CL:0000117: Difference between revisions
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|develops_from= | |develops_from=CL:0000337 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 12:59, 27 June 2012
| Name: | CNS neuron (sensu Vertebrata) |
|---|---|
| Namespace: | cell |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000540(neuron) |
|---|---|
| develops_from: | CL:0000337(neuroblast (sensu Vertebrata)) |
Children
| is a: | CL:0000120 (granule cell),FF:0000121 (central nervous system neuron),CL:0002610 (raphe nuclei neuron),CL:0002611 (neuron of the dorsal spinal cord),CL:0002612 (neuron of the ventral spinal cord),CL:0002614 (neuron of the substantia nigra),CL:0012001 (neuron of the forebrain) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11495-119F1
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11642-122D4
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11645-122D7 (Mouse Neurons - raphe, donor3)
- 11646-122D8 (Mouse Neurons - striatal, donor3)
... further results Mouse (Mus musculus)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11495-119F1
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11642-122D4
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11645-122D7 (Mouse Neurons - raphe, donor3)
- 11646-122D8 (Mouse Neurons - striatal, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000117 (CNS neuron (sensu Vertebrata)), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.71e-70 | FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_f695e620609551fb1195dc2da24dea88 | p@chr8:125944624..125944663, + |
| 3.71e-70 | FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_f695e620609551fb1195dc2da24dea88 | p@chr8:125944624..125944663, + |
| 1.29e-63 | FFCP PHASE2:Mm9::chr9:75414533..75414538,-#_d613dc526510dea4ecfc8b5f535d0bf4 | p@chr9:75414533..75414538, - |
| 1.29e-63 | FFCP PHASE1:Mm9::chr9:75414533..75414538,-#_d613dc526510dea4ecfc8b5f535d0bf4 | p@chr9:75414533..75414538, - |
| 3.89e-63 | FFCP PHASE2:Mm9::chr5:38550223..38550234,-#_a0ff801154faf004e9f0cf5f325af790 | p@chr5:38550223..38550234, - |
| 3.89e-63 | FFCP PHASE1:Mm9::chr5:38550223..38550234,-#_a0ff801154faf004e9f0cf5f325af790 | p@chr5:38550223..38550234, - |
| 4.3e-62 | FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_c3e22985fdbf8a8c38fc48a9f55375f2 | p@chr8:125944694..125944740, + |
| 4.3e-62 | FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_c3e22985fdbf8a8c38fc48a9f55375f2 | p@chr8:125944694..125944740, + |
| 3.77e-60 | FFCP PHASE2:Mm9::chr12:28025392..28025407,-#_ee96711388fa5b7e52c55826929fa366 | p@chr12:28025392..28025407, - |
| 3.77e-60 | FFCP PHASE1:Mm9::chr12:28025392..28025407,-#_ee96711388fa5b7e52c55826929fa366 | p@chr12:28025392..28025407, - |
| 1.58e-59 | FFCP PHASE1:Mm9::chr9:49312416..49312430,-#_e4165b7789bf6f5078629c7b6383e358 | p@chr9:49312416..49312430, - |
| 1.58e-59 | FFCP PHASE2:Mm9::chr9:49312416..49312430,-#_e4165b7789bf6f5078629c7b6383e358 | p@chr9:49312416..49312430, - |
| 7.76e-59 | FFCP PHASE1:Mm9::chr11:104189552..104189556,-#_654f8c05a410e016b78574a2ef2c2de5 | p@chr11:104189552..104189556, - |
| 7.76e-59 | FFCP PHASE2:Mm9::chr11:104189552..104189556,-#_654f8c05a410e016b78574a2ef2c2de5 | p@chr11:104189552..104189556, - |
| 2.27e-58 | FFCP PHASE2:Mm9::chr1:38851929..38851932,-#_a08f8eb7a00ed5a044c95b29994fc22a | p@chr1:38851929..38851932, - |
| 2.27e-58 | FFCP PHASE1:Mm9::chr1:38851929..38851932,-#_a08f8eb7a00ed5a044c95b29994fc22a | p@chr1:38851929..38851932, - |
| 4.76e-56 | FFCP PHASE1:Mm9::chr8:125944529..125944543,+#_2c29872b56fe42279f7cd7457154b9b2 | p@chr8:125944529..125944543, + |
| 4.76e-56 | FFCP PHASE2:Mm9::chr8:125944529..125944543,+#_2c29872b56fe42279f7cd7457154b9b2 | p@chr8:125944529..125944543, + |
| 1.06e-55 | FFCP PHASE1:Mm9::chr19:47098414..47098424,+#_be00884876b2c7e0fac0d175c7de70aa | p@chr19:47098414..47098424, + |
| 1.06e-55 | FFCP PHASE2:Mm9::chr19:47098414..47098424,+#_be00884876b2c7e0fac0d175c7de70aa | p@chr19:47098414..47098424, + |
| 2.68e-55 | FFCP PHASE1:Mm9::chr17:6106475..6106488,-#_9c4b01fc52f9ffe61c900d0c9edaee6f | p@chr17:6106475..6106488, - |
| 2.68e-55 | FFCP PHASE2:Mm9::chr17:6106475..6106488,-#_9c4b01fc52f9ffe61c900d0c9edaee6f | p@chr17:6106475..6106488, - |
| 5.8e-55 | FFCP PHASE2:Mm9::chr3:8545615..8545628,+#_f96cb540c2932ea947227c9b9cd7b0a7 | p@chr3:8545615..8545628, + |
| 5.8e-55 | FFCP PHASE1:Mm9::chr3:8545615..8545628,+#_f96cb540c2932ea947227c9b9cd7b0a7 | p@chr3:8545615..8545628, + |
| 1.61e-54 | FFCP PHASE2:Mm9::chr4:43455274..43455283,+#_576ccf89bdcd631ca6e0a0a978f831ec | p12@Tesk1 |
| 1.61e-54 | FFCP PHASE1:Mm9::chr4:43455274..43455283,+#_576ccf89bdcd631ca6e0a0a978f831ec | p12@Tesk1 |
| 2.57e-54 | FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_6acbd926339772bd57a48a2d001788dc | p22@Zmiz1 |
| 2.57e-54 | FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_6acbd926339772bd57a48a2d001788dc | p22@Zmiz1 |
| 3.64e-54 | FFCP PHASE1:Mm9::chr8:111061744..111061761,-#_4fa5bc05955cbb8760fc60a3c38c2b99 | p@chr8:111061744..111061761, - |
| 3.64e-54 | FFCP PHASE2:Mm9::chr8:111061744..111061761,-#_4fa5bc05955cbb8760fc60a3c38c2b99 | p@chr8:111061744..111061761, - |
| 5.16e-54 | FFCP PHASE2:Mm9::chr11:104182657..104182673,+#_b9e0fca8179add8e4ceb1a0b6acc9e3a | p@chr11:104182657..104182673, + |
| 5.16e-54 | FFCP PHASE1:Mm9::chr11:104182657..104182673,+#_b9e0fca8179add8e4ceb1a0b6acc9e3a | p@chr11:104182657..104182673, + |
| 6.04e-54 | FFCP PHASE2:Mm9::chr11:104163705..104163726,-#_2ca3895fe1b405130bac179ee348836e | p@chr11:104163705..104163726, - |
| 6.04e-54 | FFCP PHASE1:Mm9::chr11:104163705..104163726,-#_2ca3895fe1b405130bac179ee348836e | p@chr11:104163705..104163726, - |
| 3.91e-53 | FFCP PHASE2:Mm9::chr8:125942045..125942056,+#_b236d30395e9ddcaf5683dbcb62a029f | p@chr8:125942045..125942056, + |
| 3.91e-53 | FFCP PHASE1:Mm9::chr8:125942045..125942056,+#_b236d30395e9ddcaf5683dbcb62a029f | p@chr8:125942045..125942056, + |
| 3.97e-53 | FFCP PHASE2:Mm9::chr9:21823118..21823129,-#_ab59fe5a1b3fc0a92e8c3d702aa150c8 | p@chr9:21823118..21823129, - |
| 3.97e-53 | FFCP PHASE1:Mm9::chr9:21823118..21823129,-#_ab59fe5a1b3fc0a92e8c3d702aa150c8 | p@chr9:21823118..21823129, - |
| 5.06e-53 | FFCP PHASE1:Mm9::chr7:89319756..89319761,+#_fb3256bcde33841d6667cbe2887041b3 | p4@Sh3gl3 |
| 5.06e-53 | FFCP PHASE2:Mm9::chr7:89319756..89319761,+#_fb3256bcde33841d6667cbe2887041b3 | p4@Sh3gl3 |
| 6.62e-53 | FFCP PHASE2:Mm9::chr15:82123103..82123106,+#_dd67c97e3d826d492e2d4819bad023cf | p@chr15:82123103..82123106, + |
| 6.62e-53 | FFCP PHASE1:Mm9::chr15:82123103..82123106,+#_dd67c97e3d826d492e2d4819bad023cf | p@chr15:82123103..82123106, + |
| 7.51e-53 | FFCP PHASE1:Mm9::chr10:127896295..127896304,+#_03ed38adec19d3015b4b8d6ed0cd28ef | p6@Smarcc2 |
| 7.51e-53 | FFCP PHASE2:Mm9::chr10:127896295..127896304,+#_03ed38adec19d3015b4b8d6ed0cd28ef | p6@Smarcc2 |
| 8.0e-53 | FFCP PHASE2:Mm9::chr14:55593026..55593064,-#_ebadeab51f9d6e10450351c608a579f4 | p@chr14:55593026..55593064, - |
| 8.0e-53 | FFCP PHASE1:Mm9::chr14:55593026..55593064,-#_ebadeab51f9d6e10450351c608a579f4 | p@chr14:55593026..55593064, - |
| 1.15e-52 | FFCP PHASE1:Mm9::chr14:62912065..62912077,-#_d910efedf88a4d3d7a1392a00da7be2e | p3@Dleu7 |
| 1.15e-52 | FFCP PHASE2:Mm9::chr14:62912065..62912077,-#_d910efedf88a4d3d7a1392a00da7be2e | p3@Dleu7 |
| 1.16e-52 | FFCP PHASE1:Mm9::chr13:98015930..98015942,+#_34f05468b230adeec8a4412fd0d88292 | p@chr13:98015930..98015942, + |
| 1.16e-52 | FFCP PHASE2:Mm9::chr13:98015930..98015942,+#_34f05468b230adeec8a4412fd0d88292 | p@chr13:98015930..98015942, + |
| 3.34e-52 | FFCP PHASE2:Mm9::chr15:101676842..101676853,-#_b17f10b059c561e750e94f49e5362d09 | p@chr15:101676842..101676853, - |
| 3.34e-52 | FFCP PHASE1:Mm9::chr15:101676842..101676853,-#_b17f10b059c561e750e94f49e5362d09 | p@chr15:101676842..101676853, - |
| 7.69e-52 | FFCP PHASE2:Mm9::chr4:130168084..130168097,+#_3e07b4e143bc0060e902bb07e5206e86 | p@chr4:130168084..130168097, + |
| 7.69e-52 | FFCP PHASE1:Mm9::chr4:130168084..130168097,+#_3e07b4e143bc0060e902bb07e5206e86 | p@chr4:130168084..130168097, + |
| 7.85e-52 | FFCP PHASE2:Mm9::chr8:125941995..125942014,+#_2602b16afd0db114da8df4311f5ccf77 | p@chr8:125941995..125942014, + |
| 7.85e-52 | FFCP PHASE1:Mm9::chr8:125941995..125942014,+#_2602b16afd0db114da8df4311f5ccf77 | p@chr8:125941995..125942014, + |
| 1.06e-51 | FFCP PHASE2:Mm9::chr12:11889272..11889293,+#_8a642fdc5faf1a2347f8ad845b0e00f3 | p@chr12:11889272..11889293, + |
| 1.06e-51 | FFCP PHASE1:Mm9::chr12:11889272..11889293,+#_8a642fdc5faf1a2347f8ad845b0e00f3 | p@chr12:11889272..11889293, + |
| 2.38e-51 | FFCP PHASE2:Mm9::chr7:17200127..17200137,-#_5afe5a8df08ada0aefaddc68a112dcca | p11@Grlf1 |
| 2.38e-51 | FFCP PHASE1:Mm9::chr7:17200127..17200137,-#_5afe5a8df08ada0aefaddc68a112dcca | p11@Grlf1 |
| 2.67e-51 | FFCP PHASE2:Mm9::chr16:73045578..73045594,+#_902b84988e20840e019c990ae82eec6d | p@chr16:73045578..73045594, + |
| 2.67e-51 | FFCP PHASE1:Mm9::chr16:73045578..73045594,+#_902b84988e20840e019c990ae82eec6d | p@chr16:73045578..73045594, + |
| 2.03e-50 | FFCP PHASE2:Mm9::chr7:126328112..126328133,-#_810981836e6643a7dc738e0e7f8f7345 | p3@Gpr139 |
| 2.03e-50 | FFCP PHASE1:Mm9::chr7:126328112..126328133,-#_810981836e6643a7dc738e0e7f8f7345 | p3@Gpr139 |
| 1.43e-49 | FFCP PHASE1:Mm9::chr10:127058298..127058314,-#_3337da2dbcc03ccfbad3b068198d1496 | p6@Lrp1 |
| 1.43e-49 | FFCP PHASE2:Mm9::chr10:127058298..127058314,-#_3337da2dbcc03ccfbad3b068198d1496 | p6@Lrp1 |
| 1.69e-49 | FFCP PHASE1:Mm9::chr5:37677669..37677680,+#_63ce0f2bafb7a4db6df2729396111559 | p@chr5:37677669..37677680, + |
| 1.69e-49 | FFCP PHASE2:Mm9::chr5:37677669..37677680,+#_63ce0f2bafb7a4db6df2729396111559 | p@chr5:37677669..37677680, + |
| 1.77e-49 | FFCP PHASE1:Mm9::chr5:37839684..37839691,-#_bec62233b66a9b173d9a6b39a0228773 | p@chr5:37839684..37839691, - |
| 1.77e-49 | FFCP PHASE2:Mm9::chr5:37839684..37839691,-#_bec62233b66a9b173d9a6b39a0228773 | p@chr5:37839684..37839691, - |
| 2.13e-49 | FFCP PHASE2:Mm9::chr4:69586931..69586957,-#_f9e385410b557876d5cedea9aa57f3e4 | p2@ENSMUST00000120560 |
| 2.13e-49 | FFCP PHASE1:Mm9::chr4:69586931..69586957,-#_f9e385410b557876d5cedea9aa57f3e4 | p2@ENSMUST00000120560 |
| 2.32e-49 | FFCP PHASE2:Mm9::chr14:40284476..40284479,-#_0bfc08ee5b9a8d8b972582b1b97a2f59 | p@chr14:40284476..40284479, - |
| 2.32e-49 | FFCP PHASE1:Mm9::chr14:40284476..40284479,-#_0bfc08ee5b9a8d8b972582b1b97a2f59 | p@chr14:40284476..40284479, - |
| 4.74e-49 | FFCP PHASE1:Mm9::chr14:76956449..76956460,-#_413b0faf9e758e8cf93abc213cdf913c | p4@Serp2 |
| 4.74e-49 | FFCP PHASE2:Mm9::chr14:76956449..76956460,-#_413b0faf9e758e8cf93abc213cdf913c | p4@Serp2 |
| 6.8e-49 | FFCP PHASE2:Mm9::chr18:86880274..86880286,+#_b3a3b6721b7e9574dfec7b3dc02d4bd1 | p4@Cbln2 |
| 6.8e-49 | FFCP PHASE1:Mm9::chr18:86880274..86880286,+#_b3a3b6721b7e9574dfec7b3dc02d4bd1 | p4@Cbln2 |
| 7.23e-49 | FFCP PHASE1:Mm9::chr19:47098035..47098046,+#_924efda5fdd6a5bafd1f7b781773cc5b | p@chr19:47098035..47098046, + |
| 7.23e-49 | FFCP PHASE2:Mm9::chr19:47098035..47098046,+#_924efda5fdd6a5bafd1f7b781773cc5b | p@chr19:47098035..47098046, + |
| 8.09e-49 | FFCP PHASE1:Mm9::chr5:24104722..24104736,-#_49d7c85ffc6c0d7112b4bb5c3951d3be | p9@Smarcd3 |
| 8.09e-49 | FFCP PHASE2:Mm9::chr5:24104722..24104736,-#_49d7c85ffc6c0d7112b4bb5c3951d3be | p9@Smarcd3 |
| 8.78e-49 | FFCP PHASE1:Mm9::chr18:36172971..36172981,+#_0836f05b403a6b66de3ad67a4f969d71 | p@chr18:36172971..36172981, + |
| 8.78e-49 | FFCP PHASE2:Mm9::chr18:36172971..36172981,+#_0836f05b403a6b66de3ad67a4f969d71 | p@chr18:36172971..36172981, + |
| 1.04e-48 | FFCP PHASE2:Mm9::chr13:54676369..54676378,+#_76f3aa4635b6744b57598bf040072f61 | p2@Arl10 |
| 1.04e-48 | FFCP PHASE1:Mm9::chr13:54676369..54676378,+#_76f3aa4635b6744b57598bf040072f61 | p2@Arl10 |
| 1.31e-48 | FFCP PHASE1:Mm9::chr11:70846402..70846415,-#_7a981352311dfe903de26cb7e2ca736b | p@chr11:70846402..70846415, - |
| 1.31e-48 | FFCP PHASE2:Mm9::chr11:70846402..70846415,-#_7a981352311dfe903de26cb7e2ca736b | p@chr11:70846402..70846415, - |
| 4.96e-48 | FFCP PHASE2:Mm9::chr10:80693503..80693514,-#_bcf6afa9d3c3106d420114586ee0568c | p2@Atcay |
| 4.96e-48 | FFCP PHASE1:Mm9::chr10:80693503..80693514,-#_bcf6afa9d3c3106d420114586ee0568c | p2@Atcay |
| 6.4e-48 | FFCP PHASE1:Mm9::chr14:20694506..20694548,-#_b01a7695d4ee6326012ec1879112d5cc | p@chr14:20694506..20694548, - |
| 6.4e-48 | FFCP PHASE2:Mm9::chr14:20694506..20694548,-#_b01a7695d4ee6326012ec1879112d5cc | p@chr14:20694506..20694548, - |
| 1.0e-47 | FFCP PHASE1:Mm9::chr7:58879965..58879978,+#_2091f21815b7c3f70b7ca9c8bbd3041e | p@chr7:58879965..58879978, + |
| 1.0e-47 | FFCP PHASE2:Mm9::chr7:58879965..58879978,+#_2091f21815b7c3f70b7ca9c8bbd3041e | p@chr7:58879965..58879978, + |
| 1.11e-47 | FFCP PHASE1:Mm9::chr9:121846403..121846415,+#_d23de3a1f39d6e644539bf1b78b0698e | p2@1700048O20Rik |
| 1.11e-47 | FFCP PHASE2:Mm9::chr9:121846403..121846415,+#_d23de3a1f39d6e644539bf1b78b0698e | p2@1700048O20Rik |
| 1.4e-47 | FFCP PHASE2:Mm9::chr15:74394100..74394126,+#_0df52072847259cdd47b2611023fd353 | p5@Bai1 |
| 1.4e-47 | FFCP PHASE1:Mm9::chr15:74394100..74394126,+#_0df52072847259cdd47b2611023fd353 | p5@Bai1 |
| 1.65e-47 | FFCP PHASE1:Mm9::chr1:84692822..84692836,-#_7d84ae80adf3ddbfc226f37928dab188 | p10@Dner |
| 1.65e-47 | FFCP PHASE2:Mm9::chr1:84692822..84692836,-#_7d84ae80adf3ddbfc226f37928dab188 | p10@Dner |
