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MacroAPE 1083:Motif CNGCCA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;548;0;0!02;0;0;0;548!03;0;0;548;0!04;0;548;0;0!05;0;548;0;0!06;548;0;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.496299!11327-117E4;...")
 
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4-107B8;0.213745!10850-111F4;0.946687!10851-111F5;0.213997!10852-111F6;0.966134!10853-111F7;0.858225!10854-111F8;0.616782!10855-111F9;0.813518!10856-111G1;0.717231!10847-111F1;0.682176!10846-111E9;0.994156!10848-111F2;0.644247!10845-111E8;0.987367!10857-111G2;0.215467!10858-111G3;0.669024!10156-103A3;0.909088!11901-125F2;0.734383!11902-125F3;0.76979!11903-125F4;0.665913!10689-109F5;0.638078!10648-109A9;0.248037!10784-110H1;0.940047!10744-110C6;0.181428!10772-110F7;0.36904!10474-106I6;0.356098!10600-108E6;0.394963!10684-109E9;0.697861!12226-129F3;0.680575!12227-129F4;0.409522!10508-107D4;0.776686!10539-107G8;0.506084!10607-108F4;0.873069!10555-107I6;0.471863!10774-110F9;0.300696!10637-108I7;0.443813!10663-109C6;0.635906!10728-110A8;0.357243!10729-110A9;0.550141!10430-106D7;0.290729!10730-110B1;0.572111!10813-111B3;0.337996!10812-111B2;0.601333!10037-101F1;0.963253!10172-103C1;0.758428!10163-103B1;0.809824!10076-102A4;0.687308!10073-102A1;0.644965!10036-101E9;0.889471!10195-103E6;0.630807!10277-104E7;0.785057!10434-106E2;0.661584!10550-107I1;0.501761!10545-107H5;0.297949!10544-107H4;0.750916!10704-109H2;0.571266!10510-107D6;0.7054!10558-107I9;0.152313!10020-101D2;0.636225!10732-110B3;0.21966!10049-101G4;0.804028!10698-109G5;0.62947!10437-106E5;0.722158!10417-106C3;0.942669!10035-101E8;0.327583!10171-103B9;0.680754!10157-103A4;0.554115!10034-101E7;0.74701!10072-101I9;0.65885!10199-103F1;0.992291!10200-103F2;0.159892!10697-109G4;0.168548!10723-110A3;0.510309!10179-103C8;0.62491!10160-103A7;0.807523!10180-103C9;0.906591!10162-103A9;0.822369!10021-101D3;0.830763!10840-111E3;0.426241!10706-109H4;0.885293!10033-101E6;0.277037!10032-101E5;0.663213!10490-107B4;0.66119!10439-106E7;0.250885!10022-101D4;0.133453!10176-103C5;0.206397!10469-106I1;0.56865!10067-101I4;0.356292!10411-106B6;0.850869!10471-106I3;0.947433!10030-101E3;0.0974536!10475-106I7;0.76137!10787-110H4;0.0634149!10477-106I9;0.945017!10695-109G2;0.755123!11771-123I7;0.917868!11772-123I8;0.670253!11773-123I9;0.904692!10093-102C3;0.356547!10442-106F1;0.210693!10442-106F1;0.946268!10201-103F3;0.909076!10639-108I9;0.22084!11843-124H7;0.896797!11841-124H5;0.261311!10693-109F9;0.254077!10436-106E4;0.401592!10483-107A6;0.81786!10282-104F3;0.627003!10023-101D5;0.359745!10066-101I3;0.26214!10065-101I2;0.65683!10800-110I8;0.235181!10610-108F7;0.146558!10841-111E4;0.128679!10541-107H1;0.134711!10842-111E5;0.405359!10562-108A4;0.109771!10024-101D6;0.25972!10064-101I1;0.324038!10609-108F6;0.385331!10048-101G3;0.415134!10781-110G7;0.189751!10181-103D1;0.404256!10159-103A6;0.797685!10056-101H2;0.737887!10737-110B8;0.985208!10025-101D7;0.274534!10044-101F8;0.176588!10424-106D1;0.264953!10463-106H4;0.606574!10616-108G4;0.348667!10486-107A9;0.50358!10062-101H8;0.364295!10202-103F4;0.446279!10158-103A5;0.237749!10441-106E9;0.75111!10031-101E4;0.31055!10063-101H9;0.691069!10063-101H9;0.905483!11763-123H8;0.300826!11765-123I1;0.229568!11768-123I4;0.253238!10807-111A6;0.144346!10790-110H7;0.208616!10798-110I6;0.273584!10786-110H3;0.198413!10591-108D6;0.236078!10593-108D8;0.233463!10590-108D5;0.204013!10026-101D8;0.130731!10096-102C6;0.24706!10168-103B6;0.751712!10154-103A1;0.503955!10209-103G2;0.770688!10061-101H7;0.254882!10027-101D9;0.234145!10043-101F7;0.663616!10783-110G9;0.515835!10028-101E1;0.881581!10060-101H6;0.0692921!10203-103F5;0.185676!10059-101H5;0.24059!10047-101G2;0.302725!10029-101E2;0.284482!10058-101H4;0.189384!10418-106C4;0.214337!10492-107B6;0.384095!10694-109G1;0.764349!10797-110I5;0.860391!10057-101H3;0.0307397!10100-102D1;0.181853!10055-101H1;0.0959777!10204-103F6;0.23457!10191-103E2;0.241829!10563-108A5;0.351959
|name=motif_CNGCCA
|name=motif_CNGCCA
|tomtom_result=TLX1::NFIC#MA0119.1;8;0.00198966;0.947079;0.739276;6;CTGCCA;TTGGCATGGTGCCA;-!achi#MA0207.1;0;0.00248061;1.18077;0.739276;6;CTGCCA;CTGTCA;-!NFIC#MA0161.1;-1;0.00300389;1.42985;0.739276;5;CTGCCA;TGCCAA;-!hth#MA0227.1;0;0.00357737;1.70283;0.739276;6;CTGCCA;CTGTCA;-!vis#MA0252.1;0;0.00388374;1.84866;0.739276;6;CTGCCA;CTGTCA;-!GCR1#MA0304.1;2;0.00763312;3.63337;0.999747;6;CTGCCA;GGCTTCCA;-!RIM101#MA0368.1;-1;0.00954831;4.545;0.999747;5;CTGCCA;CGCCAAG;+!TOS8#MA0408.1;0;0.0121977;5.80611;0.999747;6;CTGCCA;CTGTCAAA;+!INSM1#MA0155.1;6;0.0140551;6.69025;0.999747;6;CTGCCA;CGCCCCCTGACA;-!Hand1::Tcfe2a#MA0092.1;0;0.014999;7.13951;0.999747;6;CTGCCA;ATGCCAGACC;-!Lag1#MA0193.1;0;0.0154332;7.34621;0.999747;6;CTGCCA;CTACCAA;+!GCR2#MA0305.1;1;0.0159459;7.59027;0.999747;6;CTGCCA;GCTTCCT;+!RFX1#MA0365.1;2;0.020412;9.71613;0.999747;6;CTGCCA;GGTTGCTA;+
}}
}}

Latest revision as of 12:23, 7 September 2012

Full Name: motif_CNGCCA

Motif matrix
POACGT
01054800
02000548
03005480
04054800
05054800
06548000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TLX1::NFIC#MA0119.180.001989660.9470790.7392766CTGCCATTGGCATGGTGCCA-
achi#MA0207.100.002480611.180770.7392766CTGCCACTGTCA-
NFIC#MA0161.1-10.003003891.429850.7392765CTGCCATGCCAA-
hth#MA0227.100.003577371.702830.7392766CTGCCACTGTCA-
vis#MA0252.100.003883741.848660.7392766CTGCCACTGTCA-
GCR1#MA0304.120.007633123.633370.9997476CTGCCAGGCTTCCA-
RIM101#MA0368.1-10.009548314.5450.9997475CTGCCACGCCAAG+
TOS8#MA0408.100.01219775.806110.9997476CTGCCACTGTCAAA+
INSM1#MA0155.160.01405516.690250.9997476CTGCCACGCCCCCTGACA-
Hand1::Tcfe2a#MA0092.100.0149997.139510.9997476CTGCCAATGCCAGACC-
Lag1#MA0193.100.01543327.346210.9997476CTGCCACTACCAA+
GCR2#MA0305.110.01594597.590270.9997476CTGCCAGCTTCCT+
RFX1#MA0365.120.0204129.716130.9997476CTGCCAGGTTGCTA+
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