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MacroAPE 1083:CNhs12008 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;64.82599928977606;135.90670435884647;116.65007504190746;185.78103666485808!2;128.50522467250875;83.3904821020112;74.63123457156654;216.63687...")
 
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5!10717-109I6;0.467578!10455-106G5;0.551308!10534-107G3;0.00303511!10429-106D6;0.00356241!10464-106H5;0.00805701!10827-111C8;0.00406455!10789-110H6;0.00614241!10828-111C9;0.00267237!10788-110H5;0.00621408!10792-110H9;0.00610929!10765-110E9;0.00127571!10829-111D1;0.00629668!10830-111D2;0.000993129!10831-111D3;0.0386885!10832-111D4;0.0505808!10833-111D5;0.00550601!10764-110E8;0.00278031!10770-110F5;0.00250602!10399-106A3;0.00201254!10400-106A4;0.00102167!10405-106A9;0.00195837!10834-111D6;0.000752375!10835-111D7;0.00492664!10836-111D8;0.0437632!10837-111D9;0.130102!10699-109G6;0.0301049!10802-111A1;0.0889104!10796-110I4;0.088161!10010-101C1;0.102384!10810-111A9;0.0206503!10421-106C7;0.279933!10708-109H6;0.0106377!12235-129G3;0.788246!12236-129G4;0.751067!12237-129G5;0.514568!10167-103B5;0.669187!10151-102I7;0.0035966!10428-106D5;0.00347919!10795-110I3;0.159935!10805-111A4;0.00108849!10052-101G7;0.97632!10189-103D9;0.0335945!10589-108D4;0.252752!10425-106D2;0.0648346!10427-106D4;0.00538492!10702-109G9;0.00163185!10432-106D9;0.116802!10496-107C1;0.310672!10718-109I7;0.512161!10011-101C2;0.00184117!10053-101G8;0.005783!10686-109F2;0.0639291!10084-102B3;0.00455593!10012-101C3;0.00785606!10085-102B4;0.00461028!10482-107A5;0.0105903!10419-106C5;0.404352!10080-102A8;0.14385!10760-110E4;0.0354487!10709-109H7;0.179679!10710-109H8;0.74169!10703-109H1;0.0704299!10719-109I8;0.585526!10642-109A3;0.789643!10177-103C6;0.340327!10164-103B2;0.0070914!10173-103C2;0.00818061!10166-103B4;0.0147488!10083-102B2;0.00676778!10188-103D8;0.0105416!10552-107I3;0.00131785!10553-107I4;0.00603285!10013-101C4;0.470567!10536-107G5;0.00543428!10618-108G6;0.345092!10423-106C9;0.205841!10785-110H2;0.181689!12238-129G6;0.278606!12239-129G7;0.679393!12240-129G8;0.267891!10416-106C2;0.40137!10801-110I9;0.00086128!10766-110F1;0.00484534!10824-111C5;0.0177493!10825-111C6;0.0842462!10826-111C7;0.107017!10454-106G4;0.0889151!10409-106B4;0.0479747!10638-108I8;0.0326604!10636-108I6;0.24059!10513-107D9;0.555034!10420-106C6;0.333845!10082-102B1;0.371565!10014-101C5;0.191143!10070-101I7;0.0278048!10452-106G2;0.046628!10453-106G3;0.0532487!10449-106F8;0.00275521!10042-101F6;0.00316387!10069-101I6;0.00437042!10193-103E4;0.0363147!10631-108I1;0.00604819!10438-106E6;2.45478e-05!10488-107B2;0.903001!10196-103E7;0.0518662!10071-101I8;0.022502!10071-101I8;0.214678!10041-101F5;0.0198833!10451-106G1;0.0159505!10450-106F9;0.048687!10604-108F1;0.146472!10605-108F2;0.563187!10606-108F3;0.925613!10603-108E9;0.288437!10497-107C2;0.411326!10448-106F7;0.444865!10643-109A4;0.384914!10426-106D3;0.29366!10431-106D8;0.631198!10197-103E8;0.30678!10443-106F2;0.0704776!10815-111B5;0.40876!10816-111B6;0.157204!10817-111B7;0.295742!10015-101C6;0.14464!10410-106B5;0.0118068!10054-101G9;0.30305!10758-110E2;0.0173937!10711-109H9;0.491988!10040-101F4;0.163714!10470-106I2;0.00819898!10415-106C1;0.633205!10198-103E9;0.383291!10614-108G2;0.0138228!10612-108F9;0.414774!10549-107H9;0.319118!10615-108G3;0.389571!10487-107B1;0.823095!10433-106E1;0.0409474!10688-109F4;0.721556!10444-106F3;0.859548!10444-106F3;0.791624!10485-107A8;0.601705!10413-106B8;0.927538!10175-103C4;0.498595!10161-103A8;0.00865572!12131-128D7;0.00224373!10624-108H3;0.99237!10712-109I1;0.21882!10205-103F7;0.000538937!10206-103F8;0.00229883!10207-103F9;0.00314287!10050-101G5;0.00276515!10051-101G6;0.0076695!10016-101C7;0.0251838!10046-101G1;0.0050517!10778-110G4;0.0032123!10633-108I3;0.0483257!10818-111B8;0.770968!10819-111B9;0.257203!10820-111C1;0.258967!10484-107A7;0.275411!10808-111A7;0.656469!10169-103B7;0.00961526!10153-102I9;0.00407588!13425-144D5;0.00262121!13433-144E4;0.948629!13437-144E8;0.952476!11904-125F5;0.775294!11905-125F6;0.195026!10039-101F3;0.375974!10791-110H8;0.00793822!10017-101C8;0.0117316!10045-101F9;0.0950997!10509-107D5;0.0125535!10839-111E2;0.86174!10692-109F8;0.419165!10079-102A7;0.366754!10078-102A6;0.0245655!10721-110A1;0.060923!10569-108B2;0.042582!10570-108B3;0.331011!10571-108B4;0.992079!10647-109A8;0.240646!10752-110D5;0.104994!10782-110G8;0.0281472!10726-110A6;0.0314586!10018-101C9;0.626893!10086-102B5;0.00188925!10182-103D2;0.163787!10165-103B3;0.00232791!10499-107C4;0.00157299!10408-106B3;0.142069!10019-101D1;0.179757!10068-101I5;0.0351598!10075-102A3;0.00873412!10077-102A5;0.204906!10727-110A7;0.179897!10775-110G1;3.89291e-05!10412-106B7;0.000194892!12231-129F8;0.968013!12232-129F9;0.0420204!12233-129G1;0.0270035!12234-129G2;0.0673229!10414-106B9;0.0913158!10170-103B8;0.731294!10183-103D3;0.0142828!10150-102I6;0.00805435!10174-103C3;0.00634846!10155-103A2;0.00464777!10038-101F2;0.00115923!10838-111E1;0.00248851!10759-110E3;0.255348!10514-107E1;0.9779!10465-106H6;0.157047!10691-109F7;0.46673!10843-111E6;0.617639!10844-111E7;0.776946!11747-123G1;0.532031!11748-123G2;0.504995!11749-123G3;0.77403!11750-123G4;0.432046!11751-123G5;0.347163!11840-124H4;0.27873!11752-123G6;0.728786!11753-123G7;0.893153!11754-123G8;0.510574!11755-123G9;0.566438!11756-123H1;0.578351!11833-124G6;0.303602!11760-123H5;0.754306!11836-124G9;0.645517!11758-123H3;0.658538!11835-124G8;0.878602!11762-123H7;0.0503312!11838-124H2;0.122472!11757-123H2;0.0789456!11759-123H4;0.886685!11761-123H6;0.34178!11842-124H6;0.324801!11837-124H1;0.691297!10568-108B1;0.098621!13230-141I8;0.323004!13231-141I9;0.668727!10696-109G3;0.832569!10493-107B7;0.0393818!10494-107B8;0.939331!10850-111F4;0.302552!10851-111F5;0.937368!10852-111F6;0.437052!10853-111F7;0.537209!10854-111F8;0.916619!10855-111F9;0.243952!10856-111G1;0.403894!10847-111F1;0.403059!10846-111E9;0.512858!10848-111F2;0.578986!10845-111E8;0.66982!10857-111G2;0.1099!10858-111G3;0.939597!10156-103A3;0.0755136!11901-125F2;0.00723024!11902-125F3;0.186204!11903-125F4;0.174159!10689-109F5;0.1229!10648-109A9;0.870402!10784-110H1;0.847964!10744-110C6;0.275106!10772-110F7;0.000419628!10474-106I6;0.00359352!10600-108E6;7.77305e-06!10684-109E9;0.126258!12226-129F3;0.189036!12227-129F4;0.0603907!10508-107D4;0.0835711!10539-107G8;0.813169!10607-108F4;0.70107!10555-107I6;0.204381!10774-110F9;0.239358!10637-108I7;0.153171!10663-109C6;0.906825!10728-110A8;0.933446!10729-110A9;0.521403!10430-106D7;0.0743423!10730-110B1;0.073062!10813-111B3;0.484978!10812-111B2;0.0329297!10037-101F1;0.354756!10172-103C1;0.00915295!10163-103B1;0.00482093!10076-102A4;0.00396287!10073-102A1;0.0102523!10036-101E9;0.0346462!10195-103E6;0.00671109!10277-104E7;0.00571989!10434-106E2;0.000889105!10550-107I1;0.231903!10545-107H5;0.486625!10544-107H4;0.440415!10704-109H2;0.766589!10510-107D6;0.302405!10558-107I9;0.0696349!10020-101D2;0.323088!10732-110B3;0.0106125!10049-101G4;0.432817!10698-109G5;0.49199!10437-106E5;0.344263!10417-106C3;0.952603!10035-101E8;0.747638!10171-103B9;0.0057742!10157-103A4;0.00666258!10034-101E7;0.00522241!10072-101I9;0.00622705!10199-103F1;0.0343658!10200-103F2;0.367436!10697-109G4;0.00933587!10723-110A3;0.864971!10179-103C8;0.735091!10160-103A7;0.0343468!10180-103C9;0.033703!10162-103A9;0.0389233!10021-101D3;0.0384416!10840-111E3;0.142893!10706-109H4;0.000441102!10033-101E6;0.911024!10032-101E5;0.00221978!10490-107B4;0.00660902!10439-106E7;0.208982!10022-101D4;0.882285!10176-103C5;0.0101315!10469-106I1;0.00591238!10067-101I4;0.558081!10411-106B6;0.00967905!10471-106I3;0.971029!10030-101E3;0.186962!10475-106I7;0.0029112!10787-110H4;0.96769!10477-106I9;0.0855288!10695-109G2;0.243742!11771-123I7;0.0042276!11772-123I8;0.267698!11773-123I9;0.559981!10093-102C3;0.0118799!10442-106F1;0.387521!10442-106F1;0.469873!10201-103F3;0.55679!10639-108I9;0.0205002!11843-124H7;0.234377!11841-124H5;0.547879!10693-109F9;0.481335!10436-106E4;0.545915!10483-107A6;0.253096!10282-104F3;0.168791!10023-101D5;0.116851!10066-101I3;0.0135687!10065-101I2;0.170798!10800-110I8;0.075648!10610-108F7;0.995823!10841-111E4;0.873263!10541-107H1;0.569057!10842-111E5;0.945508!10562-108A4;0.31839!10024-101D6;0.988356!10064-101I1;0.0533279!10609-108F6;0.136731!10048-101G3;0.294095!10781-110G7;0.00605516!10181-103D1;0.824954!10159-103A6;0.00340583!10056-101H2;0.00502007!10737-110B8;0.00248386!10025-101D7;0.0858117!10044-101F8;0.772698!10424-106D1;0.245695!10463-106H4;0.000750379!10616-108G4;0.842544!10486-107A9;0.494335!10062-101H8;0.144586!10202-103F4;0.0242675!10158-103A5;0.262625!10441-106E9;0.00192454!10031-101E4;0.710055!10063-101H9;0.00566509!10063-101H9;0.0153356!11763-123H8;0.118241!11765-123I1;0.298028!11768-123I4;0.156615!10807-111A6;0.348019!10790-110H7;0.234142!10798-110I6;0.789824!10786-110H3;0.469846!10591-108D6;0.826683!10593-108D8;0.899995!10590-108D5;0.247756!10026-101D8;0.255274!10096-102C6;0.213632!10168-103B6;0.850961!10154-103A1;0.0139608!10209-103G2;0.0053072!10061-101H7;0.113519!10027-101D9;0.0877262!10043-101F7;0.069536!10783-110G9;0.700603!10028-101E1;0.838419!10060-101H6;0.0631023!10203-103F5;0.0503882!10059-101H5;0.110618!10047-101G2;0.110746!10029-101E2;0.638912!10058-101H4;0.200763!10418-106C4;0.0782093!10492-107B6;0.969992!10694-109G1;0.3969!10797-110I5;0.000984565!10057-101H3;0.500639!10100-102D1;0.101602!10055-101H1;0.00679424!10204-103F6;0.024137!10191-103E2;0.00727967!10563-108A5;0.207512
|name=CNhs12008_bu_f2
|name=CNhs12008_bu_f2
|tomtom_result=z#MA0255.1;-1;2.38626e-05;0.0113586;0.0227172;8;TTGGAGTGA;TTGAGTGATT;+!Nkx3-2#MA0122.1;-1;0.00515043;2.4516;1;8;TTGGAGTGA;TTAAGTGGA;+!STB3#MA0390.1;0;0.00998696;4.75379;1;9;TTGGAGTGA;CCAGAGTGAAAAATTTTGGAC;-!ARG81#MA0272.1;-2;0.0112484;5.35423;1;7;TTGGAGTGA;AGAGTCAC;-!Macho-1#MA0118.1;0;0.0153263;7.29531;1;9;TTGGAGTGA;TGGGGGGTC;+!Tal1::Gata1#MA0140.1;0;0.0159751;7.60416;1;9;TTGGAGTGA;CTGGTGGGGACAGATAAG;+!ADR1#MA0268.1;0;0.0176088;8.38181;1;7;TTGGAGTGA;GTGGGGT;-
}}
}}

Latest revision as of 12:10, 7 September 2012

Full Name: CNhs12008_bu_f2

Motif matrix
POACGT
164.82599928977606135.90670435884647116.65007504190746185.78103666485808
2128.5052246725087583.390482102011274.63123457156654216.63687400930132
33.53398275876068453.5339827587606845298.5770310753506197.5188187625162
40.00.0503.163815355387950.0
5503.163815355387950.00.00.0
60.00.0503.163815355387950.0
780.3140606009721121.14097184915933123.78704894008312177.9217339651734
818.286542774720026181.54179203490935300.41431465002692.921165895731702
9211.58404213312588116.85504983446542161.8699560205656412.854767367230988

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
z#MA0255.1-12.38626e-050.01135860.02271728TTGGAGTGATTGAGTGATT+
Nkx3-2#MA0122.1-10.005150432.451618TTGGAGTGATTAAGTGGA+
STB3#MA0390.100.009986964.7537919TTGGAGTGACCAGAGTGAAAAATTTTGGAC-
ARG81#MA0272.1-20.01124845.3542317TTGGAGTGAAGAGTCAC-
Macho-1#MA0118.100.01532637.2953119TTGGAGTGATGGGGGGTC+
Tal1::Gata1#MA0140.100.01597517.6041619TTGGAGTGACTGGTGGGGACAGATAAG+
ADR1#MA0268.100.01760888.3818117TTGGAGTGAGTGGGGT-
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