Template:F5samples: Difference between revisions
From FANTOM5_SSTAR
Line 249: | Line 249: | ||
--> | --> | ||
{{#if: {{{ancestors_in_cell_lineage_facet}}} | | {{#if: {{{ancestors_in_cell_lineage_facet}}} | | ||
<div style="float:left;"> | <div width=20% style="float:left;"> | ||
<b>Cell type</b><br> | <b>CL: Cell type</b><br> | ||
{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}} | {{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | ||
</div> | </div> | ||
}} | }} | ||
{{#if: {{{ancestors_in_disease_facet}}} | | {{#if: {{{ancestors_in_disease_facet}}} | | ||
<div style="float:left;"> | <div width=20% style="float:left;"> | ||
<b>Disease</b><br> | <b>DOID: Disease</b><br> | ||
{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}} | {{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | ||
</div> | </div> | ||
}} | }} | ||
{{#if: {{{ancestors_in_anatomy_facet}}} | | {{#if: {{{ancestors_in_anatomy_facet}}} | | ||
<div style="float:left;"> | <div width=20% style="float:left;"> | ||
<b>Anatomy</b><br> | <b>UBERON: Anatomy</b><br> | ||
{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}} | {{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | ||
</div> | </div> | ||
}} | }} | ||
{{#if: {{{ancestors_in_ff_facet}}} | | {{#if: {{{ancestors_in_ff_facet}}} | | ||
<div style="float:left;"> | <div width=20% style="float:left;"> | ||
<b>FANTOM5</b><br> | <b>FF: FANTOM5</b><br> | ||
{{#arraymap:{{{ancestors_in_ff_facet}}}|,|$|{{#set:ancestors_in_ff_facet=$}} | {{#arraymap:{{{ancestors_in_ff_facet}}}|,|$|{{#set:ancestors_in_ff_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | ||
</div> | </div> | ||
}} | }} |
Revision as of 15:55, 6 July 2012
Name: | {{{name}}} |
---|---|
Species: | {{{sample_species}}} |
Genomic View: | zenbu , UCSC |
Details
Transcriptome profiling
hCAGE | {{{profile_hcage}}} |
---|---|
RNA-seq | {{{profile_rnaseq}}} |
smallRNA seq | {{{profile_srnaseq}}} |
nanoCAGEscan | {{{profile_cagescan}}} |
Sample info
strain | {{{sample_strain}}} |
---|---|
tissue | {{{sample_tissue}}} |
dev_stage | {{{sample_dev_stage}}} |
sex | {{{sample_sex}}} |
age | {{{sample_age}}} |
ethnicity | {{{sample_ethnicity}}} |
cell_type | {{{sample_cell_type}}} |
cell_line | {{{sample_cell_line}}} |
collaboration | {{{sample_collaboration}}} |
Experimental condition | {{{sample_experimental_condition}}} |
disease | {{{sample_disease}}} |
cell_lot | {{{sample_cell_lot}}} |
cell_catalog | {{{sample_cell_catalog}}} |
company | {{{sample_company}}} |
donor(cell lot) | {{{sample_donor(cell lot)}}} |
Note | {{{sample_note}}} |
RNA info
sample_id | {{{sample_id}}} |
---|---|
tube_id | {{{rna_tube_id}}} |
box | {{{rna_box}}} |
position | {{{rna_position}}} |
lot_number | {{{rna_lot_number}}} |
catalog_number | {{{rna_catalog_number}}} |
RIN | {{{rna_rin}}} |
OD260/230 | {{{rna_od260/230}}} |
OD260/280 | {{{rna_od260/280}}} |
sample_type | {{{rna_sample_type}}} |
extraction_protocol | {{{rna_extraction_protocol}}} |
weight_ug | {{{rna_weight_ug}}} |
concentration | {{{rna_concentration}}} |
Parent ontology
is_a relathionship
{{{is_a}}}
part_of relathionship
{{{part_of}}}
has_quality relathionship
{{{has_quality}}}
Ancestors in FF ontology
Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji
CL: Cell type
DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
UBERON: Anatomy
FF: FANTOM5