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|def="Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium." [ZFIN:curator]
|def="Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium." [ZFIN:curator]
|xref=EHDAA2:0001306;;EMAPA:16677;;TAO:0000064;;VHOG:0000492;;ZFA:0000064
|xref=EHDAA2:0001306;;EMAPA:16677;;TAO:0000064;;VHOG:0000492;;ZFA:0000064
|is_a=UBERON:0006598
|is_a=UBERON:0006598;;UBERON:0010312
|synonym="optic cup outer layer" EXACT [EHDAA2:0001306];;"outer layer optic cup" EXACT [ZFA:0000064];;"presumptive pigmented epithelia" EXACT PLURAL [ZFA:0000064]
|synonym="optic cup outer layer" EXACT [EHDAA2:0001306];;"outer layer optic cup" EXACT [ZFA:0000064];;"presumptive pigmented epithelia" EXACT PLURAL [ZFA:0000064]
|comment=
|comment=
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|obo_creation_date=
|obo_creation_date=
|subset=vertebrate_core
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=

Latest revision as of 13:40, 27 June 2012

Name:presumptive retinal pigmented epithelium
Definition:"Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0001306
EMAPA:16677
TAO:0000064
VHOG:0000492

ZFA:0000064
Synonyms: "optic cup outer layer" EXACT [EHDAA2:0001306]
"outer layer optic cup" EXACT [ZFA:0000064]
"presumptive pigmented epithelia" EXACT PLURAL [ZFA:0000064]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006598(presumptive structure),UBERON:0010312(immature eye)
part_of:UBERON:0003072(optic cup)



Children

develops from:UBERON:0001782 (pigmented layer of retina)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005424 (presumptive retinal pigmented epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_c5e0e058c7df9c285d4dbca76b9d100fp@chr1:147150847..147150854, -
2.79e-195FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_c5e0e058c7df9c285d4dbca76b9d100fp@chr1:147150847..147150854, -
3.27e-147FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_394af110e10dd7c64fb14d6e4105d2efp2@SERPINE3
3.27e-147FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_394af110e10dd7c64fb14d6e4105d2efp2@SERPINE3
5.41e-147FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_6f45c29b80e032dccb48530b60d64054p@chr13:99135322..99135327, -
5.41e-147FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_6f45c29b80e032dccb48530b60d64054p@chr13:99135322..99135327, -
8.98e-131FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_6b16c79a6541defd0f41ae008aeba1dep@chr13:51913893..51913901, +
8.98e-131FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_6b16c79a6541defd0f41ae008aeba1dep@chr13:51913893..51913901, +
3.48e-118FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_b0e2d943855f7b4c5650fe539e6b0575p@chr11:109990513..109990520, -
3.48e-118FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_b0e2d943855f7b4c5650fe539e6b0575p@chr11:109990513..109990520, -
1.16e-117FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_e0eeb11eb00586cf8912166016ef8f95p@chr5:70308745..70308754, -
1.16e-117FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_e0eeb11eb00586cf8912166016ef8f95p@chr5:70308745..70308754, -
7.95e-99FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_fdeed0e1e1b2cd4e3ac69e12bdbc6fb6p2@C11orf9
7.95e-99FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_fdeed0e1e1b2cd4e3ac69e12bdbc6fb6p2@C11orf9
2.17e-98FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_0f534057025fc0fc12cbe53acbcc7fccp@chr2:235591306..235591328, +
2.17e-98FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_0f534057025fc0fc12cbe53acbcc7fccp@chr2:235591306..235591328, +
6.24e-88FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_2cae0c1b64d93308a421745152e0f280p9@C11orf9
6.24e-88FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_2cae0c1b64d93308a421745152e0f280p9@C11orf9
9.74e-88FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_74cfd4904953cc0d4e91a04c55f22303p11@CRISPLD1
9.74e-88FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_74cfd4904953cc0d4e91a04c55f22303p11@CRISPLD1
1.52e-87FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_ec140ca29e5218167ecb67587155d7b3p5@ENST00000437916
1.52e-87FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_ec140ca29e5218167ecb67587155d7b3p5@ENST00000437916
2.28e-85FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_d13e8192292d46959024b488ba95e0c5p1@SERPINE3
2.28e-85FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_d13e8192292d46959024b488ba95e0c5p1@SERPINE3
1.01e-74FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_76bb02458a8a5e891d50f9fa0e8b7b53p@chr3:69928426..69928436, +
1.01e-74FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_76bb02458a8a5e891d50f9fa0e8b7b53p@chr3:69928426..69928436, +
1.29e-74FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_bc2163a8a4d8d4ef27f90629d3c6aee1p@chr3:69928404..69928418, +
1.29e-74FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_bc2163a8a4d8d4ef27f90629d3c6aee1p@chr3:69928404..69928418, +
2.14e-74FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_1ae998c26a843c8244cbdef9b7c4b08cp@chr6:168250971..168250985, +
2.14e-74FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_1ae998c26a843c8244cbdef9b7c4b08cp@chr6:168250971..168250985, +
2.14e-74FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_1ae998c26a843c8244cbdef9b7c4b08cp@chr22:37633537..37633546, -
2.14e-74FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_1ae998c26a843c8244cbdef9b7c4b08cp@chr22:37633537..37633546, -
3.54e-74FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_8f1bd94f138f49f7b916f8057ffa0819p@chr1:43533230..43533270, +
3.54e-74FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_8f1bd94f138f49f7b916f8057ffa0819p@chr1:43533230..43533270, +
1.54e-66FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_98215c70f62e8dbe5003681510498f79p5@CLIC6
1.54e-66FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_98215c70f62e8dbe5003681510498f79p5@CLIC6
2.39e-66FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_eeb7752c39158ae9c9ef257bbc389726p@chr13:51913997..51914020, +
2.39e-66FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_eeb7752c39158ae9c9ef257bbc389726p@chr13:51913997..51914020, +
6.53e-66FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_bbaa571ee15c44ff485c01c639dd335fp@chr6:168251000..168251007, +
6.53e-66FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_bbaa571ee15c44ff485c01c639dd335fp@chr6:168251000..168251007, +
2.98e-60FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_71ca088ab62a583893cbd589605b5372p@chr13:99135278..99135298, -
2.98e-60FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_71ca088ab62a583893cbd589605b5372p@chr13:99135278..99135298, -
5.01e-55FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_9963275bbf324919198c7e47423f1a54p@chr3:69928371..69928385, +
5.01e-55FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_9963275bbf324919198c7e47423f1a54p@chr3:69928371..69928385, +
7.24e-55FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_d76fb30429ea892c84682fc09bff7934p@chr14:87636652..87636657, -
7.24e-55FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_d76fb30429ea892c84682fc09bff7934p@chr14:87636652..87636657, -
1.68e-53FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_18b3fc5f85732e8815015b6680c66686p@chr2:235591286..235591298, +
1.68e-53FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_18b3fc5f85732e8815015b6680c66686p@chr2:235591286..235591298, +
6.39e-53FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_db32d38115a3fb8975e630a31ada6dcbp@chr16:84228961..84228982, +
6.39e-53FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_db32d38115a3fb8975e630a31ada6dcbp@chr16:84228961..84228982, +
6.39e-53FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_db32d38115a3fb8975e630a31ada6dcbp5@MFRP, p6@C1QTNF5
6.39e-53FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_db32d38115a3fb8975e630a31ada6dcbp5@MFRP, p6@C1QTNF5
9.6e-51FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_c381c1805a2428da0cba0258a15b72b7p3@CLIC6
9.6e-51FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_c381c1805a2428da0cba0258a15b72b7p3@CLIC6
1.89e-50FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_1e35161d85a1bd271cca6e6d41024fd9p7@GDPD5
1.89e-50FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_1e35161d85a1bd271cca6e6d41024fd9p7@GDPD5
7.24e-50FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_32184d1e84f5f82dcb862615e868c418p4@MFRP, p5@C1QTNF5
7.24e-50FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_32184d1e84f5f82dcb862615e868c418p4@MFRP, p5@C1QTNF5
6.25e-45FFCP PHASE2:Hg19::chr17:932596..932605,-#_e5b921c2c0ff43c5600842d5ef4bed7dp@chr17:932596..932605, -
6.25e-45FFCP PHASE1:Hg19::chr17:932596..932605,-#_e5b921c2c0ff43c5600842d5ef4bed7dp@chr17:932596..932605, -
1.22e-44FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_a4807607632376655baf154dda95a906p5@CYP24A1
1.22e-44FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_a4807607632376655baf154dda95a906p5@CYP24A1
1.22e-44FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_a4807607632376655baf154dda95a906p1@SLC16A8
1.22e-44FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_a4807607632376655baf154dda95a906p1@SLC16A8
1.22e-44FFCP PHASE2:Hg19::chr17:932340..932343,-#_a4807607632376655baf154dda95a906p@chr17:932340..932343, -
1.22e-44FFCP PHASE1:Hg19::chr17:932340..932343,-#_a4807607632376655baf154dda95a906p@chr17:932340..932343, -
2.38e-44FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_19b781a5729e6536e4334c3309517beep@chr3:98672197..98672201, +
2.38e-44FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_19b781a5729e6536e4334c3309517beep@chr3:98672197..98672201, +
2.97e-44FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_52bee44938e75f942e8f27993b1c755cp@chr3:183733654..183733680, -
2.97e-44FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_52bee44938e75f942e8f27993b1c755cp1@ENST00000437461
2.97e-44FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_52bee44938e75f942e8f27993b1c755cp@chr3:183733654..183733680, -
2.97e-44FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_52bee44938e75f942e8f27993b1c755cp1@ENST00000437461
4.49e-44FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_30efa866a35b22a19def807808b948a7p@chr9:140088882..140088898, -
4.49e-44FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_30efa866a35b22a19def807808b948a7p@chr9:140088882..140088898, -
1.24e-43FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_56779ffab5267402f57a8a95b54aeb7ep1@LOC100505967
1.24e-43FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_56779ffab5267402f57a8a95b54aeb7ep1@LOC100505967
2.95e-43FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_4fd2826b62d82e789dc6611bbe2b7b75p11@SIX3
2.95e-43FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_4fd2826b62d82e789dc6611bbe2b7b75p11@SIX3
4.55e-43FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_2afa61e63e4e140e44259877ddbe295ep2@SLC45A2
4.55e-43FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_2afa61e63e4e140e44259877ddbe295ep2@SLC45A2
3.86e-41FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_933528064c2e04575897a05c0b6b6219p@chr16:68301840..68301845, +
3.86e-41FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_933528064c2e04575897a05c0b6b6219p@chr16:68301840..68301845, +
9.96e-41FFCP PHASE2:Hg19::chr19:49140255..49140268,-#_5cdc1f326b0ed7dc99a4360f5777da7ap9@DBP
9.96e-41FFCP PHASE1:Hg19::chr19:49140255..49140268,-#_5cdc1f326b0ed7dc99a4360f5777da7ap9@DBP
1.31e-40FFCP PHASE2:Hg19::chr12:52579447..52579461,-#_5579853df116006508859188a06ae4f1p6@KRT80
1.31e-40FFCP PHASE1:Hg19::chr12:52579447..52579461,-#_5579853df116006508859188a06ae4f1p6@KRT80
1.49e-40FFCP PHASE2:Hg19::chr4:23886471..23886501,-#_58aaa7c9663e8e020fbd839c387852c0p5@PPARGC1A
1.49e-40FFCP PHASE1:Hg19::chr4:23886471..23886501,-#_58aaa7c9663e8e020fbd839c387852c0p5@PPARGC1A
1.71e-40FFCP PHASE1:Hg19::chr11:119217318..119217346,-#_d34d79f1bd0c6c5f5b3ab6991e020624p2@MFRP
1.71e-40FFCP PHASE2:Hg19::chr11:119217318..119217346,-#_d34d79f1bd0c6c5f5b3ab6991e020624p2@MFRP
1.96e-40FFCP PHASE2:Hg19::chr11:119217405..119217420,-#_7f81ff304f0d9f098d3403d885309b1ep3@C1QTNF5, p3@MFRP
1.96e-40FFCP PHASE1:Hg19::chr11:119217405..119217420,-#_7f81ff304f0d9f098d3403d885309b1ep3@C1QTNF5, p3@MFRP
2.93e-40FFCP PHASE2:Hg19::chr8:144905532..144905541,-#_cf29d5a33b10c31478571ddee9cd373dp6@PUF60
2.93e-40FFCP PHASE1:Hg19::chr8:144905532..144905541,-#_cf29d5a33b10c31478571ddee9cd373dp6@PUF60
3.83e-40FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_4fd476f320e1ac413db7f3ecd9e43b46p1@ENST00000432125
3.83e-40FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_4fd476f320e1ac413db7f3ecd9e43b46p1@ENST00000432125
6.54e-40FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_30cd7a57624e6b861aa0d2dd734010d3p6@TRPM3
6.54e-40FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_30cd7a57624e6b861aa0d2dd734010d3p6@TRPM3
1.11e-38FFCP PHASE2:Hg19::chr11:67776077..67776088,+#_7e6fe289441478057322ebc29f97da06p5@ALDH3B1
1.11e-38FFCP PHASE1:Hg19::chr11:67776077..67776088,+#_7e6fe289441478057322ebc29f97da06p5@ALDH3B1

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