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MacroAPE 1083:GCTCCGCTC,motif508: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;63;143.325;1244.25;124.425!2;64.575;1327.725;55.125;127.575!3;179.55;92.925;138.6;1163.925!4;85.05;1269.45;140.175;80.325!5;111.825;1200.15;...")
 
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623!10597-108E3;0.794814!10717-109I6;0.365024!10455-106G5;0.557619!10534-107G3;0.0295528!10429-106D6;0.343012!10464-106H5;0.213373!10827-111C8;0.616616!10789-110H6;0.00303354!10828-111C9;0.00448902!10788-110H5;0.0024605!10792-110H9;0.109268!10765-110E9;0.00150156!10829-111D1;0.0227318!10830-111D2;0.0201069!10831-111D3;0.272822!10832-111D4;0.0151216!10833-111D5;0.00551945!10764-110E8;0.0169996!10770-110F5;0.561258!10399-106A3;0.0170355!10400-106A4;0.0331698!10405-106A9;0.0385796!10834-111D6;0.03881!10835-111D7;0.0194657!10836-111D8;0.0416168!10837-111D9;0.21189!10699-109G6;0.00138051!10802-111A1;0.00588062!10796-110I4;0.165109!10010-101C1;0.597157!10810-111A9;0.873988!10421-106C7;0.803441!10708-109H6;0.0153253!12235-129G3;0.823509!12236-129G4;0.217853!12237-129G5;0.160705!10167-103B5;0.534662!10151-102I7;0.00520336!10428-106D5;0.00617151!10795-110I3;0.309012!10805-111A4;0.00330667!10052-101G7;0.0946116!10189-103D9;0.353529!10589-108D4;0.856837!10425-106D2;0.373846!10427-106D4;0.10367!10702-109G9;0.21849!10432-106D9;0.914244!10496-107C1;0.707384!10718-109I7;0.97818!10011-101C2;0.00283193!10053-101G8;0.623133!10686-109F2;0.000842632!10084-102B3;0.636656!10012-101C3;0.00106715!10085-102B4;0.00267217!10482-107A5;0.00693568!10419-106C5;0.736521!10080-102A8;0.6745!10760-110E4;0.153711!10709-109H7;0.334997!10710-109H8;0.642304!10703-109H1;0.471026!10719-109I8;0.0505996!10642-109A3;0.218016!10177-103C6;0.0879708!10164-103B2;0.00101623!10173-103C2;0.00501511!10166-103B4;0.0277757!10083-102B2;0.0197583!10188-103D8;0.0058881!10552-107I3;0.00124898!10553-107I4;0.118212!10013-101C4;0.032435!10536-107G5;0.595719!10618-108G6;0.68429!10423-106C9;0.254916!10785-110H2;0.61219!12238-129G6;0.476774!12239-129G7;0.604857!12240-129G8;0.889989!10416-106C2;0.495363!10801-110I9;0.0133405!10766-110F1;0.00199911!10824-111C5;0.00211292!10825-111C6;0.0259347!10826-111C7;0.021493!10454-106G4;0.0230084!10409-106B4;0.00919745!10638-108I8;0.00514903!10636-108I6;0.842987!10513-107D9;0.999849!10420-106C6;0.514946!10082-102B1;0.589296!10014-101C5;0.113498!10070-101I7;0.602343!10452-106G2;0.425164!10453-106G3;0.556686!10449-106F8;0.469214!10042-101F6;0.555296!10069-101I6;0.00292708!10193-103E4;0.860358!10631-108I1;0.00392586!10438-106E6;0.0953603!10488-107B2;0.41423!10196-103E7;0.211801!10071-101I8;0.231246!10071-101I8;0.359311!10041-101F5;0.0188247!10451-106G1;0.713757!10450-106F9;0.99069!10604-108F1;0.69829!10605-108F2;0.33538!10606-108F3;0.760693!10603-108E9;0.421686!10497-107C2;0.716012!10448-106F7;0.879395!10643-109A4;0.974212!10426-106D3;0.0469041!10431-106D8;0.456911!10197-103E8;0.585898!10443-106F2;0.931729!10815-111B5;0.000443489!10816-111B6;0.166775!10817-111B7;0.271402!10015-101C6;0.225197!10410-106B5;0.608618!10054-101G9;0.810555!10758-110E2;0.17465!10711-109H9;0.947115!10040-101F4;0.238228!10470-106I2;0.0052527!10415-106C1;0.438232!10198-103E9;0.52387!10614-108G2;0.599614!10612-108F9;0.654666!10549-107H9;0.444807!10615-108G3;0.693123!10487-107B1;0.331235!10433-106E1;0.117626!10688-109F4;0.748713!10444-106F3;0.191692!10444-106F3;0.558631!10485-107A8;0.53612!10413-106B8;0.440496!10175-103C4;0.303695!10161-103A8;0.000296581!12131-128D7;0.00592226!10624-108H3;0.774891!10712-109I1;0.130963!10205-103F7;0.127117!10206-103F8;0.616357!10207-103F9;0.570392!10050-101G5;0.382261!10051-101G6;0.391282!10016-101C7;0.720898!10046-101G1;0.619419!10778-110G4;0.281643!10633-108I3;0.773038!10818-111B8;0.158697!10819-111B9;0.389452!10820-111C1;0.341442!10484-107A7;0.407068!10808-111A7;0.981658!10169-103B7;0.0854969!10153-102I9;0.00270728!13425-144D5;0.00487986!13433-144E4;2.44081e-07!13437-144E8;2.06652e-06!11904-125F5;4.32172e-06!11905-125F6;0.272991!10039-101F3;0.618911!10791-110H8;0.00425933!10017-101C8;0.502042!10045-101F9;0.738967!10509-107D5;0.0997105!10839-111E2;0.242267!10692-109F8;0.161458!10079-102A7;0.045258!10078-102A6;0.989955!10721-110A1;0.985636!10569-108B2;0.688842!10570-108B3;0.49987!10571-108B4;0.487718!10647-109A8;0.531427!10752-110D5;0.625731!10782-110G8;0.025343!10726-110A6;0.347729!10018-101C9;0.542404!10086-102B5;0.0768387!10182-103D2;0.611954!10165-103B3;0.000874369!10499-107C4;0.00408559!10408-106B3;0.520106!10019-101D1;0.130868!10068-101I5;0.62277!10075-102A3;0.452618!10077-102A5;0.623054!10727-110A7;0.130256!10775-110G1;0.0346156!10412-106B7;0.0593919!12231-129F8;0.62736!12232-129F9;0.401422!12233-129G1;0.479486!12234-129G2;0.71431!10414-106B9;0.785257!10170-103B8;0.519227!10183-103D3;0.00583736!10150-102I6;0.00627616!10174-103C3;0.0049337!10155-103A2;0.00226044!10038-101F2;0.00250002!10838-111E1;0.00156127!10759-110E3;0.169366!10514-107E1;0.151005!10465-106H6;0.297065!10691-109F7;0.223211!10843-111E6;0.655225!10844-111E7;0.221084!11747-123G1;0.0687727!11748-123G2;0.123068!11749-123G3;0.204283!11750-123G4;0.216814!11751-123G5;0.296667!11840-124H4;0.396635!11752-123G6;0.237865!11753-123G7;0.0583853!11754-123G8;0.342476!11755-123G9;0.135549!11756-123H1;0.0842489!11833-124G6;0.35337!11760-123H5;0.0457177!11836-124G9;0.536714!11758-123H3;0.170787!11835-124G8;0.505352!11762-123H7;0.667678!11838-124H2;0.882737!11757-123H2;0.732402!11759-123H4;0.126761!11761-123H6;0.217201!11842-124H6;0.809206!11837-124H1;0.330968!10568-108B1;0.73701!13230-141I8;0.109469!13231-141I9;0.548623!10696-109G3;0.536635!10493-107B7;0.384991!10494-107B8;0.506597!10850-111F4;0.321752!10851-111F5;0.628644!10852-111F6;0.448654!10853-111F7;0.906379!10854-111F8;0.0712065!10855-111F9;0.820958!10856-111G1;0.11163!10847-111F1;0.927!10846-111E9;0.0438738!10848-111F2;0.667003!10845-111E8;0.282056!10857-111G2;0.889844!10858-111G3;0.471595!10156-103A3;0.224749!11901-125F2;0.00500066!11902-125F3;0.07493!11903-125F4;0.452379!10689-109F5;0.172703!10648-109A9;0.0442992!10784-110H1;0.496839!10744-110C6;0.429561!10772-110F7;0.109373!10474-106I6;0.307281!10600-108E6;0.00202968!10684-109E9;0.933042!12226-129F3;0.223413!12227-129F4;0.199712!10508-107D4;0.0053385!10539-107G8;0.533246!10607-108F4;0.522911!10555-107I6;0.652993!10774-110F9;0.508045!10637-108I7;0.978376!10663-109C6;0.415346!10728-110A8;0.145863!10729-110A9;0.266134!10430-106D7;0.986545!10730-110B1;0.842075!10813-111B3;0.225964!10812-111B2;0.613819!10037-101F1;0.540736!10172-103C1;0.00251611!10163-103B1;0.0101935!10076-102A4;0.0043992!10073-102A1;0.00250557!10036-101E9;0.0257377!10195-103E6;0.00250554!10277-104E7;0.00282162!10434-106E2;0.0033515!10550-107I1;0.576663!10545-107H5;0.292941!10544-107H4;0.622179!10704-109H2;0.705704!10510-107D6;0.204698!10558-107I9;0.306988!10020-101D2;0.120514!10732-110B3;0.51216!10049-101G4;0.445125!10698-109G5;0.382709!10437-106E5;0.796349!10417-106C3;0.869571!10035-101E8;0.911036!10171-103B9;0.00422608!10157-103A4;0.00345034!10034-101E7;0.00503872!10072-101I9;0.00232388!10199-103F1;0.0307216!10200-103F2;0.902664!10697-109G4;0.889453!10723-110A3;0.988778!10179-103C8;0.168876!10160-103A7;0.0494094!10180-103C9;0.107561!10162-103A9;0.0789708!10021-101D3;0.0776762!10840-111E3;0.681947!10706-109H4;0.0831475!10033-101E6;0.136959!10032-101E5;0.000697632!10490-107B4;0.00348378!10439-106E7;0.888888!10022-101D4;0.24436!10176-103C5;0.213301!10469-106I1;0.0067968!10067-101I4;0.169175!10411-106B6;0.00879329!10471-106I3;0.829876!10030-101E3;0.0290624!10475-106I7;0.0728595!10787-110H4;0.28802!10477-106I9;0.537803!10695-109G2;0.760347!11771-123I7;0.254803!11772-123I8;0.380562!11773-123I9;0.132666!10093-102C3;0.085034!10442-106F1;0.607042!10442-106F1;0.00197186!10201-103F3;0.00499774!10639-108I9;0.562261!11843-124H7;0.0938018!11841-124H5;0.53875!10693-109F9;0.702424!10436-106E4;0.172078!10483-107A6;0.896206!10282-104F3;0.499002!10023-101D5;0.278791!10066-101I3;0.402275!10065-101I2;0.956097!10800-110I8;0.804755!10610-108F7;0.250674!10841-111E4;0.0677232!10541-107H1;0.560641!10842-111E5;0.579149!10562-108A4;0.21586!10024-101D6;0.0705383!10064-101I1;0.750133!10609-108F6;0.648373!10048-101G3;0.146597!10781-110G7;0.286348!10181-103D1;0.142162!10159-103A6;0.00422321!10056-101H2;0.00775371!10737-110B8;0.0114396!10025-101D7;0.904975!10044-101F8;0.347125!10424-106D1;0.839113!10463-106H4;0.0989219!10616-108G4;0.483225!10486-107A9;0.953359!10062-101H8;0.477127!10202-103F4;0.0134753!10158-103A5;0.948376!10441-106E9;0.0180138!10031-101E4;0.144034!10063-101H9;0.00190885!10063-101H9;0.0250399!11763-123H8;0.493431!11765-123I1;0.691777!11768-123I4;0.85319!10807-111A6;0.727595!10790-110H7;0.0473062!10798-110I6;0.0975685!10786-110H3;0.0636791!10591-108D6;0.00875074!10593-108D8;0.0328908!10590-108D5;0.0405107!10026-101D8;0.15219!10096-102C6;0.558522!10168-103B6;0.750607!10154-103A1;0.00465708!10209-103G2;0.00645389!10061-101H7;0.908478!10027-101D9;0.550754!10043-101F7;0.437314!10783-110G9;0.596131!10028-101E1;0.873678!10060-101H6;0.132237!10203-103F5;0.134947!10059-101H5;0.983073!10047-101G2;0.997072!10029-101E2;0.842804!10058-101H4;0.783839!10418-106C4;0.755772!10492-107B6;0.17139!10694-109G1;0.656538!10797-110I5;0.00585573!10057-101H3;0.972453!10100-102D1;0.866316!10055-101H1;0.320332!10204-103F6;0.277299!10191-103E2;0.00842637!10563-108A5;0.747005
|name=GCTCCGCTC,motif508,CNhs10641,T:1575.0(45.43%),B:22609.8(35.63%),P:1e-31
|name=GCTCCGCTC,motif508,CNhs10641,T:1575.0(45.43%),B:22609.8(35.63%),P:1e-31
|tomtom_result=CHA4#MA0283.1;0;0.00226206;1.07674;1;8;GCTCCGCTC;TCTCCGCC;-!RDR1#MA0360.1;0;0.00337556;1.60677;1;8;GCTCCGCTC;GTTCCGCA;-!Pax5#MA0014.1;2;0.00377407;1.79646;1;9;GCTCCGCTC;CCGCTACGCTTCAGTGCTCT;-!YML081W#MA0431.1;0;0.00477;2.27052;1;9;GCTCCGCTC;ACCCCGCAC;+!HAL9#MA0311.1;-1;0.00647531;3.08225;1;5;GCTCCGCTC;TTCCG;-!SUT1#MA0399.1;-1;0.00909369;4.3286;1;7;GCTCCGCTC;CCCCGCG;-!PDR8#MA0354.1;1;0.00964055;4.5889;1;7;GCTCCGCTC;ATCTCCGT;-!YBR239C#MA0420.1;0;0.00964055;4.5889;1;8;GCTCCGCTC;GTTCCGGT;-!Klf4#MA0039.2;0;0.0129709;6.17413;1;9;GCTCCGCTC;GCCCCACCCA;-!STP2#MA0395.1;10;0.0140336;6.68;1;9;GCTCCGCTC;TCGTCGTGCGGCGCCGATCA;-!SPIB#MA0081.1;-1;0.0164323;7.82179;1;7;GCTCCGCTC;TTCCTCT;-!YKL222C#MA0428.1;1;0.0171199;8.14907;1;8;GCTCCGCTC;ATTTCCGTT;-!IXR1#MA0323.1;-1;0.0179345;8.53683;1;8;GCTCCGCTC;CCCCGCTTCCGGCTT;-
}}
}}

Latest revision as of 12:27, 7 September 2012

Full Name: GCTCCGCTC,motif508,CNhs10641,T:1575.0(45.43%),B:22609.8(35.63%),P:1e-31

Motif matrix
POACGT
163143.3251244.25124.425
264.5751327.72555.125127.575
3179.5592.925138.61163.925
485.051269.45140.17580.325
5111.8251200.15143.325119.7
6114.97588.21256.85114.975
7133.8751217.475102.375121.275
866.1566.15225.2251217.475
9118.1251135.575154.35166.95

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CHA4#MA0283.100.002262061.0767418GCTCCGCTCTCTCCGCC-
RDR1#MA0360.100.003375561.6067718GCTCCGCTCGTTCCGCA-
Pax5#MA0014.120.003774071.7964619GCTCCGCTCCCGCTACGCTTCAGTGCTCT-
YML081W#MA0431.100.004772.2705219GCTCCGCTCACCCCGCAC+
HAL9#MA0311.1-10.006475313.0822515GCTCCGCTCTTCCG-
SUT1#MA0399.1-10.009093694.328617GCTCCGCTCCCCCGCG-
PDR8#MA0354.110.009640554.588917GCTCCGCTCATCTCCGT-
YBR239C#MA0420.100.009640554.588918GCTCCGCTCGTTCCGGT-
Klf4#MA0039.200.01297096.1741319GCTCCGCTCGCCCCACCCA-
STP2#MA0395.1100.01403366.6819GCTCCGCTCTCGTCGTGCGGCGCCGATCA-
SPIB#MA0081.1-10.01643237.8217917GCTCCGCTCTTCCTCT-
YKL222C#MA0428.110.01711998.1490718GCTCCGCTCATTTCCGTT-
IXR1#MA0323.1-10.01793458.5368318GCTCCGCTCCCCCGCTTCCGGCTT-
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