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Cytoscape test4: Difference between revisions

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<!-- F5 Cytoscape App HTML -->
<!-- F5 Cytoscape App HTML -->
<div id="f5_cytoscapeweb">
<div id="f5_cytoscapeweb">
<div id="tabs_box">
<div id="panel1">
<div id="tabs">
<div id="cytoscapeweb"></div>
<ul>
<div id="legend"><b>LEGEND:</b> <span class="tf">TF <img src="/resource_browser/nwfiles/img/tf.png" /></span>, <span class="motif">MOTIF <img src="/resource_browser/nwfiles/img/motif.png" /></span>,
<li><a href="#style_panel">Layout</a></li>
<br /><span class="tf">MOTIF->TF <img src="/resource_browser/nwfiles/img/motif-tf.png" /></span>, <span class="motif">TF->MOTIF <img src="/resource_browser/nwfiles/img/tf-motif.png" /></div>
<li><a href="#filter_panel">Filter</a></li>
</div>
<li><a href="#export_panel">Export</a></li>
<div id="panel2">
<li><a href="#properties_panel_nodes">Nodes</a></li>
<div id="tabs">
<li><a href="#properties_panel_edges">Edges</a></li>
<ul>
<li><a href="#style_panel">Layout</a></li>
</ul>
<li><a href="#filter_panel">Filter</a></li>
<div id="style_panel">
<li><a href="#export_panel">Export</a></li>
<label class="style">Layout:</label>
<li><a href="#properties_panel_nodes">Nodes</a></li>
<select id="cyto_layout" class="ui-button ui-widget ui-state-default ui-corner-all ui-button-text-only">
<li><a href="#properties_panel_edges">Edges</a></li>
  <option value="Preset">Preset</option>
<li><a href="#compare_panel">Compare</a></li>
  <option value="ForceDirected" selected>Force Directed</option>
</ul>
  <option value="Circle">Circle</option>
<div id="style_panel">
  <option value="Radial">Radial</option>
<label class="style">Layout:</label>
  <option value="Tree">Tree</option>
<select id="cyto_layout" class="ui-button ui-widget ui-state-default ui-corner-all ui-button-text-only">
</select>
  <!-- option value="Preset">Preset</option -->
<button id="cyto_recalc">Recalculate</button>
  <option value="ForceDirected" selected>Force Directed</option>
<label class="style">Labels:</label>
  <option value="Circle">Circle</option>
<input type="checkbox" id="cyto_node_labels" checked> Nodes</td></tr>
  <option value="Radial">Radial</option>
<br /><input type="checkbox" id="cyto_edge_labels"> Edges</td></tr>
  <option value="Tree">Tree</option>
</div>
</select>
<div id="filter_panel">
<button id="cyto_recalc">Recalculate</button>
<div>
<label class="style">Labels:</label>
<label class="filter">Show edges:</label>
<div id="show_labels">
<div id="edge_type_filter">
<input type="checkbox" id="cyto_node_labels" checked> Nodes
<input type="checkbox" id="cyto_edges_binds_to" value="binds_to" checked>TF->MOTIF</input>
<br /><input type="checkbox" id="cyto_edge_labels"> Edges
<br /><input type="checkbox" id="cyto_edges_promotes" value="promotes" checked>Promoters</input>
</div>
</div>
</div>
<div id="z_filter" class="slider">Promoter Z-Score:</div>
<div id="filter_panel">
<div>
<label class="filter">Show edges:</label>
<div id="edge_type_filter">
<input type="checkbox" id="cyto_edges_binds_to" value="binds_to" checked>TF->MOTIF</input>
<br /><input type="checkbox" id="cyto_edges_promotes" value="promotes" checked>Promoters</input>
</div>
<div id="z_filter" class="slider">Promoter Z-Score filter:</div>


<p />
<p />
<!-- div id="degree_filter" class="slider">Motif degree:</div -->
<div id="degree_filter" class="slider">Motif degree filter:</div>
<div id="tf_indegree_filter" class="slider">TF indegree:</div>
<div id="tf_indegree_filter" class="slider">TF indegree filter:</div>
 
<div id="nodes_type_filter">
<div id="nodes_type_filter">
<label class="filter">TF outdegree:</label>
<label class="filter">TF outdegree filter:</label>
<input type="checkbox" id="cyto_nodes_tf_src" value="tf" checked>Source (Outdegree > 0)</input>
<input type="checkbox" id="cyto_nodes_tf_src" value="tf" checked>Source TF (Outdegree > 0)</input>
<br /><input type="checkbox" id="cyto_nodes_tf" value="tf" checked>Target (Outdegree = 0)</input>
<br /><input type="checkbox" id="cyto_nodes_tf" value="tf" checked>Target TF (Outdegree = 0)</input>
</div>
</div>
</div>
<div id="properties_panel_nodes" class="properties_panel scrollable">
<div>
<button id="btn_show_all_nodes" class="rt_btn">Show all nodes</button>
<button id="btn_show_select_nodes" class="rt_btn">Show only selected nodes</button>
<p /><table id="nodes_list" class="wikitable">
</table>
</div>
</div>
</div>
 
<div id="properties_panel_edges" class="properties_panel scrollable">
<div>
<button id="btn_show_all_edges" class="rt_btn">Show all edges</button>
<button id="btn_show_select_edges" class="rt_btn">Show only selected edges</button>
<p /><table id="edges_list" class="wikitable">
</table>
</div>
</div>
</div>
</div>
<div id="export_panel">
<div id="properties_panel_nodes" class="properties_panel scrollable">
<label class="export">Export Network:</label>
<div>
  <button id="btn_exportGraphml">graphml</button>
<button id="btn_show_all_nodes" class="rt_btn">Show all nodes</button>
  <button id="btn_exportXgmml">xgmml</button>
<button id="btn_show_select_nodes" class="rt_btn">Show only selected nodes</button>
  <button id="btn_exportSIF">sif</button>
<p /><table id="nodes_list" class="wikitable">
  <button id="btn_exportJSON">JSON</button>
</table>
<label class="export">Export Image:</label>
  <button id="btn_exportPDF">PDF</button>
  <button id="btn_exportPNG">PNG</button>
  <button id="btn_exportSVG">SVG</button>
</div>
</div>
</div>
<div id="compare_panel">
<div id="properties_panel_edges" class="properties_panel scrollable">
<br />A = <select id="sample_a">
<div>
<option value="CNhs10608.10000-101A1">CNhs10608.10000-101A1</option>
<button id="btn_show_all_edges" class="rt_btn">Show all edges</button>
<option value="CNhs10610.10002-101A5">CNhs10610.10002-101A5</option>
<button id="btn_show_select_edges" class="rt_btn">Show only selected edges</button>
<option value="CNhs10612.10007-101B4">CNhs10612.10007-101B4</option>
<p /><table id="edges_list" class="wikitable">
<option value="CNhs10615.10010-101C1">CNhs10615.10010-101C1</option>
</table>
<option value="CNhs10616.10011-101C2">CNhs10616.10011-101C2</option>
<option value="CNhs10617.10012-101C3">CNhs10617.10012-101C3</option>
<option value="CNhs10618.10013-101C4">CNhs10618.10013-101C4</option>
<option value="CNhs10619.10014-101C5">CNhs10619.10014-101C5</option>
<option value="CNhs10620.10015-101C6">CNhs10620.10015-101C6</option>
<option value="CNhs10621.10016-101C7">CNhs10621.10016-101C7</option>
<option value="CNhs10622.10017-101C8">CNhs10622.10017-101C8</option>
<option value="CNhs10624.10018-101C9">CNhs10624.10018-101C9</option>
<option value="CNhs10625.10019-101D1">CNhs10625.10019-101D1</option>
<option value="CNhs10626.10020-101D2">CNhs10626.10020-101D2</option>
<option value="CNhs10627.10021-101D3">CNhs10627.10021-101D3</option>
<option value="CNhs10628.10022-101D4">CNhs10628.10022-101D4</option>
<option value="CNhs10629.10023-101D5">CNhs10629.10023-101D5</option>
<option value="CNhs10630.10024-101D6">CNhs10630.10024-101D6</option>
<option value="CNhs10631.10025-101D7">CNhs10631.10025-101D7</option>
<option value="CNhs10632.10026-101D8">CNhs10632.10026-101D8</option>
<option value="CNhs10633.10027-101D9">CNhs10633.10027-101D9</option>
<option value="CNhs10634.10028-101E1">CNhs10634.10028-101E1</option>
<option value="CNhs10635.10029-101E2">CNhs10635.10029-101E2</option>
<option value="CNhs10636.10030-101E3">CNhs10636.10030-101E3</option>
<option value="CNhs10637.10031-101E4">CNhs10637.10031-101E4</option>
<option value="CNhs10638.10032-101E5">CNhs10638.10032-101E5</option>
<option value="CNhs10640.10033-101E6">CNhs10640.10033-101E6</option>
<option value="CNhs10641.10034-101E7">CNhs10641.10034-101E7</option>
<option value="CNhs10642.10035-101E8">CNhs10642.10035-101E8</option>
<option value="CNhs10643.10036-101E9">CNhs10643.10036-101E9</option>
<option value="CNhs10644.10037-101F1">CNhs10644.10037-101F1</option>
<option value="CNhs10645.10038-101F2">CNhs10645.10038-101F2</option>
<option value="CNhs10646.10039-101F3">CNhs10646.10039-101F3</option>
<option value="CNhs10647.10040-101F4">CNhs10647.10040-101F4</option>
<option value="CNhs10648.10041-101F5">CNhs10648.10041-101F5</option>
<option value="CNhs10649.10042-101F6">CNhs10649.10042-101F6</option>
<option value="CNhs10650.10043-101F7">CNhs10650.10043-101F7</option>
<option value="CNhs10651.10044-101F8">CNhs10651.10044-101F8</option>
<option value="CNhs10652.10045-101F9">CNhs10652.10045-101F9</option>
<option value="CNhs10653.10046-101G1">CNhs10653.10046-101G1</option>
<option value="CNhs10654.10047-101G2">CNhs10654.10047-101G2</option>
<option value="CNhs10722.10399-106A3">CNhs10722.10399-106A3</option>
<option value="CNhs10723.10400-106A4">CNhs10723.10400-106A4</option>
<option value="CNhs10724.10405-106A9">CNhs10724.10405-106A9</option>
<option value="CNhs10726.10408-106B3">CNhs10726.10408-106B3</option>
<option value="CNhs10727.10409-106B4">CNhs10727.10409-106B4</option>
<option value="CNhs10728.10410-106B5">CNhs10728.10410-106B5</option>
<option value="CNhs10729.10411-106B6">CNhs10729.10411-106B6</option>
<option value="CNhs10730.10412-106B7">CNhs10730.10412-106B7</option>
<option value="CNhs10731.10413-106B8">CNhs10731.10413-106B8</option>
<option value="CNhs10732.10414-106B9">CNhs10732.10414-106B9</option>
<option value="CNhs10733.10415-106C1">CNhs10733.10415-106C1</option>
<option value="CNhs10734.10417-106C3">CNhs10734.10417-106C3</option>
<option value="CNhs10735.10418-106C4">CNhs10735.10418-106C4</option>
<option value="CNhs10736.10419-106C5">CNhs10736.10419-106C5</option>
<option value="CNhs10737.10420-106C6">CNhs10737.10420-106C6</option>
<option value="CNhs10738.10421-106C7">CNhs10738.10421-106C7</option>
<option value="CNhs10739.10422-106C8">CNhs10739.10422-106C8</option>
<option value="CNhs10740.10423-106C9">CNhs10740.10423-106C9</option>
<option value="CNhs10741.10424-106D1">CNhs10741.10424-106D1</option>
<option value="CNhs10742.10425-106D2">CNhs10742.10425-106D2</option>
<option value="CNhs10743.10426-106D3">CNhs10743.10426-106D3</option>
<option value="CNhs10744.10427-106D4">CNhs10744.10427-106D4</option>
<option value="CNhs10745.10428-106D5">CNhs10745.10428-106D5</option>
<option value="CNhs10746.10429-106D6">CNhs10746.10429-106D6</option>
<option value="CNhs10747.10430-106D7">CNhs10747.10430-106D7</option>
<option value="CNhs10748.10431-106D8">CNhs10748.10431-106D8</option>
<option value="CNhs10750.10432-106D9">CNhs10750.10432-106D9</option>
<option value="CNhs10751.10433-106E1">CNhs10751.10433-106E1</option>
<option value="CNhs10752.10434-106E2">CNhs10752.10434-106E2</option>
<option value="CNhs10753.10436-106E4">CNhs10753.10436-106E4</option>
<option value="CNhs10837.11207-116A1">CNhs10837.11207-116A1</option>
<option value="CNhs10838.11210-116A4">CNhs10838.11210-116A4</option>
<option value="CNhs10839.11212-116A6">CNhs10839.11212-116A6</option>
<option value="CNhs10842.11215-116A9">CNhs10842.11215-116A9</option>
<option value="CNhs10843.11216-116B1">CNhs10843.11216-116B1</option>
<option value="CNhs10844.11217-116B2">CNhs10844.11217-116B2</option>
<option value="CNhs10845.11218-116B3">CNhs10845.11218-116B3</option>
<option value="CNhs10847.11220-116B5">CNhs10847.11220-116B5</option>
<option value="CNhs10848.11222-116B7">CNhs10848.11222-116B7</option>
<option value="CNhs10850.11247-116E5">CNhs10850.11247-116E5</option>
<option value="CNhs10851.11255-116F4">CNhs10851.11255-116F4</option>
<option value="CNhs10852.11224-116B9">CNhs10852.11224-116B9</option>
<option value="CNhs10853.11225-116C1">CNhs10853.11225-116C1</option>
<option value="CNhs10854.11226-116C2">CNhs10854.11226-116C2</option>
<option value="CNhs10855.11227-116C3">CNhs10855.11227-116C3</option>
<option value="CNhs10857.11228-116C4">CNhs10857.11228-116C4</option>
<option value="CNhs10858.11229-116C5">CNhs10858.11229-116C5</option>
<option value="CNhs10859.11230-116C6">CNhs10859.11230-116C6</option>
<option value="CNhs10860.11231-116C7">CNhs10860.11231-116C7</option>
<option value="CNhs10861.11232-116C8">CNhs10861.11232-116C8</option>
<option value="CNhs10862.11233-116C9">CNhs10862.11233-116C9</option>
<option value="CNhs10863.11234-116D1">CNhs10863.11234-116D1</option>
<option value="CNhs10864.11235-116D2">CNhs10864.11235-116D2</option>
<option value="CNhs10865.11236-116D3">CNhs10865.11236-116D3</option>
<option value="CNhs10866.11237-116D4">CNhs10866.11237-116D4</option>
<option value="CNhs10867.11238-116D5">CNhs10867.11238-116D5</option>
<option value="CNhs10868.11239-116D6">CNhs10868.11239-116D6</option>
<option value="CNhs10869.11240-116D7">CNhs10869.11240-116D7</option>
<option value="CNhs10870.11241-116D8">CNhs10870.11241-116D8</option>
<option value="CNhs10871.11242-116D9">CNhs10871.11242-116D9</option>
<option value="CNhs10872.11243-116E1">CNhs10872.11243-116E1</option>
<option value="CNhs10874.11245-116E3">CNhs10874.11245-116E3</option>
<option value="CNhs10875.11246-116E4">CNhs10875.11246-116E4</option>
<option value="CNhs10876.11248-116E6">CNhs10876.11248-116E6</option>
<option value="CNhs10877.11249-116E7">CNhs10877.11249-116E7</option>
<option value="CNhs10878.11250-116E8">CNhs10878.11250-116E8</option>
<option value="CNhs10879.11251-116E9">CNhs10879.11251-116E9</option>
<option value="CNhs10881.11252-116F1">CNhs10881.11252-116F1</option>
<option value="CNhs10882.11253-116F2">CNhs10882.11253-116F2</option>
<option value="CNhs10883.11254-116F3">CNhs10883.11254-116F3</option>
<option value="CNhs10884.11256-116F5">CNhs10884.11256-116F5</option>
<option value="CNhs11045.10449-106F8">CNhs11045.10449-106F8</option>
<option value="CNhs11046.10450-106F9">CNhs11046.10450-106F9</option>
<option value="CNhs11047.10451-106G1">CNhs11047.10451-106G1</option>
<option value="CNhs11049.10452-106G2">CNhs11049.10452-106G2</option>
<option value="CNhs11050.10453-106G3">CNhs11050.10453-106G3</option>
<option value="CNhs11051.11376-118A8">CNhs11051.11376-118A8</option>
<option value="CNhs11052.11467-119B9">CNhs11052.11467-119B9</option>
<option value="CNhs11054.11473-119C6">CNhs11054.11473-119C6</option>
<option value="CNhs11057.11548-120B9">CNhs11057.11548-120B9</option>
<option value="CNhs11061.11221-116B6">CNhs11061.11221-116B6</option>
<option value="CNhs11062.11227-116C3">CNhs11062.11227-116C3</option>
<option value="CNhs11063.11275-116H6">CNhs11063.11275-116H6</option>
<option value="CNhs11064.11272-116H3">CNhs11064.11272-116H3</option>
<option value="CNhs11065.11468-119C1">CNhs11065.11468-119C1</option>
<option value="CNhs11073.11487-119E2">CNhs11073.11487-119E2</option>
<option value="CNhs11074.11555-120C7">CNhs11074.11555-120C7</option>
<option value="CNhs11075.12176-128I7">CNhs11075.12176-128I7</option>
<option value="CNhs11076.12177-128I8">CNhs11076.12177-128I8</option>
<option value="CNhs11077.11273-116H4">CNhs11077.11273-116H4</option>
<option value="CNhs11079.11278-116H9">CNhs11079.11278-116H9</option>
<option value="CNhs11082.11280-116I2">CNhs11082.11280-116I2</option>
<option value="CNhs11083.11281-116I3">CNhs11083.11281-116I3</option>
<option value="CNhs11084.11282-116I4">CNhs11084.11282-116I4</option>
<option value="CNhs11085.11283-116I5">CNhs11085.11283-116I5</option>
<option value="CNhs11086.11284-116I6">CNhs11086.11284-116I6</option>
<option value="CNhs11087.11285-116I7">CNhs11087.11285-116I7</option>
<option value="CNhs11088.11286-116I8">CNhs11088.11286-116I8</option>
<option value="CNhs11090.11289-117A2">CNhs11090.11289-117A2</option>
<option value="CNhs11091.11290-117A3">CNhs11091.11290-117A3</option>
<option value="CNhs11092.11292-117A5">CNhs11092.11292-117A5</option>
<option value="CNhs11100.10438-106E6">CNhs11100.10438-106E6</option>
<option value="CNhs11183.10442-106F1">CNhs11183.10442-106F1</option>
<option value="CNhs11185.10444-106F3">CNhs11185.10444-106F3</option>
<option value="CNhs11243.10439-106E7">CNhs11243.10439-106E7</option>
<option value="CNhs11244.10441-106E9">CNhs11244.10441-106E9</option>
<option value="CNhs11245.10442-106F1">CNhs11245.10442-106F1</option>
<option value="CNhs11247.10443-106F2">CNhs11247.10443-106F2</option>
<option value="CNhs11248.10444-106F3">CNhs11248.10444-106F3</option>
<option value="CNhs11249.10448-106F7">CNhs11249.10448-106F7</option>
<option value="CNhs11250.10454-106G4">CNhs11250.10454-106G4</option>
<option value="CNhs11251.10455-106G5">CNhs11251.10455-106G5</option>
<option value="CNhs11252.10463-106H4">CNhs11252.10463-106H4</option>
<option value="CNhs11253.10464-106H5">CNhs11253.10464-106H5</option>
<option value="CNhs11254.10465-106H6">CNhs11254.10465-106H6</option>
<option value="CNhs11255.10469-106I1">CNhs11255.10469-106I1</option>
<option value="CNhs11256.10470-106I2">CNhs11256.10470-106I2</option>
<option value="CNhs11257.10471-106I3">CNhs11257.10471-106I3</option>
<option value="CNhs11258.10474-106I6">CNhs11258.10474-106I6</option>
<option value="CNhs11259.10488-107B2">CNhs11259.10488-107B2</option>
<option value="CNhs11260.10490-107B4">CNhs11260.10490-107B4</option>
<option value="CNhs11261.10492-107B6">CNhs11261.10492-107B6</option>
<option value="CNhs11263.10493-107B7">CNhs11263.10493-107B7</option>
<option value="CNhs11264.10494-107B8">CNhs11264.10494-107B8</option>
<option value="CNhs11265.10496-107C1">CNhs11265.10496-107C1</option>
<option value="CNhs11266.10497-107C2">CNhs11266.10497-107C2</option>
<option value="CNhs11267.10475-106I7">CNhs11267.10475-106I7</option>
<option value="CNhs11268.10476-106I8">CNhs11268.10476-106I8</option>
<option value="CNhs11269.10477-106I9">CNhs11269.10477-106I9</option>
<option value="CNhs11270.10483-107A6">CNhs11270.10483-107A6</option>
<option value="CNhs11271.10484-107A7">CNhs11271.10484-107A7</option>
<option value="CNhs11272.10485-107A8">CNhs11272.10485-107A8</option>
<option value="CNhs11273.10486-107A9">CNhs11273.10486-107A9</option>
<option value="CNhs11274.10487-107B1">CNhs11274.10487-107B1</option>
<option value="CNhs11275.10499-107C4">CNhs11275.10499-107C4</option>
<option value="CNhs11276.10508-107D4">CNhs11276.10508-107D4</option>
<option value="CNhs11277.10509-107D5">CNhs11277.10509-107D5</option>
<option value="CNhs11279.10510-107D6">CNhs11279.10510-107D6</option>
<option value="CNhs11280.10513-107D9">CNhs11280.10513-107D9</option>
<option value="CNhs11281.10514-107E1">CNhs11281.10514-107E1</option>
<option value="CNhs11282.10534-107G3">CNhs11282.10534-107G3</option>
<option value="CNhs11283.10536-107G5">CNhs11283.10536-107G5</option>
<option value="CNhs11284.10539-107G8">CNhs11284.10539-107G8</option>
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<option value="CNhs13487.11877-125C5">CNhs13487.11877-125C5</option>
<option value="CNhs13488.11878-125C6">CNhs13488.11878-125C6</option>
<option value="CNhs13489.11879-125C7">CNhs13489.11879-125C7</option>
<option value="CNhs13490.11881-125C9">CNhs13490.11881-125C9</option>
<option value="CNhs13491.11883-125D2">CNhs13491.11883-125D2</option>
<option value="CNhs13492.11884-125D3">CNhs13492.11884-125D3</option>
<option value="CNhs13493.11886-125D5">CNhs13493.11886-125D5</option>
<option value="CNhs13494.11888-125D7">CNhs13494.11888-125D7</option>
<option value="CNhs13495.11889-125D8">CNhs13495.11889-125D8</option>
<option value="CNhs13496.11891-125E1">CNhs13496.11891-125E1</option>
<option value="CNhs13497.11892-125E2">CNhs13497.11892-125E2</option>
<option value="CNhs13498.11895-125E5">CNhs13498.11895-125E5</option>
<option value="CNhs13499.11896-125E6">CNhs13499.11896-125E6</option>
<option value="CNhs13500.11899-125E9">CNhs13500.11899-125E9</option>
<option value="CNhs13501.11900-125F1">CNhs13501.11900-125F1</option>
<option value="CNhs13502.10788-110H5">CNhs13502.10788-110H5</option>
<option value="CNhs13503.10830-111D2">CNhs13503.10830-111D2</option>
<option value="CNhs13504.10831-111D3">CNhs13504.10831-111D3</option>
<option value="CNhs13505.10837-111D9">CNhs13505.10837-111D9</option>
<option value="CNhs13507.11842-124H6">CNhs13507.11842-124H6</option>
<option value="CNhs13508.11843-124H7">CNhs13508.11843-124H7</option>
<option value="CNhs13512.11906-125F7">CNhs13512.11906-125F7</option>
<option value="CNhs13513.11907-125F8">CNhs13513.11907-125F8</option>
<option value="CNhs13532.11874-125C2">CNhs13532.11874-125C2</option>
<option value="CNhs13533.11875-125C3">CNhs13533.11875-125C3</option>
<option value="CNhs13535.11901-125F2">CNhs13535.11901-125F2</option>
<option value="CNhs13536.11902-125F3">CNhs13536.11902-125F3</option>
<option value="CNhs13537.11904-125F5">CNhs13537.11904-125F5</option>
<option value="CNhs13538.11908-125F9">CNhs13538.11908-125F9</option>
<option value="CNhs13539.11909-125G1">CNhs13539.11909-125G1</option>
<option value="CNhs13540.11910-125G2">CNhs13540.11910-125G2</option>
<option value="CNhs13541.11789-124B7">CNhs13541.11789-124B7</option>
<option value="CNhs13543.11880-125C8">CNhs13543.11880-125C8</option>
<option value="CNhs13544.11882-125D1">CNhs13544.11882-125D1</option>
<option value="CNhs13545.11885-125D4">CNhs13545.11885-125D4</option>
<option value="CNhs13546.11887-125D6">CNhs13546.11887-125D6</option>
<option value="CNhs13547.11903-125F4">CNhs13547.11903-125F4</option>
<option value="CNhs13548.11911-125G3">CNhs13548.11911-125G3</option>
<option value="CNhs13549.11912-125G4">CNhs13549.11912-125G4</option>
<option value="CNhs13550.11929-125I3">CNhs13550.11929-125I3</option>
<option value="CNhs13551.11930-125I4">CNhs13551.11930-125I4</option>
<option value="CNhs13552.11931-125I5">CNhs13552.11931-125I5</option>
<option value="CNhs13553.11932-125I6">CNhs13553.11932-125I6</option>
<option value="CNhs13639.13311-142I8">CNhs13639.13311-142I8</option>
<option value="CNhs13646.13317-143A5">CNhs13646.13317-143A5</option>
<option value="CNhs13650.13323-143B2">CNhs13650.13323-143B2</option>
<option value="CNhs13738.13366-143F9">CNhs13738.13366-143F9</option>
<option value="CNhs13793.10167-103B5">CNhs13793.10167-103B5</option>
<option value="CNhs13794.10168-103B6">CNhs13794.10168-103B6</option>
<option value="CNhs13795.10169-103B7">CNhs13795.10169-103B7</option>
<option value="CNhs13796.10170-103B8">CNhs13796.10170-103B8</option>
<option value="CNhs13797.10171-103B9">CNhs13797.10171-103B9</option>
<option value="CNhs13798.10172-103C1">CNhs13798.10172-103C1</option>
<option value="CNhs13799.10173-103C2">CNhs13799.10173-103C2</option>
<option value="CNhs13800.10174-103C3">CNhs13800.10174-103C3</option>
<option value="CNhs13801.10175-103C4">CNhs13801.10175-103C4</option>
<option value="CNhs13802.10177-103C6">CNhs13802.10177-103C6</option>
<option value="CNhs13804.10179-103C8">CNhs13804.10179-103C8</option>
<option value="CNhs13805.10180-103C9">CNhs13805.10180-103C9</option>
<option value="CNhs13807.10181-103D1">CNhs13807.10181-103D1</option>
<option value="CNhs13808.10182-103D2">CNhs13808.10182-103D2</option>
<option value="CNhs13809.10183-103D3">CNhs13809.10183-103D3</option>
<option value="CNhs13811.11916-125G8">CNhs13811.11916-125G8</option>
<option value="CNhs13812.11920-125H3">CNhs13812.11920-125H3</option>
<option value="CNhs13813.11913-125G5">CNhs13813.11913-125G5</option>
<option value="CNhs13814.11917-125G9">CNhs13814.11917-125G9</option>
<option value="CNhs13815.11655-122E8">CNhs13815.11655-122E8</option>
<option value="CNhs13816.11933-125I7">CNhs13816.11933-125I7</option>
<option value="CNhs13817.11934-125I8">CNhs13817.11934-125I8</option>
<option value="CNhs13818.11935-125I9">CNhs13818.11935-125I9</option>
<option value="CNhs13819.11936-126A1">CNhs13819.11936-126A1</option>
<option value="CNhs13822.13425-144D5">CNhs13822.13425-144D5</option>
<option value="CNhs13826.13433-144E4">CNhs13826.13433-144E4</option>
<option value="CNhs13839.13437-144E8">CNhs13839.13437-144E8</option>
<option value="CNhs13847.13469-144I4">CNhs13847.13469-144I4</option>
</select>
<p />
<div id="sample_filter">
<br><input type="radio" name="sample" value="" checked>Union: A || B
<br><input type="radio" name="sample" value=",">Intersection: A && B
<br><input type="radio" name="sample" value="^_A$">Difference: A - B
<br><input type="radio" name="sample" value="^_B$">Difference: B - A
<br><input type="radio" name="sample" value="_A">Subnetwork: A
<br><input type="radio" name="sample" value="_B">Subnetwork: B
</div>
</div>
</div>
</div>
</div>
<div id="export_panel">
<label class="export">Export Network:</label>
  <button id="btn_exportGraphml">graphml</button>
  <button id="btn_exportXgmml">xgmml</button>
  <button id="btn_exportSIF">sif</button>
  <button id="btn_exportJSON">JSON</button>
<label class="export">Export Image:</label>
  <button id="btn_exportPDF">PDF</button>
  <button id="btn_exportPNG">PNG</button>
  <button id="btn_exportSVG">SVG</button>
</div>
</div>
</div>
</div>
</div>


<div id="cytoscapeweb"></div>
<!-- Header Section -->
<div id="legend"><b>LEGEND:</b> <span class="tf">TF <img src="/resource_browser/nwfiles/tf.png" /></span>, <span class="motif">MOTIF <img src="/resource_browser/nwfiles/motif.png" /></span>,
<!-- JQuery -->
<br /><span class="tf">MOTIF->TF <img src="/resource_browser/nwfiles/motif-tf.png" /></span>, <span class="motif">TF->MOTIF <img src="/resource_browser/nwfiles/tf-motif.png" /></span></div>
<script type="text/javascript" src="//ajax.googleapis.com/ajax/libs/jquery/1.7.2/jquery.min.js"></script>
<script src="/resource_browser/nwfiles/js/jquery.ba-throttle-debounce.min.js" type="text/javascript"></script>


<!-- JQuery UI -->
<script type="text/javascript" src="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.18/jquery-ui.min.js"></script>
<link href="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.10/themes/base/jquery-ui.css" rel="stylesheet" />
<link href="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.10/themes/redmond/jquery-ui.css" rel="stylesheet" />


</div>
<!-- wWijmo Widgets -->
 
<script src="http://cdn.wijmo.com/jquery.wijmo-open.all.2.1.4.min.js" type="text/javascript"></script>
<!-- Header Section -->
<link href="http://cdn.wijmo.com/jquery.wijmo-complete.all.2.1.4.min.css" rel="stylesheet" type="text/css" />
<!-- JQuery UI -->
<script type="text/javascript" src="/resource_browser/nwfiles/jquery-ui.min.js"></script>
<link href="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.10/themes/base/jquery-ui.css" rel="stylesheet" />
<link href="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.10/themes/redmond/jquery-ui.css" rel="stylesheet" />


         <!-- JSON support for IE (needed to use JS API) -->
         <!-- JSON support for IE (needed to use JS API) -->
Line 155: Line 1,957:


<!-- F5 Cytoscape app -->
<!-- F5 Cytoscape app -->
<link href="/resource_browser/nwfiles/f5_cytoview_2.css" rel="stylesheet"/>
<link href="/resource_browser/nwfiles/css/f5_cytoview_3.css" rel="stylesheet"/>
         <script type="text/javascript" src="/resource_browser/nwfiles/f5_cytoview_5.js"></script>  
<script type="text/javascript" src="/resource_browser/nwfiles/js/encode_decode.js"></script>  
         <script type="text/javascript" src="/resource_browser/nwfiles/js/f5_cytoview_6.js"></script>  


<!-- Data Loading Section -->
<!-- Data Loading Section -->
<script type="text/javascript">
<script type="text/javascript">
// Load Data
// Set initial sample
var durl = "/resource_browser/nwfiles/CNhs10746.10429-106D6.xgmml";
$("#sample_a").val('CNhs10746.10429-106D6');
 
var request = new XMLHttpRequest();
request.open("GET", durl , false);
request.send(null);
var xml = request.responseText;


// initialization cytoscape options
// initialization cytoscape options

Revision as of 16:19, 24 July 2012

Details

Transcriptome profiling

hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}

Sample info

strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition{{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}


RNA info

sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration{{{rna_concentration}}}


LEGEND: TF , MOTIF ,
MOTIF->TF , TF->MOTIF
Nodes
Edges
TF->MOTIF
Promoters
Promoter Z-Score filter:

Motif degree filter:
TF indegree filter:
Source TF (Outdegree > 0)
Target TF (Outdegree = 0)


A =
B =


Union: A || B
Intersection: A && B
Difference: A - B
Difference: B - A
Subnetwork: A
Subnetwork: B