Personal tools

UBERON:0002186: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0002186 |name=bronchiole |namespace= |def="the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Br...")
 
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 4: Line 4:
|namespace=
|namespace=
|def="the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole]
|def="the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole]
|xref=BTO:0002375;;EHDAA:8171;;EHDAA:8183;;EHDAA:8199;;EHDAA:8221;;FMA:7410;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png;;MA:0000422;;ncithesaurus:Bronchiole;;OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA;;SCTID:278982001;;VHOG:0000675
|xref=BTO:0002375;;EHDAA:8171;;EHDAA:8183;;EHDAA:8199;;EHDAA:8221;;FMA:7410;;http://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png;;MA:0000422;;ncithesaurus:Bronchiole;;OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA;;SCTID:278982001;;VHOG:0000675
|is_a=UBERON:0000063;;UBERON:0000077
|is_a=UBERON:0000072
|synonym="bronchiolus" RELATED [BTO:0002375];;"lobular bronchiole" EXACT [FMA:7410]
|synonym="bronchiolus" RELATED [BTO:0002375];;"lobular bronchiole" EXACT [FMA:7410]
|comment=
|comment=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002048;;UBERON:0007196
|part_of=UBERON:0002048;;UBERON:0007196;;UBERON:0010368
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Latest revision as of 13:31, 27 June 2012

Name:bronchiole
Definition:"the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole]
Xrefs:
links:

BTO:0002375
EHDAA:8171
EHDAA:8183
EHDAA:8199
EHDAA:8221
FMA:7410
[ Alveoli_diagram.png Alveoli_diagram.png]
[ 200px-Alveoli_diagram.png 200px-Alveoli_diagram.png]
MA:0000422
ncithesaurus:Bronchiole
OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA
SCTID:278982001

VHOG:0000675
Synonyms: "bronchiolus" RELATED [BTO:0002375]
"lobular bronchiole" EXACT [FMA:7410]
Alt_id: UBERON:FMA_7410-MA_0000422
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000072(segment of respiratory tract)
part_of:UBERON:0002048(lung),UBERON:0007196(tracheobronchial tree),UBERON:0010368(pulmonary lobule)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
  • 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
  • 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002186 (bronchiole), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_8fc86289a9365c909ebaae19670ac0a6p14@DNMBP
1.55e-98FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_8fc86289a9365c909ebaae19670ac0a6p1@ENST00000430271
1.55e-98FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_8fc86289a9365c909ebaae19670ac0a6p12@CPXM1
1.55e-98FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_8fc86289a9365c909ebaae19670ac0a6p13@DNMBP
1.55e-98FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_8fc86289a9365c909ebaae19670ac0a6p9@CPXM1
1.55e-98FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_8fc86289a9365c909ebaae19670ac0a6p@chr14:36536932..36536937, -
1.55e-98FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_8fc86289a9365c909ebaae19670ac0a6p1@ENST00000418699, p1@ENST00000432330
1.55e-98FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_8fc86289a9365c909ebaae19670ac0a6p@chr17:63511856..63511858, -
1.55e-98FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_8fc86289a9365c909ebaae19670ac0a6p@chr17:13574618..13574636, -
1.55e-98FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_8fc86289a9365c909ebaae19670ac0a6p16@CPXM1
1.55e-98FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_8fc86289a9365c909ebaae19670ac0a6p12@CLEC16A
1.55e-98FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_8fc86289a9365c909ebaae19670ac0a6p@chr3:87647430..87647437, -
1.55e-98FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_8fc86289a9365c909ebaae19670ac0a6p13@CPXM1
1.55e-98FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_8fc86289a9365c909ebaae19670ac0a6p1@SSX5
1.55e-98FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_8fc86289a9365c909ebaae19670ac0a6p14@DNMBP
1.55e-98FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_8fc86289a9365c909ebaae19670ac0a6p1@ENST00000418699, p1@ENST00000432330
1.55e-98FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_8fc86289a9365c909ebaae19670ac0a6p1@ENST00000430271
1.55e-98FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_8fc86289a9365c909ebaae19670ac0a6p12@CPXM1
1.55e-98FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_8fc86289a9365c909ebaae19670ac0a6p13@DNMBP
1.55e-98FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_8fc86289a9365c909ebaae19670ac0a6p9@CPXM1
1.55e-98FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_8fc86289a9365c909ebaae19670ac0a6p@chr17:63511856..63511858, -
1.55e-98FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_8fc86289a9365c909ebaae19670ac0a6p@chr17:13574618..13574636, -
1.55e-98FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_8fc86289a9365c909ebaae19670ac0a6p16@CPXM1
1.55e-98FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_8fc86289a9365c909ebaae19670ac0a6p@chr3:87647430..87647437, -
1.55e-98FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_8fc86289a9365c909ebaae19670ac0a6p1@SSX5
1.55e-98FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_8fc86289a9365c909ebaae19670ac0a6p@chr14:36536932..36536937, -
1.55e-98FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_8fc86289a9365c909ebaae19670ac0a6p12@CLEC16A
1.55e-98FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_8fc86289a9365c909ebaae19670ac0a6p13@CPXM1
3.96e-66FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_0a4f469b4a940960cfb6e4c83a863600p@chr2:191696381..191696384, -
3.96e-66FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_0a4f469b4a940960cfb6e4c83a863600p@chr2:191696381..191696384, -
2.74e-50FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_e9b9dff45c9c6e71b878d1a92b0a912cp30@PDP1
2.74e-50FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr4:169956294..169956301, -
2.74e-50FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_e9b9dff45c9c6e71b878d1a92b0a912cp11@DNMBP
2.74e-50FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_e9b9dff45c9c6e71b878d1a92b0a912cp7@DNMBP
2.74e-50FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr11:106266838..106266843, +
2.74e-50FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr11:41809203..41809208, -
2.74e-50FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_e9b9dff45c9c6e71b878d1a92b0a912cp30@NELF
2.74e-50FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr8:122157279..122157284, -
2.74e-50FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_e9b9dff45c9c6e71b878d1a92b0a912cp3@FMR1NB
2.74e-50FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr11:104005546..104005596, -
2.74e-50FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr4:169956294..169956301, -
2.74e-50FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr9:103785643..103785646, -
2.74e-50FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_e9b9dff45c9c6e71b878d1a92b0a912cp11@DNMBP
2.74e-50FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_e9b9dff45c9c6e71b878d1a92b0a912cp7@DNMBP
2.74e-50FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr11:106266838..106266843, +
2.74e-50FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr11:41809203..41809208, -
2.74e-50FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_e9b9dff45c9c6e71b878d1a92b0a912cp30@PDP1
2.74e-50FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr9:103785643..103785646, -
2.74e-50FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr8:122157279..122157284, -
2.74e-50FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_e9b9dff45c9c6e71b878d1a92b0a912cp3@FMR1NB
2.74e-50FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_e9b9dff45c9c6e71b878d1a92b0a912cp30@NELF
2.74e-50FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_e9b9dff45c9c6e71b878d1a92b0a912cp@chr11:104005546..104005596, -
4.52e-50FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_732659288d1d69bd3277cd963347a12fp@chr17:63533845..63533851, -
4.52e-50FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_732659288d1d69bd3277cd963347a12fp34@NELF
4.52e-50FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_732659288d1d69bd3277cd963347a12fp@chr3:139035972..139036016, -
4.52e-50FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_732659288d1d69bd3277cd963347a12fp@chr6:141743015..141743025, +
4.52e-50FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_732659288d1d69bd3277cd963347a12fp@chr6:45399294..45399301, +
4.52e-50FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_732659288d1d69bd3277cd963347a12fp@chr6:45405393..45405412, +
4.52e-50FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_732659288d1d69bd3277cd963347a12fp@chr6:169691363..169691375, -
4.52e-50FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_732659288d1d69bd3277cd963347a12fp12@AADAT
4.52e-50FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_732659288d1d69bd3277cd963347a12fp@chr15:55806847..55806854, -
4.52e-50FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_732659288d1d69bd3277cd963347a12fp@chr6:45399533..45399540, +
4.52e-50FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_732659288d1d69bd3277cd963347a12fp5@C20orf141
4.52e-50FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_732659288d1d69bd3277cd963347a12fp@chr6:45405332..45405343, +
4.52e-50FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_732659288d1d69bd3277cd963347a12fp@chr6:45399245..45399258, +
4.52e-50FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_732659288d1d69bd3277cd963347a12fp@chr6:141743015..141743025, +
4.52e-50FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_732659288d1d69bd3277cd963347a12fp@chr6:46985426..46985427, -
4.52e-50FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_732659288d1d69bd3277cd963347a12fp@chr1:93054640..93054674, -
4.52e-50FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_732659288d1d69bd3277cd963347a12fp6@INSIG2
4.52e-50FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_732659288d1d69bd3277cd963347a12fp36@NELF
4.52e-50FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_732659288d1d69bd3277cd963347a12fp@chr6:169691363..169691375, -
4.52e-50FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_732659288d1d69bd3277cd963347a12fp@chr12:65386452..65386492, -
4.52e-50FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_732659288d1d69bd3277cd963347a12fp@chr17:63533845..63533851, -
4.52e-50FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_732659288d1d69bd3277cd963347a12fp@chr3:139035972..139036016, -
4.52e-50FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_732659288d1d69bd3277cd963347a12fp@chr6:45399533..45399540, +
4.52e-50FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_732659288d1d69bd3277cd963347a12fp@chr6:45405393..45405412, +
4.52e-50FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_732659288d1d69bd3277cd963347a12fp@chr6:45399263..45399274, +
4.52e-50FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_732659288d1d69bd3277cd963347a12fp@chr1:119837700..119837705, +
4.52e-50FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_732659288d1d69bd3277cd963347a12fp@chr6:45399245..45399258, +
4.52e-50FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_732659288d1d69bd3277cd963347a12fp12@AADAT
4.52e-50FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_732659288d1d69bd3277cd963347a12fp@chr15:55806847..55806854, -
4.52e-50FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_732659288d1d69bd3277cd963347a12fp34@NELF
4.52e-50FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_732659288d1d69bd3277cd963347a12fp6@INSIG2
4.52e-50FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_732659288d1d69bd3277cd963347a12fp36@NELF
4.52e-50FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_732659288d1d69bd3277cd963347a12fp5@C20orf141
4.52e-50FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_732659288d1d69bd3277cd963347a12fp@chr12:65386452..65386492, -
4.52e-50FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_732659288d1d69bd3277cd963347a12fp@chr6:45399294..45399301, +
4.52e-50FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_732659288d1d69bd3277cd963347a12fp@chr6:45399263..45399274, +
4.52e-50FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_732659288d1d69bd3277cd963347a12fp@chr6:45405332..45405343, +
4.52e-50FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_732659288d1d69bd3277cd963347a12fp@chr6:46985426..46985427, -
4.52e-50FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_732659288d1d69bd3277cd963347a12fp@chr1:93054640..93054674, -
4.52e-50FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_732659288d1d69bd3277cd963347a12fp@chr1:119837700..119837705, +
4.0e-45FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_845ad0ec7f0990b002df16ced783738bp1@BC018659
4.0e-45FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_845ad0ec7f0990b002df16ced783738bp1@BC018659
1.1e-40FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_7e1ea77f143ea439d91d397854355a64p@chr14:29047235..29047244, +
1.1e-40FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_7e1ea77f143ea439d91d397854355a64p@chr14:29047235..29047244, +
3.61e-34FFCP PHASE2:Hg19::chr8:144260966..144260967,-#_ecbc8ade8c37604a268d3f3decfb16b6p@chr8:144260966..144260967, -
3.61e-34FFCP PHASE2:Hg19::chr1:87994589..87994604,-#_ecbc8ade8c37604a268d3f3decfb16b6p@chr1:87994589..87994604, -
3.61e-34FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_ecbc8ade8c37604a268d3f3decfb16b6p@chr13:70823810..70823813, +
3.61e-34FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_ecbc8ade8c37604a268d3f3decfb16b6p@chr6:73786620..73786627, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002186&oldid=1837561"