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MacroAPE 1083:GGAAGAACTAG,motif201: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;147.576;105.651;1249.365;174.408!2;127.452;172.731;1214.148;162.669!3;1264.458;147.576;142.545;122.421!4;1227.564;114.036;171.054;164.346!5;...")
 
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8B1;0.226404!13230-141I8;0.942934!13231-141I9;0.505749!10696-109G3;0.611878!10493-107B7;0.870739!10494-107B8;0.254874!10850-111F4;0.0834368!10851-111F5;0.817074!10852-111F6;0.308086!10853-111F7;0.220146!10854-111F8;0.712993!10855-111F9;0.872868!10856-111G1;0.438292!10847-111F1;0.919153!10846-111E9;0.976127!10848-111F2;0.408786!10845-111E8;0.262918!10857-111G2;0.725943!10858-111G3;0.923774!10156-103A3;0.611167!11901-125F2;0.0494943!11902-125F3;0.72589!11903-125F4;0.594781!10689-109F5;0.767017!10648-109A9;0.542617!10784-110H1;0.782728!10744-110C6;0.623058!10772-110F7;0.609662!10474-106I6;0.914915!10600-108E6;0.816291!10684-109E9;0.734534!12226-129F3;0.831335!12227-129F4;0.0583815!10508-107D4;0.605934!10539-107G8;0.0703889!10607-108F4;0.0605513!10555-107I6;0.756571!10774-110F9;0.206517!10637-108I7;0.882673!10663-109C6;0.810756!10728-110A8;0.817731!10729-110A9;0.876341!10430-106D7;0.970912!10730-110B1;0.937835!10813-111B3;0.567612!10812-111B2;0.570737!10037-101F1;0.339015!10172-103C1;0.114806!10163-103B1;0.039503!10076-102A4;0.036276!10073-102A1;0.0833889!10036-101E9;0.0668629!10195-103E6;0.0636819!10277-104E7;0.0829944!10434-106E2;0.0444424!10550-107I1;0.0278842!10545-107H5;0.731991!10544-107H4;0.0367414!10704-109H2;0.308982!10510-107D6;0.565892!10558-107I9;0.941268!10020-101D2;0.909767!10732-110B3;0.775781!10049-101G4;0.56915!10698-109G5;0.269853!10437-106E5;0.502024!10417-106C3;0.464066!10035-101E8;0.854035!10171-103B9;0.0723898!10157-103A4;0.0715402!10034-101E7;0.0470808!10072-101I9;0.0911127!10199-103F1;0.075971!10200-103F2;0.940664!10697-109G4;0.890578!10723-110A3;0.667393!10179-103C8;0.388705!10160-103A7;0.0271986!10180-103C9;0.0263504!10162-103A9;0.471488!10021-101D3;0.11209!10840-111E3;0.194401!10706-109H4;0.490712!10033-101E6;0.450924!10032-101E5;0.0492516!10490-107B4;0.0511691!10439-106E7;0.667746!10022-101D4;0.946414!10176-103C5;0.881813!10469-106I1;0.0878576!10067-101I4;0.818004!10411-106B6;0.308559!10471-106I3;0.31813!10030-101E3;0.175621!10475-106I7;0.044589!10787-110H4;0.214093!10477-106I9;0.704061!10695-109G2;0.591967!11771-123I7;0.969639!11772-123I8;0.0167084!11773-123I9;0.0955182!10093-102C3;0.155704!10442-106F1;0.61619!10442-106F1;0.155458!10201-103F3;0.0787024!10639-108I9;0.788771!11843-124H7;0.824589!11841-124H5;0.776514!10693-109F9;0.512669!10436-106E4;0.665989!10483-107A6;0.716677!10282-104F3;0.529739!10023-101D5;0.903646!10066-101I3;0.739846!10065-101I2;0.652997!10800-110I8;0.881843!10610-108F7;0.148782!10841-111E4;0.437344!10541-107H1;0.796112!10842-111E5;0.834396!10562-108A4;0.084019!10024-101D6;0.239026!10064-101I1;0.470983!10609-108F6;0.143301!10048-101G3;0.710309!10781-110G7;0.841986!10181-103D1;0.832866!10159-103A6;0.0380635!10056-101H2;0.0149836!10737-110B8;0.105261!10025-101D7;0.879091!10044-101F8;0.955213!10424-106D1;0.493879!10463-106H4;0.894947!10616-108G4;0.217628!10486-107A9;0.467514!10062-101H8;0.190378!10202-103F4;0.245872!10158-103A5;0.781948!10441-106E9;0.0410217!10031-101E4;0.529388!10063-101H9;0.0622484!10063-101H9;0.0845025!11763-123H8;0.208666!11765-123I1;0.340211!11768-123I4;0.557448!10807-111A6;0.509663!10790-110H7;0.970726!10798-110I6;0.935774!10786-110H3;0.556894!10591-108D6;0.814297!10593-108D8;0.679897!10590-108D5;0.532058!10026-101D8;0.944787!10096-102C6;0.530701!10168-103B6;0.159425!10154-103A1;0.0586285!10209-103G2;0.0422372!10061-101H7;0.855054!10027-101D9;0.642438!10043-101F7;0.403314!10783-110G9;0.162594!10028-101E1;0.850967!10060-101H6;0.545275!10203-103F5;0.953522!10059-101H5;0.843625!10047-101G2;0.970564!10029-101E2;0.793567!10058-101H4;0.976801!10418-106C4;0.678072!10492-107B6;0.745648!10694-109G1;0.40276!10797-110I5;0.667354!10057-101H3;0.361775!10100-102D1;0.972189!10055-101H1;0.928588!10204-103F6;0.711761!10191-103E2;0.456729!10563-108A5;0.645645
|name=GGAAGAACTAG,motif201,CNhs12625,T:1677.0(37.68%),B:21845.6(28.31%),P:1e-40
|name=GGAAGAACTAG,motif201,CNhs12625,T:1677.0(37.68%),B:21845.6(28.31%),P:1e-40
|tomtom_result=SFL1#MA0377.1;8;0.00241611;1.15007;1;11;GGAAGAACTAG;TAGAGAATAGAAGAAATAAAA;+!RGT1#MA0367.1;2;0.0031568;1.50264;1;9;GGAAGAACTAG;CCGGAAAAACT;-!ECM23#MA0293.1;0;0.00575331;2.73858;1;11;GGAAGAACTAG;TTTAGATCTTT;-!GAT4#MA0302.1;-1;0.0098485;4.68789;1;10;GGAAGAACTAG;AAAGATCTAAA;+!SRD1#MA0389.1;-3;0.010143;4.82807;1;8;GGAAGAACTAG;AGATCTAC;+!EDS1#MA0294.1;1;0.0105963;5.04382;1;8;GGAAGAACTAG;CGGAAAAAT;+!SPI1#MA0080.1;1;0.0110494;5.2595;1;5;GGAAGAACTAG;CGGAAG;+!dl_1#MA0022.1;1;0.0173791;8.27243;1;11;GGAAGAACTAG;CGGAAAAACCCC;-!GAT3#MA0301.1;-3;0.01875;8.92502;1;8;GGAAGAACTAG;AGATCTACA;+
}}
}}

Latest revision as of 12:10, 7 September 2012

Full Name: GGAAGAACTAG,motif201,CNhs12625,T:1677.0(37.68%),B:21845.6(28.31%),P:1e-40

Motif matrix
POACGT
1147.576105.6511249.365174.408
2127.452172.7311214.148162.669
31264.458147.576142.545122.421
41227.564114.036171.054164.346
5177.762169.3771168.869160.992
61195.701145.899181.116154.284
71222.533162.669150.93140.868
8174.4081183.962192.855125.775
9147.576125.775155.9611247.688
101214.148157.638171.054134.16
11149.253155.9611224.21147.576

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SFL1#MA0377.180.002416111.15007111GGAAGAACTAGTAGAGAATAGAAGAAATAAAA+
RGT1#MA0367.120.00315681.5026419GGAAGAACTAGCCGGAAAAACT-
ECM23#MA0293.100.005753312.73858111GGAAGAACTAGTTTAGATCTTT-
GAT4#MA0302.1-10.00984854.68789110GGAAGAACTAGAAAGATCTAAA+
SRD1#MA0389.1-30.0101434.8280718GGAAGAACTAGAGATCTAC+
EDS1#MA0294.110.01059635.0438218GGAAGAACTAGCGGAAAAAT+
SPI1#MA0080.110.01104945.259515GGAAGAACTAGCGGAAG+
dl_1#MA0022.110.01737918.27243111GGAAGAACTAGCGGAAAAACCCC-
GAT3#MA0301.1-30.018758.9250218GGAAGAACTAGAGATCTACA+
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