Template:F5samples: Difference between revisions
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== Ancestors in FF ontology == | == Ancestors in FF ontology (non-development) == | ||
{{#info: Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji}} | {{#info: Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji}} | ||
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{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | {{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | ||
</div> | </div> | ||
}} | }}{{#if: {{{ancestors_in_disease_facet}}} | | ||
{{#if: {{{ancestors_in_disease_facet}}} | | |||
<div style="width:25%; float:left;"> | <div style="width:25%; float:left;"> | ||
<b>DOID: Disease</b><br> | <b>DOID: Disease</b><br> | ||
{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | {{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | ||
</div> | </div> | ||
}} | }}{{#if: {{{ancestors_in_anatomy_facet}}} | | ||
{{#if: {{{ancestors_in_anatomy_facet}}} | | |||
<div style="width:25%; float:left;"> | <div style="width:25%; float:left;"> | ||
<b>UBERON: Anatomy</b><br> | <b>UBERON: Anatomy</b><br> | ||
{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | {{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | ||
</div> | </div> | ||
}} | }}{{#if: {{{ancestors_in_ff_facet}}} | | ||
{{#if: {{{ancestors_in_ff_facet}}} | | |||
<div style="width:25%; float:left;"> | <div style="width:25%; float:left;"> | ||
<b>FF: FANTOM5</b><br> | <b>FF: FANTOM5</b><br> | ||
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</div> | </div> | ||
}} | }} | ||
== Ancestors in FF ontology (development) == | |||
{{#info: Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji}} | |||
{{#arraymap:{{{ffid_belonging_in_development}}}|,|$|{{#ifexist:{{{ffid_belonging_in_development}}}|{{#set:ffid_belonging_in_development=$}}[[$|${{#show:$|?name}}]]}}|<br>}} | |||
[[Category:FF_Ontology]] | [[Category:FF_Ontology]] | ||
[[Category:FF_Samples]] | [[Category:FF_Samples]] |
Revision as of 18:09, 9 July 2012
Name: | {{{name}}} |
---|---|
Species: | {{{sample_species}}} |
Genomic View: | zenbu , UCSC |
Details
Transcriptome profiling
hCAGE | {{{profile_hcage}}} |
---|---|
RNA-seq | {{{profile_rnaseq}}} |
smallRNA seq | {{{profile_srnaseq}}} |
nanoCAGEscan | {{{profile_cagescan}}} |
Sample info
strain | {{{sample_strain}}} |
---|---|
tissue | {{{sample_tissue}}} |
dev_stage | {{{sample_dev_stage}}} |
sex | {{{sample_sex}}} |
age | {{{sample_age}}} |
ethnicity | {{{sample_ethnicity}}} |
cell_type | {{{sample_cell_type}}} |
cell_line | {{{sample_cell_line}}} |
collaboration | {{{sample_collaboration}}} |
Experimental condition | {{{sample_experimental_condition}}} |
disease | {{{sample_disease}}} |
cell_lot | {{{sample_cell_lot}}} |
cell_catalog | {{{sample_cell_catalog}}} |
company | {{{sample_company}}} |
donor(cell lot) | {{{sample_donor(cell lot)}}} |
Note | {{{sample_note}}} |
RNA info
sample_id | {{{sample_id}}} |
---|---|
tube_id | {{{rna_tube_id}}} |
box | {{{rna_box}}} |
position | {{{rna_position}}} |
lot_number | {{{rna_lot_number}}} |
catalog_number | {{{rna_catalog_number}}} |
RIN | {{{rna_rin}}} |
OD260/230 | {{{rna_od260/230}}} |
OD260/280 | {{{rna_od260/280}}} |
sample_type | {{{rna_sample_type}}} |
extraction_protocol | {{{rna_extraction_protocol}}} |
weight_ug | {{{rna_weight_ug}}} |
concentration | {{{rna_concentration}}} |
Parent ontology
is_a relathionship
{{{is_a}}}
part_of relathionship
{{{part_of}}}
has_quality relathionship
{{{has_quality}}}
Ancestors in FF ontology (non-development)
Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji
CL: Cell type
DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
UBERON: Anatomy
FF: FANTOM5
Ancestors in FF ontology (development)
Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji