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MacroAPE 1083:GGACCCCCTA,motif709: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;30.696;90.809;1125.52;31.975!2;46.044;52.439;1107.614;72.903!3;1044.943;69.066;78.019;86.972!4;67.787;1029.595;112.552;69.066!5;72.903;1000....")
 
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-109I6;0.00341858!10455-106G5;0.0197364!10534-107G3;0.71786!10429-106D6;0.493415!10464-106H5;0.339329!10827-111C8;0.56011!10789-110H6;0.750666!10828-111C9;0.525994!10788-110H5;0.961943!10792-110H9;0.749025!10765-110E9;0.811605!10829-111D1;0.769859!10830-111D2;0.778484!10831-111D3;0.624728!10832-111D4;0.802707!10833-111D5;0.776489!10764-110E8;0.708733!10770-110F5;0.611686!10399-106A3;0.822797!10400-106A4;0.761489!10405-106A9;0.764701!10834-111D6;0.681695!10835-111D7;0.976312!10836-111D8;0.241993!10837-111D9;0.0564997!10699-109G6;0.787971!10802-111A1;0.329969!10796-110I4;0.233996!10010-101C1;0.0911886!10810-111A9;0.0229474!10421-106C7;0.106101!10708-109H6;0.739174!12235-129G3;0.745961!12236-129G4;0.461097!12237-129G5;0.628599!10167-103B5;0.0465443!10151-102I7;0.683834!10428-106D5;0.657746!10795-110I3;0.0298127!10805-111A4;0.610483!10052-101G7;0.0213566!10189-103D9;0.2461!10589-108D4;0.0519781!10425-106D2;0.0308106!10427-106D4;0.0330565!10702-109G9;0.354796!10432-106D9;0.0268213!10496-107C1;0.034193!10718-109I7;0.0120131!10011-101C2;0.750002!10053-101G8;0.20823!10686-109F2;0.507424!10084-102B3;0.829797!10012-101C3;0.988194!10085-102B4;0.980416!10482-107A5;0.454826!10419-106C5;0.00943861!10080-102A8;0.00782137!10760-110E4;0.534323!10709-109H7;0.0265862!10710-109H8;0.0350028!10703-109H1;0.0302621!10719-109I8;0.177739!10642-109A3;0.0501105!10177-103C6;0.101856!10164-103B2;0.968309!10173-103C2;0.819485!10166-103B4;0.300427!10083-102B2;0.381917!10188-103D8;0.474224!10552-107I3;0.862758!10553-107I4;0.190189!10013-101C4;0.000936317!10536-107G5;0.0829406!10618-108G6;0.652994!10423-106C9;0.0794939!10785-110H2;0.171796!12238-129G6;0.217853!12239-129G7;0.217258!12240-129G8;0.0213377!10416-106C2;0.140164!10801-110I9;0.699315!10766-110F1;0.582343!10824-111C5;0.681954!10825-111C6;0.576118!10826-111C7;0.570239!10454-106G4;0.506876!10409-106B4;0.387002!10638-108I8;0.643664!10636-108I6;0.174597!10513-107D9;0.0478644!10420-106C6;0.0633098!10082-102B1;0.0947822!10014-101C5;0.534782!10070-101I7;0.18474!10452-106G2;0.0897526!10453-106G3;0.155873!10449-106F8;0.339988!10042-101F6;0.2937!10069-101I6;0.6318!10193-103E4;0.0297973!10631-108I1;0.94612!10438-106E6;0.548141!10488-107B2;0.0012738!10196-103E7;0.159384!10071-101I8;0.322937!10071-101I8;0.0865643!10041-101F5;0.402277!10451-106G1;0.0535713!10450-106F9;0.020311!10604-108F1;0.0415356!10605-108F2;0.0123975!10606-108F3;0.00744683!10603-108E9;0.00618514!10497-107C2;0.0172238!10448-106F7;0.0840058!10643-109A4;0.227272!10426-106D3;0.00378111!10431-106D8;0.00398672!10197-103E8;0.0562513!10443-106F2;0.0342801!10815-111B5;0.00979176!10816-111B6;0.118562!10817-111B7;0.0576456!10015-101C6;0.0940634!10410-106B5;0.349337!10054-101G9;0.0715122!10758-110E2;0.190898!10711-109H9;0.0516045!10040-101F4;0.185556!10470-106I2;0.671712!10415-106C1;0.0114315!10198-103E9;0.311069!10614-108G2;0.122649!10612-108F9;0.061984!10549-107H9;0.0172507!10615-108G3;0.065587!10487-107B1;0.0145804!10433-106E1;0.146457!10688-109F4;0.0148517!10444-106F3;0.000167943!10444-106F3;0.097036!10485-107A8;0.0645708!10413-106B8;0.191604!10175-103C4;0.523564!10161-103A8;0.984258!12131-128D7;0.942636!10624-108H3;0.0861021!10712-109I1;0.205449!10205-103F7;0.871098!10206-103F8;0.0859207!10207-103F9;0.182747!10050-101G5;0.479448!10051-101G6;0.118107!10016-101C7;0.139942!10046-101G1;0.15629!10778-110G4;0.252407!10633-108I3;0.292579!10818-111B8;0.0467983!10819-111B9;0.151934!10820-111C1;0.161184!10484-107A7;0.132967!10808-111A7;0.00275872!10169-103B7;0.379978!10153-102I9;0.841058!13425-144D5;0.865181!13433-144E4;0.950204!13437-144E8;0.829018!11904-125F5;0.697152!11905-125F6;0.180671!10039-101F3;0.0337391!10791-110H8;0.69859!10017-101C8;0.00806871!10045-101F9;0.078471!10509-107D5;0.150294!10839-111E2;0.0535345!10692-109F8;0.313826!10079-102A7;0.00345038!10078-102A6;0.0615689!10721-110A1;0.100054!10569-108B2;0.154362!10570-108B3;0.0372927!10571-108B4;0.0465597!10647-109A8;0.0471933!10752-110D5;0.149359!10782-110G8;0.332654!10726-110A6;0.105427!10018-101C9;0.257334!10086-102B5;0.0302431!10182-103D2;0.0355627!10165-103B3;0.950562!10499-107C4;0.903116!10408-106B3;0.0744553!10019-101D1;0.00254647!10068-101I5;0.315563!10075-102A3;0.234542!10077-102A5;0.461258!10727-110A7;0.0111648!10775-110G1;0.459182!10412-106B7;0.18719!12231-129F8;2.8999e-05!12232-129F9;0.884116!12233-129G1;0.387663!12234-129G2;0.391736!10414-106B9;0.54601!10170-103B8;0.00550726!10183-103D3;0.523874!10150-102I6;0.758238!10174-103C3;0.74055!10155-103A2;0.68134!10038-101F2;0.714438!10838-111E1;0.653804!10759-110E3;0.0517785!10514-107E1;0.0226717!10465-106H6;0.0459399!10691-109F7;0.120605!10843-111E6;0.00780734!10844-111E7;0.0291755!11747-123G1;0.0349066!11748-123G2;0.00919373!11749-123G3;0.0132316!11750-123G4;0.0622843!11751-123G5;0.0287867!11840-124H4;0.00875846!11752-123G6;0.00640165!11753-123G7;0.0702359!11754-123G8;0.0336343!11755-123G9;0.00756189!11756-123H1;0.0228602!11833-124G6;0.0348016!11760-123H5;0.0462325!11836-124G9;0.0611124!11758-123H3;0.149995!11835-124G8;0.0641667!11762-123H7;0.0764999!11838-124H2;0.0336868!11757-123H2;0.208178!11759-123H4;0.173301!11761-123H6;0.00917318!11842-124H6;0.286215!11837-124H1;0.0774929!10568-108B1;0.0280766!13230-141I8;0.0433673!13231-141I9;0.00440148!10696-109G3;0.008651!10493-107B7;0.881845!10494-107B8;0.00597159!10850-111F4;0.00729816!10851-111F5;0.0140606!10852-111F6;0.471412!10853-111F7;0.936089!10854-111F8;0.261205!10855-111F9;0.124898!10856-111G1;0.588537!10847-111F1;0.783262!10846-111E9;0.155156!10848-111F2;0.102454!10845-111E8;0.158777!10857-111G2;0.202281!10858-111G3;0.593908!10156-103A3;0.243227!11901-125F2;0.734603!11902-125F3;0.195572!11903-125F4;0.0661943!10689-109F5;0.141211!10648-109A9;0.964797!10784-110H1;0.332608!10744-110C6;0.00112442!10772-110F7;0.412004!10474-106I6;0.942148!10600-108E6;0.70537!10684-109E9;0.18471!12226-129F3;0.498336!12227-129F4;0.00560292!10508-107D4;0.0426787!10539-107G8;0.146777!10607-108F4;0.0363814!10555-107I6;0.0323607!10774-110F9;0.280239!10637-108I7;0.183958!10663-109C6;0.145231!10728-110A8;0.0114002!10729-110A9;0.0128572!10430-106D7;0.298848!10730-110B1;0.212315!10813-111B3;0.156434!10812-111B2;0.0183389!10037-101F1;0.00982654!10172-103C1;0.780614!10163-103B1;0.697057!10076-102A4;0.710088!10073-102A1;0.666604!10036-101E9;0.269002!10195-103E6;0.815036!10277-104E7;0.847089!10434-106E2;0.65533!10550-107I1;0.00182815!10545-107H5;0.0147704!10544-107H4;0.0508997!10704-109H2;0.00560197!10510-107D6;0.484875!10558-107I9;0.0402222!10020-101D2;0.850194!10732-110B3;0.102677!10049-101G4;0.285908!10698-109G5;0.859516!10437-106E5;0.0495816!10417-106C3;0.0882466!10035-101E8;0.0513559!10171-103B9;0.748792!10157-103A4;0.806649!10034-101E7;0.718254!10072-101I9;0.752204!10199-103F1;0.308996!10200-103F2;0.460326!10697-109G4;0.0807954!10723-110A3;0.247665!10179-103C8;1.18287e-05!10160-103A7;0.359272!10180-103C9;0.388004!10162-103A9;0.0750919!10021-101D3;0.11083!10840-111E3;0.0276829!10706-109H4;0.409177!10033-101E6;0.0488917!10032-101E5;0.98814!10490-107B4;0.744118!10439-106E7;0.0255914!10022-101D4;0.0349847!10176-103C5;0.1745!10469-106I1;0.738654!10067-101I4;0.00541508!10411-106B6;0.267162!10471-106I3;0.737551!10030-101E3;0.814842!10475-106I7;0.435409!10787-110H4;0.0797108!10477-106I9;0.0520937!10695-109G2;0.085567!11771-123I7;0.0937803!11772-123I8;0.0183902!11773-123I9;0.00876331!10093-102C3;0.00540451!10442-106F1;0.434199!10442-106F1;0.0837241!10201-103F3;0.0818074!10639-108I9;0.301785!11843-124H7;3.51355e-06!11841-124H5;0.091695!10693-109F9;0.494617!10436-106E4;0.0273196!10483-107A6;0.305604!10282-104F3;0.152671!10023-101D5;0.380229!10066-101I3;0.129552!10065-101I2;0.0155915!10800-110I8;0.0537012!10610-108F7;0.000556301!10841-111E4;0.101216!10541-107H1;0.133154!10842-111E5;0.0138647!10562-108A4;0.241798!10024-101D6;0.00795072!10064-101I1;0.496786!10609-108F6;0.0687682!10048-101G3;0.00326715!10781-110G7;0.411784!10181-103D1;0.00225805!10159-103A6;0.794984!10056-101H2;0.898993!10737-110B8;0.344711!10025-101D7;0.137905!10044-101F8;0.0589456!10424-106D1;0.0905387!10463-106H4;0.203553!10616-108G4;0.000132854!10486-107A9;0.00856457!10062-101H8;0.0453917!10202-103F4;0.495305!10158-103A5;0.339473!10441-106E9;0.780921!10031-101E4;0.0725548!10063-101H9;0.895117!10063-101H9;0.30813!11763-123H8;0.0834191!11765-123I1;0.00145315!11768-123I4;0.00741499!10807-111A6;0.00200552!10790-110H7;0.0856366!10798-110I6;0.398376!10786-110H3;0.585231!10591-108D6;0.104133!10593-108D8;0.335647!10590-108D5;0.141632!10026-101D8;0.207528!10096-102C6;0.00715959!10168-103B6;0.87138!10154-103A1;0.962761!10209-103G2;0.995539!10061-101H7;0.0996752!10027-101D9;0.0736809!10043-101F7;0.648438!10783-110G9;0.486635!10028-101E1;0.541692!10060-101H6;0.68079!10203-103F5;0.308361!10059-101H5;0.143614!10047-101G2;0.0412867!10029-101E2;0.256787!10058-101H4;0.148535!10418-106C4;0.114881!10492-107B6;0.0133257!10694-109G1;0.0364774!10797-110I5;0.868377!10057-101H3;0.0741678!10100-102D1;0.0428064!10055-101H1;0.153748!10204-103F6;0.130091!10191-103E2;0.818237!10563-108A5;0.0220029
|name=GGACCCCCTA,motif709,CNhs11974,T:1279.0(23.54%),B:13074.6(17.49%),P:1e-28
|name=GGACCCCCTA,motif709,CNhs11974,T:1279.0(23.54%),B:13074.6(17.49%),P:1e-28
|tomtom_result=Macho-1#MA0118.1;-1;0.00103336;0.491879;0.367795;9;GGACCCCCTA;GAACCCCCA;-!RGM1#MA0366.1;-4;0.00104022;0.495147;0.367795;5;GGACCCCCTA;CCCCT;-!MSN4#MA0342.1;-4;0.00115931;0.551833;0.367795;5;GGACCCCCTA;CCCCT;-!MSN2#MA0341.1;-4;0.00198788;0.946229;0.472995;5;GGACCCCCTA;CCCCT;-!opa#MA0456.1;-1;0.00276174;1.31459;0.525702;9;GGACCCCCTA;GACCCCCCGCTG;+!NFKB1#MA0105.1;3;0.00576958;2.74632;0.711417;8;GGACCCCCTA;GGGGAATCCCC;-!MZF1_5-13#MA0057.1;-1;0.0059495;2.83196;0.711417;9;GGACCCCCTA;TTCCCCCTAC;-!YER130C#MA0423.1;-3;0.00660558;3.14426;0.711417;7;GGACCCCCTA;ACCCCTATT;+!RPH1#MA0372.1;-3;0.00672728;3.20219;0.711417;7;GGACCCCCTA;ACCCCTAA;+!Zfp423#MA0116.1;-1;0.00860094;4.09405;0.818602;9;GGACCCCCTA;GCACCCCTGGGTGCC;-!GIS1#MA0306.1;-3;0.0108124;5.14671;0.935528;7;GGACCCCCTA;ACCCCTAAA;+!CTCF#MA0139.1;2;0.014148;6.73446;0.999747;10;GGACCCCCTA;TAGCGCCCCCTGGTGGCCA;-!AFT2#MA0270.1;-1;0.0184825;8.79769;0.999747;8;GGACCCCCTA;CACACCCC;+
}}
}}

Latest revision as of 12:19, 7 September 2012

Full Name: GGACCCCCTA,motif709,CNhs11974,T:1279.0(23.54%),B:13074.6(17.49%),P:1e-28

Motif matrix
POACGT
130.69690.8091125.5231.975
246.04452.4391107.61472.903
31044.94369.06678.01986.972
467.7871029.595112.55269.066
572.9031000.178115.1190.809
676.74963.087172.66566.508
7106.1571055.17544.76572.903
8116.3891006.57394.64661.392
9101.04174.182106.157997.62
10908.09121.505175.22374.182

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Macho-1#MA0118.1-10.001033360.4918790.3677959GGACCCCCTAGAACCCCCA-
RGM1#MA0366.1-40.001040220.4951470.3677955GGACCCCCTACCCCT-
MSN4#MA0342.1-40.001159310.5518330.3677955GGACCCCCTACCCCT-
MSN2#MA0341.1-40.001987880.9462290.4729955GGACCCCCTACCCCT-
opa#MA0456.1-10.002761741.314590.5257029GGACCCCCTAGACCCCCCGCTG+
NFKB1#MA0105.130.005769582.746320.7114178GGACCCCCTAGGGGAATCCCC-
MZF1_5-13#MA0057.1-10.00594952.831960.7114179GGACCCCCTATTCCCCCTAC-
YER130C#MA0423.1-30.006605583.144260.7114177GGACCCCCTAACCCCTATT+
RPH1#MA0372.1-30.006727283.202190.7114177GGACCCCCTAACCCCTAA+
Zfp423#MA0116.1-10.008600944.094050.8186029GGACCCCCTAGCACCCCTGGGTGCC-
GIS1#MA0306.1-30.01081245.146710.9355287GGACCCCCTAACCCCTAAA+
CTCF#MA0139.120.0141486.734460.99974710GGACCCCCTATAGCGCCCCCTGGTGGCCA-
AFT2#MA0270.1-10.01848258.797690.9997478GGACCCCCTACACACCCC+
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