e7c6c76e62d8c62e | p5@Themis |
| 1.36e-57 | FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_83bd00efb33fb970e35573dfa7f101b2 | p5@uc009bpa.1 |
| 1.36e-57 | FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_83bd00efb33fb970e35573dfa7f101b2 | p5@uc009bpa.1 |
| 1.46e-57 | FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_f66bffe4adccfa20b27dc34a407d4645 | p@chr9:44793518..44793537, + |
| 1.46e-57 | FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_f66bffe4adccfa20b27dc34a407d4645 | p@chr9:44793518..44793537, + |
| 1.87e-57 | FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_e7cd7f8eac81819493cd007585399d9b | p@chr6:41071548..41071565, + |
| 1.87e-57 | FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_e7cd7f8eac81819493cd007585399d9b | p@chr6:41071548..41071565, + |
| 3.74e-57 | FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_e7189c9c6ab3ac2c6608c650744a6c58 | p2@uc009bnp.1, p2@uc012eki.1 |
| 3.74e-57 | FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_e7189c9c6ab3ac2c6608c650744a6c58 | p2@uc009bnp.1, p2@uc012eki.1 |
| 2.11e-56 | FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_a2e1560e323b9e285b04258308fb0915 | p5@Tcf7 |
| 2.11e-56 | FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_a2e1560e323b9e285b04258308fb0915 | p5@Tcf7 |
| 7.76e-56 | FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_ae72c97c310d2af44131d5f3158e6a8b | p@chr14:61328148..61328173, + |
| 7.76e-56 | FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_ae72c97c310d2af44131d5f3158e6a8b | p@chr14:61328148..61328173, + |
| 1.22e-55 | FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_778f341df1da8a9cb7777667e466d9e1 | p2@uc009bpa.1 |
| 1.22e-55 | FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_778f341df1da8a9cb7777667e466d9e1 | p2@uc009bpa.1 |
| 1.4e-55 | FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_1c1eb623433fe781d0c17256e3889eac | p2@Sh2d1a |
| 1.4e-55 | FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_1c1eb623433fe781d0c17256e3889eac | p2@Sh2d1a |
| 2.37e-55 | FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_4839a7fa18371fbac588307e67ab956d | p1@uc012ekr.1 |
| 2.37e-55 | FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_4839a7fa18371fbac588307e67ab956d | p1@uc012ekr.1 |
| 2.97e-55 | FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_a7779aa3d215f00c7e121f18bd6c9ccd | p2@1810009J06Rik |
| 2.97e-55 | FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_a7779aa3d215f00c7e121f18bd6c9ccd | p2@1810009J06Rik |
| 4.31e-55 | FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_ecdbe70ce79a4f17490ce1900a150cde | p1@uc012ekk.1 |
| 4.31e-55 | FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_ecdbe70ce79a4f17490ce1900a150cde | p1@uc012ekk.1 |
| 5.01e-55 | FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_3494bdc10dbefe970bbec5a46bd664d2 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 5.01e-55 | FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_3494bdc10dbefe970bbec5a46bd664d2 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 5.01e-55 | FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_3494bdc10dbefe970bbec5a46bd664d2 | p1@ENSMUST00000103265 |
| 5.01e-55 | FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_3494bdc10dbefe970bbec5a46bd664d2 | p1@ENSMUST00000103265 |
| 1.07e-54 | FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_c93c77dd6b35f9b5cf3949c5033d4e30 | p@chr7:133512043..133512060, - |
| 1.07e-54 | FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_c93c77dd6b35f9b5cf3949c5033d4e30 | p@chr7:133512043..133512060, - |
| 1.32e-54 | FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_05a5bee7b845e18e60768be8e86c6502 | p2@Gm5409 |
| 1.32e-54 | FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_05a5bee7b845e18e60768be8e86c6502 | p2@Gm5409 |
| 2.0e-54 | FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_8317f74d1fe3bf202e496c3dfa817353 | p5@Trat1 |
| 2.0e-54 | FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_8317f74d1fe3bf202e496c3dfa817353 | p5@Trat1 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_d7179257716c96c15b0f5c5a355faa25 | p19@AMOTL1 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_d7179257716c96c15b0f5c5a355faa25 | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr21:42749543..42749555,+#_d7179257716c96c15b0f5c5a355faa25 | p@chr21:42749543..42749555, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_d7179257716c96c15b0f5c5a355faa25 | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr21:42749543..42749555,+#_d7179257716c96c15b0f5c5a355faa25 | p@chr21:42749543..42749555, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_d7179257716c96c15b0f5c5a355faa25 | p19@AMOTL1 |
| 2.2e-54 | FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_4de3a11bbde59c85a415b3ea37c652ae | p4@Trat1 |
| 2.2e-54 | FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_4de3a11bbde59c85a415b3ea37c652ae | p4@Trat1 |
| 2.23e-54 | FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_5964c7f32024816a9427526fbe412497 | p@chr6:41489240..41489252, + |
| 2.23e-54 | FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_5964c7f32024816a9427526fbe412497 | p@chr6:41489240..41489252, + |
| 4.16e-54 | FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_2b5100fd979d95bfe016c1f24e78c6c2 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 4.16e-54 | FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_2b5100fd979d95bfe016c1f24e78c6c2 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 4.37e-54 | FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_d5440fc9bf2872a6ead69664fe4802c1 | p@chr6:41494376..41494389, - |
| 4.37e-54 | FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_d5440fc9bf2872a6ead69664fe4802c1 | p1@ENSMUST00000103282 |
| 4.37e-54 | FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_d5440fc9bf2872a6ead69664fe4802c1 | p@chr6:41494376..41494389, - |
| 4.37e-54 | FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_d5440fc9bf2872a6ead69664fe4802c1 | p1@ENSMUST00000103282 |
| 5.42e-54 | FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_09e23114ba1902bd1a346573b65a0302 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 5.42e-54 | FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_09e23114ba1902bd1a346573b65a0302 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 5.43e-54 | FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_b7e58aadeb503493f9dc97569ea47bcf | p@chr14:54794540..54794554, + |
| 5.43e-54 | FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_b7e58aadeb503493f9dc97569ea47bcf | p@chr14:54794540..54794554, + |
| 5.9e-54 | FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_f589cb55d8dffce7cbb8f60d840818c4 | p@chr14:54496363..54496388, + |
| 5.9e-54 | FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_f589cb55d8dffce7cbb8f60d840818c4 | p@chr6:41491801..41491815, - |
| 5.9e-54 | FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_f589cb55d8dffce7cbb8f60d840818c4 | p@chr6:41491801..41491815, - |
| 5.9e-54 | FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_f589cb55d8dffce7cbb8f60d840818c4 | p@chr14:54496363..54496388, + |
| 6.18e-54 | FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_d4631a5c2bc91fb24c9d4b83d84953ad | p@chr6:41492643..41492662, + |
| 6.18e-54 | FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_d4631a5c2bc91fb24c9d4b83d84953ad | p@chr6:41492643..41492662, + |
| 6.96e-54 | FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_50ecfdf11c5f60a15d0d8bc8698e3eb7 | p1@Il13 |
| 6.96e-54 | FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_50ecfdf11c5f60a15d0d8bc8698e3eb7 | p1@Il13 |
| 7.53e-54 | FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_82f4f67521de0a79a19be71767ba5024 | p@chr6:41492605..41492621, + |
| 7.53e-54 | FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_82f4f67521de0a79a19be71767ba5024 | p@chr6:41492605..41492621, + |
| 7.54e-54 | FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_b71b4593a721009088df22331daa3140 | p7@Lat |
| 7.54e-54 | FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_b71b4593a721009088df22331daa3140 | p7@Lat |
| 8.18e-54 | FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_af305a5bee2e856ca71757be72c7e88e | p@chr6:41138311..41138333, + |
| 8.18e-54 | FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_af305a5bee2e856ca71757be72c7e88e | p@chr6:41138311..41138333, + |
| 1.05e-53 | FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_26e7a7851c8ae3d0e03b1779c67e11a4 | p5@uc009bnp.1, p5@uc012eki.1 |
| 1.05e-53 | FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_26e7a7851c8ae3d0e03b1779c67e11a4 | p5@uc009bnp.1, p5@uc012eki.1 |
| 1.16e-53 | FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_21aa7c8a8c0930465245bd5a1d382439 | p@chr4:125978325..125978339, - |
| 1.16e-53 | FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_21aa7c8a8c0930465245bd5a1d382439 | p8@Lat |
| 1.16e-53 | FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_21aa7c8a8c0930465245bd5a1d382439 | p6@uc009bpa.1 |
| 1.16e-53 | FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_21aa7c8a8c0930465245bd5a1d382439 | p@chr4:125978325..125978339, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
