UBERON:0009663: Difference between revisions
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|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001893 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:44, 27 June 2012
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002308(nucleus of brain),UBERON:0002791(regional part of telencephalon) |
|---|---|
| part_of: | UBERON:0001893(telencephalon) |
Children
| is a: | UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen),UBERON:0001875 (globus pallidus),UBERON:0001882 (nucleus accumbens) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
... further results Mouse (Mus musculus)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009663 (telencephalic nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.16e-143 | FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_70d11826affce57d1750faf67503ee0c | p@chr2:7112752..7112770, + |
| 1.16e-143 | FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_70d11826affce57d1750faf67503ee0c | p@chr2:7112752..7112770, + |
| 1.48e-143 | FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_32a39a406d0fc3f6234d3b3b72ff4cc8 | p3@ENST00000413244 |
| 1.48e-143 | FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_32a39a406d0fc3f6234d3b3b72ff4cc8 | p3@ENST00000413244 |
| 6.94e-140 | FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_88e30d0a572f0d788f6b205da0ae5fdb | p@chr2:3853961..3853984, + |
| 6.94e-140 | FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_88e30d0a572f0d788f6b205da0ae5fdb | p@chr2:3853961..3853984, + |
| 6.94e-140 | FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_88e30d0a572f0d788f6b205da0ae5fdb | p@chr17:19390211..19390223, + |
| 6.94e-140 | FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_88e30d0a572f0d788f6b205da0ae5fdb | p@chr15:35546024..35546035, - |
| 6.94e-140 | FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_88e30d0a572f0d788f6b205da0ae5fdb | p@chr17:19390211..19390223, + |
| 6.94e-140 | FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_88e30d0a572f0d788f6b205da0ae5fdb | p@chr15:35546024..35546035, - |
| 4.37e-126 | FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_bdb2ce3aac6069e16f8e4f0b9debdcd2 | p10@PTPN5 |
| 4.37e-126 | FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_bdb2ce3aac6069e16f8e4f0b9debdcd2 | p10@PTPN5 |
| 7.13e-117 | FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_648d284b1f0a5baff84455b97ed87e50 | p@chr10:97261901..97261919, - |
| 7.13e-117 | FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_648d284b1f0a5baff84455b97ed87e50 | p@chr10:97261901..97261919, - |
| 7.13e-117 | FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_648d284b1f0a5baff84455b97ed87e50 | p@chr11:26497871..26497889, + |
| 7.13e-117 | FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_648d284b1f0a5baff84455b97ed87e50 | p@chr11:26497871..26497889, + |
| 9.06e-117 | FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_75b66c4487ec6f82b20bcb4526adc9e1 | p1@ENST00000421878 |
| 9.06e-117 | FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_75b66c4487ec6f82b20bcb4526adc9e1 | p@chr19:1236637..1236645, - |
| 9.06e-117 | FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_75b66c4487ec6f82b20bcb4526adc9e1 | p8@ANO3 |
| 9.06e-117 | FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_75b66c4487ec6f82b20bcb4526adc9e1 | p@chr19:1236637..1236645, - |
| 9.06e-117 | FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_75b66c4487ec6f82b20bcb4526adc9e1 | p8@ANO3 |
| 9.06e-117 | FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_75b66c4487ec6f82b20bcb4526adc9e1 | p1@ENST00000421878 |
| 9.06e-117 | FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_75b66c4487ec6f82b20bcb4526adc9e1 | p14@ADORA2A |
| 9.06e-117 | FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_75b66c4487ec6f82b20bcb4526adc9e1 | p14@ADORA2A |
| 9.29e-115 | FFCP PHASE2:Hg19::chr11:67174819..67174825,-#_d2d0949d35e1fa79821019b078692ff7 | p14@PPP1CA |
| 9.29e-115 | FFCP PHASE1:Hg19::chr11:67174819..67174825,-#_d2d0949d35e1fa79821019b078692ff7 | p14@PPP1CA |
| 1.7e-112 | FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_08f301e86153625ba747e9f6fd91f5ca | p@chr17:19390234..19390251, + |
| 1.7e-112 | FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_08f301e86153625ba747e9f6fd91f5ca | p@chr17:19390234..19390251, + |
| 2.06e-112 | FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_4bbb8714233933b6701a96333fecad31 | p28@ARPP21 |
| 2.06e-112 | FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_4bbb8714233933b6701a96333fecad31 | p28@ARPP21 |
| 2.5e-112 | FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_3afb0c76e0b3102ec15a6145b34e1b7e | p5@ANO3 |
| 2.5e-112 | FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_3afb0c76e0b3102ec15a6145b34e1b7e | p5@ANO3 |
| 2.5e-112 | FFCP PHASE1:Hg19::chr10:73313437..73313451,-#_3afb0c76e0b3102ec15a6145b34e1b7e | p@chr10:73313437..73313451, - |
| 2.5e-112 | FFCP PHASE2:Hg19::chr10:73313437..73313451,-#_3afb0c76e0b3102ec15a6145b34e1b7e | p@chr10:73313437..73313451, - |
| 3.03e-112 | FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_a502db9ad3c07a4e6f324ce371e379d4 | p@chr3:16851273..16851310, + |
| 3.03e-112 | FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_a502db9ad3c07a4e6f324ce371e379d4 | p@chr3:16851273..16851310, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_beedc30f66ad4d0f0590139e260795cc | p20@WIPF3 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_beedc30f66ad4d0f0590139e260795cc | p@chr7:22382758..22382765, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_beedc30f66ad4d0f0590139e260795cc | p@chr1:31352916..31352926, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_beedc30f66ad4d0f0590139e260795cc | p@chr18:47967428..47967437, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_beedc30f66ad4d0f0590139e260795cc | p@chr12:6031299..6031315, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_beedc30f66ad4d0f0590139e260795cc | p@chr14:78638610..78638621, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_beedc30f66ad4d0f0590139e260795cc | p@chr13:112726433..112726446, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_beedc30f66ad4d0f0590139e260795cc | p1@GNRH1 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_beedc30f66ad4d0f0590139e260795cc | p@chr13:112726433..112726446, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_beedc30f66ad4d0f0590139e260795cc | p@chr14:78638610..78638621, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_beedc30f66ad4d0f0590139e260795cc | p@chr18:47967428..47967437, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_beedc30f66ad4d0f0590139e260795cc | p@chr7:22382758..22382765, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_beedc30f66ad4d0f0590139e260795cc | p@chr2:152828264..152828299, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_beedc30f66ad4d0f0590139e260795cc | p@chr2:152828264..152828299, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_beedc30f66ad4d0f0590139e260795cc | p@chr8:19799565..19799589, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_beedc30f66ad4d0f0590139e260795cc | p@chr12:6031299..6031315, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_beedc30f66ad4d0f0590139e260795cc | p@chr1:31352916..31352926, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_beedc30f66ad4d0f0590139e260795cc | p@chr15:35546154..35546174, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_beedc30f66ad4d0f0590139e260795cc | p1@GNRH1 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_beedc30f66ad4d0f0590139e260795cc | p@chr15:35546154..35546174, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_beedc30f66ad4d0f0590139e260795cc | p@chr8:19799565..19799589, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_beedc30f66ad4d0f0590139e260795cc | p20@WIPF3 |
| 3.67e-112 | FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_b1ff59482093a2932f0bae38fa79f852 | p@chr7:67899920..67899958, - |
| 3.67e-112 | FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_b1ff59482093a2932f0bae38fa79f852 | p@chr7:67899920..67899958, - |
| 1.8e-101 | FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_f4d92bff7b40b00623adb7b40ae8ba43 | p@chr6:166076645..166076657, - |
| 1.8e-101 | FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_f4d92bff7b40b00623adb7b40ae8ba43 | p@chr6:166076645..166076657, - |
| 2.15e-101 | FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_d318d46b5bc40800422c501c48942ffd | p2@ENST00000413244 |
| 2.15e-101 | FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_d318d46b5bc40800422c501c48942ffd | p6@PTPN5 |
| 2.15e-101 | FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_d318d46b5bc40800422c501c48942ffd | p2@ENST00000413244 |
| 2.15e-101 | FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_d318d46b5bc40800422c501c48942ffd | p6@PTPN5 |
| 7.2e-101 | FFCP PHASE2:Hg19::chr21:43917191..43917207,-#_fff9402bf670254034b7fd1e882b068d | p@chr21:43917191..43917207, - |
| 7.2e-101 | FFCP PHASE1:Hg19::chr21:43917191..43917207,-#_fff9402bf670254034b7fd1e882b068d | p@chr21:43917191..43917207, - |
| 1.61e-100 | FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_51d6e7acb9f2039a9649b8877270cb52 | p@chr13:98995904..98995913, + |
| 1.61e-100 | FFCP PHASE2:Hg19::chr6:80472250..80472261,+#_51d6e7acb9f2039a9649b8877270cb52 | p@chr6:80472250..80472261, + |
| 1.61e-100 | FFCP PHASE1:Hg19::chr6:80472250..80472261,+#_51d6e7acb9f2039a9649b8877270cb52 | p@chr6:80472250..80472261, + |
| 1.61e-100 | FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_51d6e7acb9f2039a9649b8877270cb52 | p@chr13:98995904..98995913, + |
| 2.42e-100 | FFCP PHASE1:Hg19::chr1:101003738..101003747,+#_d5652d1f89e052c8570034af0fe4e8a4 | p9@GPR88 |
| 2.42e-100 | FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_d5652d1f89e052c8570034af0fe4e8a4 | p@chr11:80886203..80886231, + |
| 2.42e-100 | FFCP PHASE2:Hg19::chr1:101003738..101003747,+#_d5652d1f89e052c8570034af0fe4e8a4 | p9@GPR88 |
| 2.42e-100 | FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_d5652d1f89e052c8570034af0fe4e8a4 | p@chr11:80886203..80886231, + |
| 2.97e-100 | FFCP PHASE2:Hg19::chr20:9495125..9495132,+#_6793039df0afe31068629b105be9c2ad | p17@LAMP5 |
| 2.97e-100 | FFCP PHASE1:Hg19::chr20:9495125..9495132,+#_6793039df0afe31068629b105be9c2ad | p17@LAMP5 |
| 2.97e-100 | FFCP PHASE1:Hg19::chr5:79866189..79866202,+#_6793039df0afe31068629b105be9c2ad | p@chr5:79866189..79866202, + |
| 2.97e-100 | FFCP PHASE2:Hg19::chr5:79866189..79866202,+#_6793039df0afe31068629b105be9c2ad | p@chr5:79866189..79866202, + |
| 1.9e-92 | FFCP PHASE2:Hg19::chr12:122181551..122181562,+#_695779902370a4aa9595e37b90e271c5 | p@chr12:122181551..122181562, + |
| 1.9e-92 | FFCP PHASE1:Hg19::chr12:122181551..122181562,+#_695779902370a4aa9595e37b90e271c5 | p@chr12:122181551..122181562, + |
| 2.6e-92 | FFCP PHASE1:Hg19::chr11:120690389..120690422,+#_abe1aadbb76acfd5204ce11f55962564 | p@chr11:120690389..120690422, + |
| 2.6e-92 | FFCP PHASE2:Hg19::chr11:120690389..120690422,+#_abe1aadbb76acfd5204ce11f55962564 | p@chr11:120690389..120690422, + |
| 3.52e-90 | FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_f681fbcd52d92680e0eb8d03b86c2279 | p@chr10:97261874..97261887, - |
| 3.52e-90 | FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_f681fbcd52d92680e0eb8d03b86c2279 | p2@BC051739 |
| 3.52e-90 | FFCP PHASE2:Hg19::chr12:11652913..11652927,+#_f681fbcd52d92680e0eb8d03b86c2279 | p@chr12:11652913..11652927, + |
| 3.52e-90 | FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_f681fbcd52d92680e0eb8d03b86c2279 | p@chr10:97261874..97261887, - |
| 3.52e-90 | FFCP PHASE1:Hg19::chr12:11652913..11652927,+#_f681fbcd52d92680e0eb8d03b86c2279 | p@chr12:11652913..11652927, + |
| 3.52e-90 | FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_f681fbcd52d92680e0eb8d03b86c2279 | p@chr3:57807798..57807809, + |
| 3.52e-90 | FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_f681fbcd52d92680e0eb8d03b86c2279 | p@chr3:57807798..57807809, + |
| 3.52e-90 | FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_f681fbcd52d92680e0eb8d03b86c2279 | p@chr20:9496091..9496106, + |
| 3.52e-90 | FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_f681fbcd52d92680e0eb8d03b86c2279 | p@chr20:9496091..9496106, + |
| 3.52e-90 | FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_f681fbcd52d92680e0eb8d03b86c2279 | p2@BC051739 |
| 4.43e-90 | FFCP PHASE2:Hg19::chr11:130011708..130011717,+#_0d4816ff4a25165ab73791aacea77583 | p18@APLP2 |
| 4.43e-90 | FFCP PHASE1:Hg19::chr11:130011708..130011717,+#_0d4816ff4a25165ab73791aacea77583 | p18@APLP2 |
| 4.43e-90 | FFCP PHASE2:Hg19::chr6:145132414..145132428,+#_0d4816ff4a25165ab73791aacea77583 | p@chr6:145132414..145132428, + |
| 4.43e-90 | FFCP PHASE1:Hg19::chr6:145132414..145132428,+#_0d4816ff4a25165ab73791aacea77583 | p@chr6:145132414..145132428, + |
| 5.58e-90 | FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_d86bcf461b2b40dca5624b9880a88b42 | p23@KCNAB1 |
| 5.58e-90 | FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_d86bcf461b2b40dca5624b9880a88b42 | p23@KCNAB1 |
