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MacroAPE 1083:TCKCGCT,motif355: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.767;1.767;1.767;1761.699!2;1.767;809.286;489.459;468.255!3;1.767;1.767;756.276;1007.19!4;1.767;1761.699;1.767;1.767!5;1.767;47.709;1095.54...")
 
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023!10597-108E3;0.104977!10717-109I6;0.366555!10455-106G5;0.207765!10534-107G3;0.027615!10429-106D6;0.00234248!10464-106H5;6.43667e-07!10827-111C8;0.000629227!10789-110H6;0.00868512!10828-111C9;0.162447!10788-110H5;0.0586887!10792-110H9;0.00610309!10765-110E9;0.0698353!10829-111D1;0.0303564!10830-111D2;0.0366802!10831-111D3;0.0189047!10832-111D4;0.00915885!10833-111D5;0.00682445!10764-110E8;0.00644143!10770-110F5;0.0432834!10399-106A3;0.0484218!10400-106A4;0.00401271!10405-106A9;0.00257397!10834-111D6;0.00589388!10835-111D7;0.0208155!10836-111D8;0.0117352!10837-111D9;0.00259363!10699-109G6;0.000343581!10802-111A1;0.000117156!10796-110I4;0.00392245!10010-101C1;0.37904!10810-111A9;0.0267891!10421-106C7;0.036299!10708-109H6;0.0733007!12235-129G3;0.066322!12236-129G4;0.0698864!12237-129G5;0.273086!10167-103B5;0.0958376!10151-102I7;0.556168!10428-106D5;0.740415!10795-110I3;0.96532!10805-111A4;0.0407862!10052-101G7;0.0283201!10189-103D9;0.0038875!10589-108D4;0.522245!10425-106D2;0.00881266!10427-106D4;0.0889443!10702-109G9;0.000253209!10432-106D9;0.0392807!10496-107C1;0.363909!10718-109I7;0.309084!10011-101C2;0.0792645!10053-101G8;0.0516332!10686-109F2;0.884885!10084-102B3;0.0684557!10012-101C3;0.937593!10085-102B4;0.782219!10482-107A5;0.404283!10419-106C5;0.0903247!10080-102A8;0.0576319!10760-110E4;0.0144445!10709-109H7;0.168414!10710-109H8;0.220335!10703-109H1;0.0844354!10719-109I8;0.0287791!10642-109A3;0.147849!10177-103C6;0.0363512!10164-103B2;0.653908!10173-103C2;0.672072!10166-103B4;0.290743!10083-102B2;0.350119!10188-103D8;0.480143!10552-107I3;0.934296!10553-107I4;0.222961!10013-101C4;0.879782!10536-107G5;0.0294298!10618-108G6;0.34606!10423-106C9;0.0993122!10785-110H2;0.0806999!12238-129G6;0.114018!12239-129G7;0.0326937!12240-129G8;0.68159!10416-106C2;0.169806!10801-110I9;0.00732193!10766-110F1;0.0838457!10824-111C5;0.0062068!10825-111C6;0.0464316!10826-111C7;0.0638589!10454-106G4;0.0454334!10409-106B4;0.0343953!10638-108I8;0.00380064!10636-108I6;0.348496!10513-107D9;0.380964!10420-106C6;0.18956!10082-102B1;0.0170785!10014-101C5;0.129917!10070-101I7;0.0853719!10452-106G2;0.0370466!10453-106G3;0.00251941!10449-106F8;0.00051529!10042-101F6;0.000585802!10069-101I6;0.875585!10193-103E4;0.00620441!10631-108I1;0.773466!10438-106E6;0.00658116!10488-107B2;0.101664!10196-103E7;0.179681!10071-101I8;0.0796584!10071-101I8;0.241036!10041-101F5;0.223841!10451-106G1;0.338963!10450-106F9;0.0435429!10604-108F1;0.0284649!10605-108F2;0.0442006!10606-108F3;0.0720522!10603-108E9;0.0693996!10497-107C2;0.0678602!10448-106F7;0.162494!10643-109A4;0.171699!10426-106D3;0.690174!10431-106D8;0.380868!10197-103E8;0.0414837!10443-106F2;0.00934393!10815-111B5;0.844881!10816-111B6;0.0654558!10817-111B7;0.0648115!10015-101C6;0.0723261!10410-106B5;0.0641266!10054-101G9;0.147303!10758-110E2;0.0767601!10711-109H9;0.213218!10040-101F4;0.15396!10470-106I2;0.506336!10415-106C1;0.149875!10198-103E9;0.932708!10614-108G2;0.0126705!10612-108F9;0.731784!10549-107H9;0.312027!10615-108G3;0.0365537!10487-107B1;0.0208091!10433-106E1;0.274366!10688-109F4;0.845737!10444-106F3;0.478642!10444-106F3;0.10169!10485-107A8;0.111919!10413-106B8;0.122795!10175-103C4;0.974561!10161-103A8;0.998712!12131-128D7;0.966326!10624-108H3;0.0601941!10712-109I1;0.914282!10205-103F7;0.028573!10206-103F8;0.0157004!10207-103F9;0.0305576!10050-101G5;0.0322711!10051-101G6;2.29122e-05!10016-101C7;0.00178965!10046-101G1;0.00216349!10778-110G4;0.120587!10633-108I3;0.0104849!10818-111B8;0.260101!10819-111B9;0.149807!10820-111C1;0.163154!10484-107A7;0.159888!10808-111A7;0.437481!10169-103B7;0.00566221!10153-102I9;0.842191!13425-144D5;0.8183!13433-144E4;0.025416!13437-144E8;0.0199055!11904-125F5;0.0142957!11905-125F6;0.821083!10039-101F3;0.770309!10791-110H8;0.626249!10017-101C8;0.703008!10045-101F9;0.0242803!10509-107D5;0.345247!10839-111E2;0.325321!10692-109F8;0.873906!10079-102A7;0.14282!10078-102A6;0.0111509!10721-110A1;0.00052256!10569-108B2;0.361059!10570-108B3;0.0328242!10571-108B4;0.0272617!10647-109A8;0.0892275!10752-110D5;0.0710841!10782-110G8;0.00343578!10726-110A6;0.0898869!10018-101C9;0.640928!10086-102B5;0.00434262!10182-103D2;0.0689205!10165-103B3;0.92232!10499-107C4;0.985075!10408-106B3;0.620893!10019-101D1;0.145359!10068-101I5;0.0434929!10075-102A3;0.291143!10077-102A5;0.0290202!10727-110A7;0.375634!10775-110G1;0.0903533!10412-106B7;0.0312065!12231-129F8;0.166591!12232-129F9;0.0479101!12233-129G1;0.029962!12234-129G2;0.0438603!10414-106B9;0.0476234!10170-103B8;0.0634206!10183-103D3;0.452208!10150-102I6;0.517694!10174-103C3;0.655705!10155-103A2;0.761201!10038-101F2;0.894141!10838-111E1;0.807257!10759-110E3;0.0639327!10514-107E1;0.148546!10465-106H6;0.195534!10691-109F7;0.771849!10843-111E6;0.111382!10844-111E7;0.00543019!11747-123G1;0.0249993!11748-123G2;0.106342!11749-123G3;0.0225783!11750-123G4;0.197972!11751-123G5;0.0437661!11840-124H4;0.0313415!11752-123G6;0.0825487!11753-123G7;0.00595364!11754-123G8;0.0326651!11755-123G9;0.0783145!11756-123H1;0.323345!11833-124G6;0.239321!11760-123H5;0.0157258!11836-124G9;0.0766998!11758-123H3;0.114095!11835-124G8;0.0298429!11762-123H7;0.0473921!11838-124H2;0.0215155!11757-123H2;0.25671!11759-123H4;0.780759!11761-123H6;0.0453736!11842-124H6;0.0114146!11837-124H1;0.0307641!10568-108B1;0.0669308!13230-141I8;0.788172!13231-141I9;0.075213!10696-109G3;0.0523268!10493-107B7;0.0594949!10494-107B8;0.416292!10850-111F4;0.387619!10851-111F5;0.0538074!10852-111F6;0.160222!10853-111F7;0.889044!10854-111F8;0.222283!10855-111F9;0.0486037!10856-111G1;0.485818!10847-111F1;0.0465106!10846-111E9;0.00945996!10848-111F2;0.280786!10845-111E8;0.301708!10857-111G2;0.0974488!10858-111G3;0.0641525!10156-103A3;0.110325!11901-125F2;0.628029!11902-125F3;0.698171!11903-125F4;0.933751!10689-109F5;0.568051!10648-109A9;0.564604!10784-110H1;0.778175!10744-110C6;0.343889!10772-110F7;0.00991263!10474-106I6;0.00507765!10600-108E6;0.149617!10684-109E9;0.477869!12226-129F3;0.343519!12227-129F4;0.526021!10508-107D4;0.503317!10539-107G8;0.0284137!10607-108F4;0.0192247!10555-107I6;0.0313128!10774-110F9;0.00608666!10637-108I7;0.0457322!10663-109C6;0.0227472!10728-110A8;0.0743965!10729-110A9;0.142868!10430-106D7;0.00711475!10730-110B1;0.0118069!10813-111B3;0.00136579!10812-111B2;0.0202235!10037-101F1;0.0262353!10172-103C1;0.644735!10163-103B1;0.484077!10076-102A4;0.742342!10073-102A1;0.693964!10036-101E9;0.153506!10195-103E6;0.787477!10277-104E7;0.669976!10434-106E2;0.547386!10550-107I1;0.59877!10545-107H5;0.566988!10544-107H4;0.609624!10704-109H2;0.361795!10510-107D6;0.00283138!10558-107I9;0.129542!10020-101D2;0.123156!10732-110B3;0.0480874!10049-101G4;0.165496!10698-109G5;0.0335359!10437-106E5;0.0598526!10417-106C3;0.0864615!10035-101E8;0.870535!10171-103B9;0.67894!10157-103A4;0.520893!10034-101E7;0.720614!10072-101I9;0.764582!10199-103F1;0.126349!10200-103F2;0.00294147!10697-109G4;0.00134642!10723-110A3;0.0617508!10179-103C8;0.456215!10160-103A7;0.801199!10180-103C9;0.581137!10162-103A9;0.811371!10021-101D3;0.483683!10840-111E3;0.152312!10706-109H4;0.00248975!10033-101E6;0.530807!10032-101E5;0.842886!10490-107B4;0.793992!10439-106E7;0.458226!10022-101D4;0.181751!10176-103C5;0.0524634!10469-106I1;0.540718!10067-101I4;0.203562!10411-106B6;0.625586!10471-106I3;0.825229!10030-101E3;0.700578!10475-106I7;0.473721!10787-110H4;0.0311523!10477-106I9;0.0564441!10695-109G2;0.00224374!11771-123I7;0.0212722!11772-123I8;0.46352!11773-123I9;0.989019!10093-102C3;0.758426!10442-106F1;0.0808371!10442-106F1;0.315421!10201-103F3;0.307497!10639-108I9;0.0666275!11843-124H7;0.987383!11841-124H5;0.41019!10693-109F9;0.304462!10436-106E4;0.918212!10483-107A6;0.123243!10282-104F3;0.494432!10023-101D5;1.61876e-05!10066-101I3;2.14425e-06!10065-101I2;0.0346188!10800-110I8;0.0746728!10610-108F7;0.0327106!10841-111E4;0.161075!10541-107H1;0.0304783!10842-111E5;0.147198!10562-108A4;0.0274289!10024-101D6;0.0018202!10064-101I1;0.21719!10609-108F6;0.432128!10048-101G3;0.312233!10781-110G7;0.0871967!10181-103D1;0.0840596!10159-103A6;0.941084!10056-101H2;0.956755!10737-110B8;0.717041!10025-101D7;0.0547539!10044-101F8;0.579278!10424-106D1;0.329363!10463-106H4;0.00270556!10616-108G4;0.605075!10486-107A9;0.298564!10062-101H8;0.288105!10202-103F4;0.0500508!10158-103A5;0.0882902!10441-106E9;0.50059!10031-101E4;0.00726668!10063-101H9;0.880708!10063-101H9;0.183249!11763-123H8;0.420337!11765-123I1;0.0384201!11768-123I4;0.00316962!10807-111A6;0.0131738!10790-110H7;0.0600247!10798-110I6;0.0212022!10786-110H3;0.00700518!10591-108D6;0.0336591!10593-108D8;0.00851588!10590-108D5;0.011683!10026-101D8;0.00436777!10096-102C6;0.116434!10168-103B6;0.155794!10154-103A1;0.904376!10209-103G2;0.867284!10061-101H7;0.0022992!10027-101D9;0.018355!10043-101F7;0.0169356!10783-110G9;0.306552!10028-101E1;0.169492!10060-101H6;0.0187577!10203-103F5;0.0452821!10059-101H5;0.00103417!10047-101G2;0.0126302!10029-101E2;0.415129!10058-101H4;0.0159932!10418-106C4;0.00649406!10492-107B6;0.171829!10694-109G1;0.196308!10797-110I5;0.223648!10057-101H3;0.862832!10100-102D1;0.00845034!10055-101H1;0.0844739!10204-103F6;0.320079!10191-103E2;0.0522725!10563-108A5;0.14739
|name=TCKCGCT,motif355,CNhs12321,T:1767.0(45.64%),B:24196.0(35.86%),P:1e-35
|name=TCKCGCT,motif355,CNhs12321,T:1767.0(45.64%),B:24196.0(35.86%),P:1e-35
|tomtom_result=Trl#MA0205.1;0;0.000391152;0.186189;0.372377;7;TCTCGCT;TTGCTCTCTC;+!E2F1#MA0024.1;2;0.00415919;1.97977;1;6;TCTCGCT;TTTGGCGC;+!SWI4#MA0401.1;0;0.00958762;4.56371;1;7;TCTCGCT;TTTCGCGT;-!RSC3#MA0374.1;0;0.0107186;5.10206;1;7;TCTCGCT;CCGCGCG;-!IRF1#MA0050.1;2;0.0118814;5.65554;1;7;TCTCGCT;GGTTTCACTTTC;-!brk#MA0213.1;1;0.0129053;6.14291;1;7;TCTCGCT;CTGGCGCC;+!IRF2#MA0051.1;7;0.0156619;7.45505;1;7;TCTCGCT;GTTTTGCTTTCACTTTCC;-!z#MA0255.1;0;0.0181221;8.62613;1;7;TCTCGCT;AATCACTCAA;-
}}
}}

Latest revision as of 12:33, 7 September 2012

Full Name: TCKCGCT,motif355,CNhs12321,T:1767.0(45.64%),B:24196.0(35.86%),P:1e-35

Motif matrix
POACGT
11.7671.7671.7671761.699
21.767809.286489.459468.255
31.7671.767756.2761007.19
41.7671761.6991.7671.767
51.76747.7091095.54621.984
61.7671736.9611.76726.505
71.76781.282556.6051127.346

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Trl#MA0205.100.0003911520.1861890.3723777TCTCGCTTTGCTCTCTC+
E2F1#MA0024.120.004159191.9797716TCTCGCTTTTGGCGC+
SWI4#MA0401.100.009587624.5637117TCTCGCTTTTCGCGT-
RSC3#MA0374.100.01071865.1020617TCTCGCTCCGCGCG-
IRF1#MA0050.120.01188145.6555417TCTCGCTGGTTTCACTTTC-
brk#MA0213.110.01290536.1429117TCTCGCTCTGGCGCC+
IRF2#MA0051.170.01566197.4550517TCTCGCTGTTTTGCTTTCACTTTCC-
z#MA0255.100.01812218.6261317TCTCGCTAATCACTCAA-