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MacroAPE 1083:PURA f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.068181818181817;1.1489898989898992;8.633838383838382;1.1489898989898992!2;1.9696969696969628;0.7878787878787878;10.242424242424244;0.0!3;6...")
 
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429-106D6;0.291674!10464-106H5;0.0976997!10827-111C8;0.124228!10789-110H6;0.418008!10828-111C9;0.700198!10788-110H5;0.471429!10792-110H9;0.672937!10765-110E9;0.184464!10829-111D1;0.968744!10830-111D2;0.4675!10831-111D3;0.197938!10832-111D4;0.644933!10833-111D5;0.195148!10764-110E8;0.276356!10770-110F5;0.525478!10399-106A3;0.818139!10400-106A4;0.908362!10405-106A9;0.933453!10834-111D6;0.938301!10835-111D7;0.649223!10836-111D8;0.870077!10837-111D9;0.513231!10699-109G6;0.634043!10802-111A1;0.766093!10796-110I4;0.807281!10010-101C1;0.691267!10810-111A9;0.269516!10421-106C7;0.405772!10708-109H6;0.723945!12235-129G3;0.818036!12236-129G4;0.000368501!12237-129G5;0.014947!10167-103B5;0.00167204!10151-102I7;0.0590411!10428-106D5;0.0843773!10795-110I3;0.368512!10805-111A4;0.576323!10052-101G7;0.796393!10189-103D9;0.76957!10589-108D4;0.863136!10425-106D2;0.454967!10427-106D4;0.0981284!10702-109G9;0.23689!10432-106D9;0.570091!10496-107C1;0.423698!10718-109I7;0.790912!10011-101C2;0.334682!10053-101G8;0.825772!10686-109F2;0.538445!10084-102B3;0.0987993!10012-101C3;0.230164!10085-102B4;0.0708374!10482-107A5;0.0657067!10419-106C5;0.260873!10080-102A8;0.077127!10760-110E4;0.00647544!10709-109H7;0.580165!10710-109H8;0.805144!10703-109H1;0.751033!10719-109I8;0.472509!10642-109A3;0.204242!10177-103C6;0.0958912!10164-103B2;0.0430053!10173-103C2;0.03237!10166-103B4;0.0125137!10083-102B2;0.036057!10188-103D8;0.0489554!10552-107I3;0.0522389!10553-107I4;0.960454!10013-101C4;0.742005!10536-107G5;0.929397!10618-108G6;0.0427298!10423-106C9;0.517417!10785-110H2;0.410187!12238-129G6;0.95376!12239-129G7;0.000727682!12240-129G8;0.15137!10416-106C2;0.0438821!10801-110I9;0.200835!10766-110F1;0.609954!10824-111C5;0.717614!10825-111C6;0.490288!10826-111C7;0.561791!10454-106G4;0.57711!10409-106B4;0.310544!10638-108I8;0.604402!10636-108I6;0.704117!10513-107D9;0.188374!10420-106C6;0.934199!10082-102B1;0.192896!10014-101C5;0.161464!10070-101I7;0.511251!10452-106G2;0.739659!10453-106G3;0.144519!10449-106F8;0.0969934!10042-101F6;0.134477!10069-101I6;0.24283!10193-103E4;0.713167!10631-108I1;0.0312268!10438-106E6;0.234641!10488-107B2;0.617858!10196-103E7;0.63376!10071-101I8;0.93704!10071-101I8;0.746187!10041-101F5;0.0438899!10451-106G1;0.747385!10450-106F9;0.608199!10604-108F1;0.165813!10605-108F2;0.375433!10606-108F3;0.0969071!10603-108E9;0.428713!10497-107C2;0.437023!10448-106F7;0.54839!10643-109A4;0.329909!10426-106D3;0.192777!10431-106D8;0.422174!10197-103E8;0.179164!10443-106F2;0.66445!10815-111B5;0.610951!10816-111B6;0.817189!10817-111B7;0.823099!10015-101C6;0.954846!10410-106B5;0.565451!10054-101G9;0.954885!10758-110E2;0.384355!10711-109H9;0.24961!10040-101F4;0.274077!10470-106I2;0.0596639!10415-106C1;0.514313!10198-103E9;0.3589!10614-108G2;0.31585!10612-108F9;0.33467!10549-107H9;0.670925!10615-108G3;0.0461738!10487-107B1;0.017694!10433-106E1;0.773808!10688-109F4;0.545164!10444-106F3;0.364982!10444-106F3;0.128694!10485-107A8;0.137027!10413-106B8;0.930439!10175-103C4;0.000816097!10161-103A8;0.065476!12131-128D7;0.127196!10624-108H3;0.790891!10712-109I1;0.0444789!10205-103F7;0.396954!10206-103F8;0.500457!10207-103F9;0.774084!10050-101G5;0.937392!10051-101G6;0.619185!10016-101C7;0.721273!10046-101G1;0.665487!10778-110G4;0.49731!10633-108I3;0.225128!10818-111B8;0.724468!10819-111B9;0.486579!10820-111C1;0.565572!10484-107A7;0.60302!10808-111A7;0.145625!10169-103B7;0.39653!10153-102I9;0.0658644!13425-144D5;0.0724106!13433-144E4;0.88426!13437-144E8;0.771226!11904-125F5;0.606789!11905-125F6;0.181433!10039-101F3;0.770218!10791-110H8;0.0926036!10017-101C8;0.518315!10045-101F9;0.0825371!10509-107D5;0.223537!10839-111E2;0.419429!10692-109F8;0.830466!10079-102A7;0.836405!10078-102A6;0.906812!10721-110A1;0.374067!10569-108B2;0.575574!10570-108B3;0.163748!10571-108B4;0.197844!10647-109A8;0.341861!10752-110D5;0.419579!10782-110G8;0.745397!10726-110A6;0.0306737!10018-101C9;0.502488!10086-102B5;0.318403!10182-103D2;0.199251!10165-103B3;0.0208559!10499-107C4;0.0519504!10408-106B3;0.638378!10019-101D1;0.288816!10068-101I5;0.2545!10075-102A3;0.76315!10077-102A5;0.180884!10727-110A7;0.182357!10775-110G1;0.740997!10412-106B7;0.186867!12231-129F8;0.640678!12232-129F9;0.479054!12233-129G1;0.538997!12234-129G2;0.610938!10414-106B9;0.873168!10170-103B8;0.763636!10183-103D3;0.0236068!10150-102I6;0.0480623!10174-103C3;0.0561435!10155-103A2;0.0749428!10038-101F2;0.0870848!10838-111E1;0.119099!10759-110E3;0.156399!10514-107E1;0.140398!10465-106H6;0.23227!10691-109F7;0.817311!10843-111E6;0.0596496!10844-111E7;0.076173!11747-123G1;0.0574247!11748-123G2;0.91084!11749-123G3;0.318573!11750-123G4;0.959744!11751-123G5;0.319135!11840-124H4;0.360525!11752-123G6;0.629612!11753-123G7;0.310405!11754-123G8;0.273747!11755-123G9;0.532553!11756-123H1;0.180855!11833-124G6;0.17162!11760-123H5;0.0493391!11836-124G9;0.711107!11758-123H3;0.903958!11835-124G8;0.523687!11762-123H7;0.768721!11838-124H2;0.901092!11757-123H2;0.80322!11759-123H4;0.308259!11761-123H6;0.383501!11842-124H6;0.41809!11837-124H1;0.559892!10568-108B1;0.946042!13230-141I8;0.239236!13231-141I9;0.931771!10696-109G3;0.794281!10493-107B7;0.57953!10494-107B8;0.676364!10850-111F4;0.762967!10851-111F5;0.666843!10852-111F6;0.39125!10853-111F7;0.307245!10854-111F8;0.85964!10855-111F9;0.37566!10856-111G1;0.0365412!10847-111F1;0.468812!10846-111E9;0.501344!10848-111F2;0.508049!10845-111E8;0.664026!10857-111G2;0.982558!10858-111G3;0.640784!10156-103A3;0.196434!11901-125F2;0.0706474!11902-125F3;0.251469!11903-125F4;0.856421!10689-109F5;0.677524!10648-109A9;0.108758!10784-110H1;0.53732!10744-110C6;0.0797953!10772-110F7;0.869072!10474-106I6;0.685621!10600-108E6;0.431592!10684-109E9;0.083169!12226-129F3;0.134608!12227-129F4;0.168309!10508-107D4;0.887137!10539-107G8;0.0102897!10607-108F4;0.000714967!10555-107I6;0.125859!10774-110F9;0.007!10637-108I7;0.68766!10663-109C6;0.022184!10728-110A8;0.403402!10729-110A9;0.548692!10430-106D7;0.54139!10730-110B1;0.0976939!10813-111B3;0.0340061!10812-111B2;0.982451!10037-101F1;0.326703!10172-103C1;0.0717569!10163-103B1;0.0301347!10076-102A4;0.0633778!10073-102A1;0.0558009!10036-101E9;0.040304!10195-103E6;0.0881344!10277-104E7;0.0682072!10434-106E2;0.316459!10550-107I1;0.932335!10545-107H5;0.809302!10544-107H4;0.771341!10704-109H2;0.616096!10510-107D6;0.972063!10558-107I9;0.14575!10020-101D2;0.360714!10732-110B3;0.974999!10049-101G4;0.822798!10698-109G5;0.426076!10437-106E5;0.741653!10417-106C3;0.712806!10035-101E8;0.15554!10171-103B9;0.0735699!10157-103A4;0.0525742!10034-101E7;0.0434906!10072-101I9;0.0840341!10199-103F1;0.0344149!10200-103F2;0.0627042!10697-109G4;0.911601!10723-110A3;0.213201!10179-103C8;0.964899!10160-103A7;0.00508346!10180-103C9;0.00706969!10162-103A9;0.130733!10021-101D3;0.120166!10840-111E3;0.100249!10706-109H4;0.259136!10033-101E6;0.16386!10032-101E5;0.0275458!10490-107B4;0.0887627!10439-106E7;0.840612!10022-101D4;0.21381!10176-103C5;0.954737!10469-106I1;0.0267506!10067-101I4;0.277817!10411-106B6;0.384899!10471-106I3;0.631148!10030-101E3;0.360472!10475-106I7;0.525788!10787-110H4;0.105121!10477-106I9;0.317226!10695-109G2;0.162159!11771-123I7;0.948488!11772-123I8;0.912167!11773-123I9;0.792633!10093-102C3;0.823036!10442-106F1;0.11773!10442-106F1;0.0885598!10201-103F3;0.0549179!10639-108I9;0.722178!11843-124H7;0.63331!11841-124H5;0.250364!10693-109F9;0.859511!10436-106E4;0.048491!10483-107A6;0.22491!10282-104F3;0.0291656!10023-101D5;0.443348!10066-101I3;0.811363!10065-101I2;0.571638!10800-110I8;0.982975!10610-108F7;0.158232!10841-111E4;0.524796!10541-107H1;0.347326!10842-111E5;0.33338!10562-108A4;0.0343305!10024-101D6;0.342869!10064-101I1;0.274613!10609-108F6;0.473971!10048-101G3;0.941037!10781-110G7;0.775361!10181-103D1;0.446323!10159-103A6;0.0409566!10056-101H2;0.0368502!10737-110B8;0.083569!10025-101D7;0.541107!10044-101F8;0.181847!10424-106D1;0.176095!10463-106H4;0.0830004!10616-108G4;0.61679!10486-107A9;0.912375!10062-101H8;0.825913!10202-103F4;0.837161!10158-103A5;0.175679!10441-106E9;0.196339!10031-101E4;0.146945!10063-101H9;0.162249!10063-101H9;0.0272457!11763-123H8;0.769936!11765-123I1;0.869651!11768-123I4;0.126768!10807-111A6;0.381865!10790-110H7;0.609542!10798-110I6;0.720499!10786-110H3;0.94189!10591-108D6;0.764788!10593-108D8;0.33539!10590-108D5;0.145758!10026-101D8;0.817898!10096-102C6;0.358463!10168-103B6;0.581719!10154-103A1;0.0279825!10209-103G2;0.068634!10061-101H7;0.747851!10027-101D9;0.521813!10043-101F7;0.471717!10783-110G9;0.647756!10028-101E1;0.509309!10060-101H6;0.219521!10203-103F5;0.773707!10059-101H5;0.669767!10047-101G2;0.926223!10029-101E2;0.247861!10058-101H4;0.370192!10418-106C4;0.827674!10492-107B6;0.231801!10694-109G1;0.535338!10797-110I5;0.238146!10057-101H3;0.803456!10100-102D1;0.722738!10055-101H1;0.945204!10204-103F6;0.99581!10191-103E2;0.885834!10563-108A5;0.870706
|name=PURA_f1
|name=PURA_f1
|tomtom_result=SP1#MA0079.2;-7;4.09809e-06;0.00195069;0.00387568;10;GGAAGGGGGGGGCAGGG;GGGGGCGGGG;-!Pax4#MA0068.1;1;1.60612e-05;0.00764514;0.00759478;17;GGAAGGGGGGGGCAGGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!SP1#MA0079.2;-8;6.80813e-05;0.0324067;0.0214622;9;GGAAGGGGGGGGCAGGG;GGGGCGGGGT;+!btd#MA0443.1;-6;0.000164852;0.0784695;0.0389763;10;GGAAGGGGGGGGCAGGG;AGGGGGCGGA;+!RREB1#MA0073.1;1;0.000263395;0.125376;0.0498201;17;GGAAGGGGGGGGCAGGG;TGGGGGGGGGTGGTTTGGGG;-!Macho-1#MA0118.1;-5;0.000447651;0.213082;0.0705594;9;GGAAGGGGGGGGCAGGG;TGGGGGGTC;+!Klf4#MA0039.2;-8;0.00075216;0.358028;0.10162;9;GGAAGGGGGGGGCAGGG;TGGGTGGGGC;+!YGR067C#MA0425.1;0;0.000976453;0.464792;0.115432;14;GGAAGGGGGGGGCAGGG;TGAAAAAGTGGGGT;-!abi4#MA0123.1;-7;0.00349157;1.66199;0.366897;10;GGAAGGGGGGGGCAGGG;GGGGGCACCG;-!En1#MA0027.1;-2;0.00401689;1.91204;0.379888;11;GGAAGGGGGGGGCAGGG;AAGTAGTGCCC;+!Pax5#MA0014.1;0;0.00471533;2.2445;0.405402;17;GGAAGGGGGGGGCAGGG;GGAGCACTGAAGCGTAACCG;+!Egr1#MA0162.1;-4;0.00604315;2.87654;0.432981;11;GGAAGGGGGGGGCAGGG;TGCGTGGGCGT;+!NDT80#MA0343.1;3;0.00666461;3.17235;0.432981;17;GGAAGGGGGGGGCAGGG;TTGCGTTTTTGTGGCCGGAAA;-!PPARG::RXRA#MA0065.2;-6;0.00700507;3.33441;0.432981;11;GGAAGGGGGGGGCAGGG;GTAGGGCAAAGGTCA;+!ESR1#MA0112.2;1;0.00704223;3.3521;0.432981;17;GGAAGGGGGGGGCAGGG;AGGTCAGGGTGACCTGGGCC;-!MZF1_5-13#MA0057.1;-1;0.00742687;3.53519;0.432981;10;GGAAGGGGGGGGCAGGG;GGAGGGGGAA;+!CRZ1#MA0285.1;-8;0.00778307;3.70474;0.432981;9;GGAAGGGGGGGGCAGGG;GTGGCTTAG;-!PHD1#MA0355.1;-7;0.0112612;5.36031;0.591667;10;GGAAGGGGGGGGCAGGG;TGCTGCAGGT;-!Tal1::Gata1#MA0140.1;-4;0.0125236;5.96124;0.623365;13;GGAAGGGGGGGGCAGGG;CTGGTGGGGACAGATAAG;+!ESR1#MA0112.2;-7;0.0154663;7.36194;0.720385;10;GGAAGGGGGGGGCAGGG;GGGGTCACGGTGACCTGG;-!CHA4#MA0283.1;-10;0.0167425;7.96944;0.720385;7;GGAAGGGGGGGGCAGGG;GGCGGAGA;+!MIG2#MA0338.1;-10;0.0171142;8.14634;0.720385;7;GGAAGGGGGGGGCAGGG;TGCGGGG;-!Zfx#MA0146.1;-7;0.0182892;8.70566;0.720385;10;GGAAGGGGGGGGCAGGG;GGGGCCGAGGCCTG;+!MIG3#MA0339.1;-10;0.0194117;9.23996;0.720385;7;GGAAGGGGGGGGCAGGG;TGCGGGG;-!hkb#MA0450.1;-8;0.0195543;9.30784;0.720385;9;GGAAGGGGGGGGCAGGG;GGGGCGTGA;+!usp#MA0016.1;-7;0.0198048;9.42711;0.720385;10;GGAAGGGGGGGGCAGGG;GGGGTCACGG;+
}}
}}

Latest revision as of 12:12, 7 September 2012

Full Name: PURA_f1

Motif matrix
POACGT
12.0681818181818171.14898989898989928.6338383838383821.1489898989898992
21.96969696969696280.787878787878787810.2424242424242440.0
36.69696969696969550.01.96969696969696284.333333333333329
45.5151515151515122.49494949494949573.93939393939393861.0505050505050504
50.91919191919191910.06.69696969696969555.383838383838381
60.91919191919191911.8383838383838336.0404040404040454.202020202020199
70.01.96969696969696288.1414141414141382.8888888888888857
81.18181818181818170.09.9797979797979831.838383838383833
92.7575757575757561.96969696969696284.2020202020201994.070707070707069
102.2323232323232360.07.6161616161616183.151515151515146
110.00.010.5050505050505032.4949494949494957
120.91919191919191912.88888888888888577.8787878787878771.313131313131313
132.10101010101010578.929292929292931.96969696969696280.0
145.6464646464646423.0202020202020164.3333333333333290.0
150.91919191919191910.06.8282828282828245.252525252525252
164.0707070707070690.08.929292929292930.0
170.459595959595958841.3787878787878789.5202020202020171.6414141414141379

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SP1#MA0079.2-74.09809e-060.001950690.0038756810GGAAGGGGGGGGCAGGGGGGGGCGGGG-
Pax4#MA0068.111.60612e-050.007645140.0075947817GGAAGGGGGGGGCAGGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
SP1#MA0079.2-86.80813e-050.03240670.02146229GGAAGGGGGGGGCAGGGGGGGCGGGGT+
btd#MA0443.1-60.0001648520.07846950.038976310GGAAGGGGGGGGCAGGGAGGGGGCGGA+
RREB1#MA0073.110.0002633950.1253760.049820117GGAAGGGGGGGGCAGGGTGGGGGGGGGTGGTTTGGGG-
Macho-1#MA0118.1-50.0004476510.2130820.07055949GGAAGGGGGGGGCAGGGTGGGGGGTC+
Klf4#MA0039.2-80.000752160.3580280.101629GGAAGGGGGGGGCAGGGTGGGTGGGGC+
YGR067C#MA0425.100.0009764530.4647920.11543214GGAAGGGGGGGGCAGGGTGAAAAAGTGGGGT-
abi4#MA0123.1-70.003491571.661990.36689710GGAAGGGGGGGGCAGGGGGGGGCACCG-
En1#MA0027.1-20.004016891.912040.37988811GGAAGGGGGGGGCAGGGAAGTAGTGCCC+
Pax5#MA0014.100.004715332.24450.40540217GGAAGGGGGGGGCAGGGGGAGCACTGAAGCGTAACCG+
Egr1#MA0162.1-40.006043152.876540.43298111GGAAGGGGGGGGCAGGGTGCGTGGGCGT+
NDT80#MA0343.130.006664613.172350.43298117GGAAGGGGGGGGCAGGGTTGCGTTTTTGTGGCCGGAAA-
PPARG::RXRA#MA0065.2-60.007005073.334410.43298111GGAAGGGGGGGGCAGGGGTAGGGCAAAGGTCA+
ESR1#MA0112.210.007042233.35210.43298117GGAAGGGGGGGGCAGGGAGGTCAGGGTGACCTGGGCC-
MZF1_5-13#MA0057.1-10.007426873.535190.43298110GGAAGGGGGGGGCAGGGGGAGGGGGAA+
CRZ1#MA0285.1-80.007783073.704740.4329819GGAAGGGGGGGGCAGGGGTGGCTTAG-
PHD1#MA0355.1-70.01126125.360310.59166710GGAAGGGGGGGGCAGGGTGCTGCAGGT-
Tal1::Gata1#MA0140.1-40.01252365.961240.62336513GGAAGGGGGGGGCAGGGCTGGTGGGGACAGATAAG+
ESR1#MA0112.2-70.01546637.361940.72038510GGAAGGGGGGGGCAGGGGGGGTCACGGTGACCTGG-
CHA4#MA0283.1-100.01674257.969440.7203857GGAAGGGGGGGGCAGGGGGCGGAGA+
MIG2#MA0338.1-100.01711428.146340.7203857GGAAGGGGGGGGCAGGGTGCGGGG-
Zfx#MA0146.1-70.01828928.705660.72038510GGAAGGGGGGGGCAGGGGGGGCCGAGGCCTG+
MIG3#MA0339.1-100.01941179.239960.7203857GGAAGGGGGGGGCAGGGTGCGGGG-
hkb#MA0450.1-80.01955439.307840.7203859GGAAGGGGGGGGCAGGGGGGGCGTGA+
usp#MA0016.1-70.01980489.427110.72038510GGAAGGGGGGGGCAGGGGGGGTCACGG+
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