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MacroAPE 1083:Motif GTCANG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;1968;0!02;0;0;0;1968!03;0;1968;0;0!04;1968;0;0;0!05;492;492;492;492!06;0;0;1968;0 |macroape_1083_sample_pvalues=11376-118A8;0.516329!1...")
 
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05132!10789-110H6;0.517548!10828-111C9;0.969623!10788-110H5;0.292767!10792-110H9;0.365611!10765-110E9;0.967176!10829-111D1;0.779735!10830-111D2;0.495264!10831-111D3;0.828742!10832-111D4;0.207297!10833-111D5;0.401755!10764-110E8;0.507513!10770-110F5;0.452339!10399-106A3;0.520435!10400-106A4;0.613945!10405-106A9;0.745466!10834-111D6;0.740737!10835-111D7;0.619699!10836-111D8;0.661899!10837-111D9;0.425464!10699-109G6;0.259543!10802-111A1;0.407341!10796-110I4;0.430893!10010-101C1;0.438086!10810-111A9;0.242029!10421-106C7;0.707536!10708-109H6;0.626759!12235-129G3;0.975782!12236-129G4;0.824376!12237-129G5;0.301923!10167-103B5;0.709797!10151-102I7;0.767715!10428-106D5;0.87614!10795-110I3;0.390326!10805-111A4;0.586596!10052-101G7;0.271857!10189-103D9;0.794354!10589-108D4;0.870344!10425-106D2;0.997515!10427-106D4;0.513866!10702-109G9;0.458952!10432-106D9;0.84212!10496-107C1;0.319072!10718-109I7;0.648424!10011-101C2;0.621187!10053-101G8;0.840235!10686-109F2;0.185471!10084-102B3;0.582972!10012-101C3;0.834347!10085-102B4;0.768041!10482-107A5;0.826094!10419-106C5;0.815425!10080-102A8;0.451929!10760-110E4;0.61436!10709-109H7;0.387156!10710-109H8;0.435624!10703-109H1;0.52523!10719-109I8;0.673564!10642-109A3;0.441799!10177-103C6;0.996883!10164-103B2;0.67386!10173-103C2;0.836085!10166-103B4;0.654805!10083-102B2;0.749354!10188-103D8;0.648229!10552-107I3;0.647958!10553-107I4;0.70248!10013-101C4;0.817355!10536-107G5;0.961027!10618-108G6;0.08868!10423-106C9;0.204868!10785-110H2;0.0854183!12238-129G6;0.53839!12239-129G7;0.940097!12240-129G8;0.605303!10416-106C2;0.829189!10801-110I9;0.305402!10766-110F1;0.615904!10824-111C5;0.60734!10825-111C6;0.532259!10826-111C7;0.562487!10454-106G4;0.571522!10409-106B4;0.672791!10638-108I8;0.330445!10636-108I6;0.578306!10513-107D9;0.442892!10420-106C6;0.355312!10082-102B1;0.59239!10014-101C5;0.66043!10070-101I7;0.867487!10452-106G2;0.936902!10453-106G3;0.733917!10449-106F8;0.626211!10042-101F6;0.540466!10069-101I6;0.688523!10193-103E4;0.589917!10631-108I1;0.752582!10438-106E6;0.329049!10488-107B2;0.593404!10196-103E7;0.413938!10071-101I8;0.945273!10071-101I8;0.522352!10041-101F5;0.692663!10451-106G1;0.607081!10450-106F9;0.893258!10604-108F1;0.61065!10605-108F2;0.959632!10606-108F3;0.71325!10603-108E9;0.809563!10497-107C2;0.782829!10448-106F7;0.527419!10643-109A4;0.879199!10426-106D3;0.465155!10431-106D8;0.301275!10197-103E8;0.281087!10443-106F2;0.945434!10815-111B5;0.495223!10816-111B6;0.450402!10817-111B7;0.506756!10015-101C6;0.449728!10410-106B5;0.931019!10054-101G9;0.361734!10758-110E2;0.822504!10711-109H9;0.395762!10040-101F4;0.574591!10470-106I2;0.756019!10415-106C1;0.532994!10198-103E9;0.369466!10614-108G2;0.883715!10612-108F9;0.180925!10549-107H9;0.40974!10615-108G3;0.935504!10487-107B1;0.438341!10433-106E1;0.960133!10688-109F4;0.630896!10444-106F3;0.426475!10444-106F3;0.565362!10485-107A8;0.595696!10413-106B8;0.373824!10175-103C4;0.611711!10161-103A8;0.647474!12131-128D7;0.730749!10624-108H3;0.538732!10712-109I1;0.480981!10205-103F7;0.814067!10206-103F8;0.436428!10207-103F9;0.437821!10050-101G5;0.4102!10051-101G6;0.482134!10016-101C7;0.191887!10046-101G1;0.131945!10778-110G4;0.385046!10633-108I3;0.79439!10818-111B8;0.563024!10819-111B9;0.297124!10820-111C1;0.314721!10484-107A7;0.290553!10808-111A7;0.857948!10169-103B7;0.262101!10153-102I9;0.735624!13425-144D5;0.850012!13433-144E4;0.151537!13437-144E8;0.19298!11904-125F5;0.111265!11905-125F6;0.684539!10039-101F3;0.548517!10791-110H8;0.812304!10017-101C8;0.92105!10045-101F9;0.866149!10509-107D5;0.692315!10839-111E2;0.454361!10692-109F8;0.679279!10079-102A7;0.413081!10078-102A6;0.434083!10721-110A1;0.213022!10569-108B2;0.448598!10570-108B3;0.789294!10571-108B4;0.642636!10647-109A8;0.645076!10752-110D5;0.688176!10782-110G8;0.253811!10726-110A6;0.607116!10018-101C9;0.442171!10086-102B5;0.573722!10182-103D2;0.701811!10165-103B3;0.632973!10499-107C4;0.695453!10408-106B3;0.619681!10019-101D1;0.3661!10068-101I5;0.893887!10075-102A3;0.854818!10077-102A5;0.907068!10727-110A7;0.76617!10775-110G1;0.627587!10412-106B7;0.364922!12231-129F8;0.474911!12232-129F9;0.0156192!12233-129G1;0.0368503!12234-129G2;0.0263298!10414-106B9;0.0210146!10170-103B8;0.91194!10183-103D3;0.649958!10150-102I6;0.83753!10174-103C3;0.770161!10155-103A2;0.69322!10038-101F2;0.695308!10838-111E1;0.681094!10759-110E3;0.438684!10514-107E1;0.135022!10465-106H6;0.180816!10691-109F7;0.749517!10843-111E6;0.228685!10844-111E7;0.620669!11747-123G1;0.719367!11748-123G2;0.811598!11749-123G3;0.782156!11750-123G4;0.821994!11751-123G5;0.0671064!11840-124H4;0.0583609!11752-123G6;0.205704!11753-123G7;0.095095!11754-123G8;0.30373!11755-123G9;0.722747!11756-123H1;0.876753!11833-124G6;0.993539!11760-123H5;0.162193!11836-124G9;0.857506!11758-123H3;0.804473!11835-124G8;0.976663!11762-123H7;0.760159!11838-124H2;0.302301!11757-123H2;0.877576!11759-123H4;0.474567!11761-123H6;0.26159!11842-124H6;0.687221!11837-124H1;0.564923!10568-108B1;0.896855!13230-141I8;0.49008!13231-141I9;0.72836!10696-109G3;0.692821!10493-107B7;0.794912!10494-107B8;0.943581!10850-111F4;0.615276!10851-111F5;0.434352!10852-111F6;0.184981!10853-111F7;0.115545!10854-111F8;0.224806!10855-111F9;0.0596905!10856-111G1;0.0915416!10847-111F1;0.701645!10846-111E9;0.115712!10848-111F2;0.291245!10845-111E8;0.387835!10857-111G2;0.309068!10858-111G3;0.951754!10156-103A3;0.584158!11901-125F2;0.802489!11902-125F3;0.829438!11903-125F4;0.924959!10689-109F5;0.955759!10648-109A9;0.341162!10784-110H1;0.689373!10744-110C6;0.839308!10772-110F7;0.414178!10474-106I6;0.392042!10600-108E6;0.993003!10684-109E9;0.800436!12226-129F3;0.493324!12227-129F4;0.860068!10508-107D4;0.464055!10539-107G8;0.681241!10607-108F4;0.84968!10555-107I6;0.5399!10774-110F9;0.559536!10637-108I7;0.409316!10663-109C6;0.47019!10728-110A8;0.823787!10729-110A9;0.493769!10430-106D7;0.905312!10730-110B1;0.703953!10813-111B3;0.40366!10812-111B2;0.761764!10037-101F1;0.849903!10172-103C1;0.78965!10163-103B1;0.793338!10076-102A4;0.787004!10073-102A1;0.681986!10036-101E9;0.917109!10195-103E6;0.760758!10277-104E7;0.796556!10434-106E2;0.289697!10550-107I1;0.52092!10545-107H5;0.458129!10544-107H4;0.71671!10704-109H2;0.19607!10510-107D6;0.663559!10558-107I9;0.658339!10020-101D2;0.673189!10732-110B3;0.979499!10049-101G4;0.741396!10698-109G5;0.399158!10437-106E5;0.340849!10417-106C3;0.449027!10035-101E8;0.726505!10171-103B9;0.739551!10157-103A4;0.766544!10034-101E7;0.77273!10072-101I9;0.717707!10199-103F1;0.818209!10200-103F2;0.402586!10697-109G4;0.743488!10723-110A3;0.947897!10179-103C8;0.74193!10160-103A7;0.295065!10180-103C9;0.485039!10162-103A9;0.561016!10021-101D3;0.626131!10840-111E3;0.903986!10706-109H4;0.451718!10033-101E6;0.873288!10032-101E5;0.639873!10490-107B4;0.730095!10439-106E7;0.654605!10022-101D4;0.199305!10176-103C5;0.88934!10469-106I1;0.742943!10067-101I4;0.779726!10411-106B6;0.523434!10471-106I3;0.0298898!10030-101E3;0.868588!10475-106I7;0.753825!10787-110H4;0.497801!10477-106I9;0.410438!10695-109G2;0.452981!11771-123I7;0.774886!11772-123I8;0.518295!11773-123I9;0.385542!10093-102C3;0.797522!10442-106F1;0.506011!10442-106F1;0.132123!10201-103F3;0.146404!10639-108I9;0.916233!11843-124H7;0.456858!11841-124H5;0.795786!10693-109F9;0.285073!10436-106E4;0.970458!10483-107A6;0.881641!10282-104F3;0.592641!10023-101D5;0.102836!10066-101I3;0.0835015!10065-101I2;0.980607!10800-110I8;0.986114!10610-108F7;0.732131!10841-111E4;0.686038!10541-107H1;0.929216!10842-111E5;0.587122!10562-108A4;0.455091!10024-101D6;0.560251!10064-101I1;0.708783!10609-108F6;0.613528!10048-101G3;0.494139!10781-110G7;0.62913!10181-103D1;0.535861!10159-103A6;0.656381!10056-101H2;0.622141!10737-110B8;0.847001!10025-101D7;0.948921!10044-101F8;0.957853!10424-106D1;0.892818!10463-106H4;0.452569!10616-108G4;0.906207!10486-107A9;0.327668!10062-101H8;0.928395!10202-103F4;0.88053!10158-103A5;0.610332!10441-106E9;0.540634!10031-101E4;0.700976!10063-101H9;0.790924!10063-101H9;0.77229!11763-123H8;0.55208!11765-123I1;0.941415!11768-123I4;0.532368!10807-111A6;0.953672!10790-110H7;0.160327!10798-110I6;0.19448!10786-110H3;0.238946!10591-108D6;0.694797!10593-108D8;0.571763!10590-108D5;0.865725!10026-101D8;0.337055!10096-102C6;0.816873!10168-103B6;0.59153!10154-103A1;0.651924!10209-103G2;0.74595!10061-101H7;0.749213!10027-101D9;0.81911!10043-101F7;0.331821!10783-110G9;0.649633!10028-101E1;0.267051!10060-101H6;0.912199!10203-103F5;0.88048!10059-101H5;0.805167!10047-101G2;0.747972!10029-101E2;0.730091!10058-101H4;0.787576!10418-106C4;0.916062!10492-107B6;0.142359!10694-109G1;0.912334!10797-110I5;0.781083!10057-101H3;0.789994!10100-102D1;0.618735!10055-101H1;0.749015!10204-103F6;0.569372!10191-103E2;0.776759!10563-108A5;0.892082
|name=motif_GTCANG
|name=motif_GTCANG
|tomtom_result=Pax2#MA0067.1;1;0.000630861;0.30029;0.321532;6;GTCAAG;AGTCACGG;+!usp#MA0016.1;3;0.000761626;0.362534;0.321532;6;GTCAAG;GGGGTCACGG;+!ESR2#MA0258.1;4;0.00109179;0.51969;0.321532;6;GTCAAG;CAAGGTCACGGTGACCTG;+!NFE2L1::MafG#MA0089.1;0;0.00135598;0.645447;0.321532;6;GTCAAG;GTCATG;-!ESR1#MA0112.2;2;0.00172147;0.819419;0.326557;6;GTCAAG;AGGTCAGGGTGACCTGGGCC;-!ESR1#MA0112.2;3;0.00372822;1.77463;0.589361;6;GTCAAG;GGGGTCACGGTGACCTGG;-!RXR::RAR_DR5#MA0159.1;2;0.00511675;2.43557;0.629356;6;GTCAAG;AGGTCATGGAGAGGTCA;+!PPARG#MA0066.1;4;0.00530831;2.52675;0.629356;6;GTCAAG;GTAGGTCACGGTGACCTACT;+!BAS1#MA0278.1;11;0.00721869;3.4361;0.686205;6;GTCAAG;GCACAGCCAGAGTCAAGTCAA;+!TOS8#MA0408.1;2;0.00831807;3.9594;0.686205;6;GTCAAG;CTGTCAAA;+!bZIP910#MA0096.1;2;0.00842772;4.0116;0.686205;5;GTCAAG;ACGTCAT;-!ARG81#MA0272.1;3;0.0086817;4.13249;0.686205;5;GTCAAG;AGAGTCAC;-!ZAP1#MA0440.1;9;0.00968642;4.61073;0.706725;6;GTCAAG;ACCTTAAAGGTCATG;+!PPARG::RXRA#MA0065.1;13;0.0111355;5.30051;0.70946;6;GTCAAG;CTAGGGGTCAAAGGTCATCG;+!CREB1#MA0018.1;3;0.0115135;5.48041;0.70946;6;GTCAAG;GACGTCACCAGG;-!INSM1#MA0155.1;1;0.0119679;5.69671;0.70946;6;GTCAAG;TGTCAGGGGGCG;+!CST6#MA0286.1;4;0.0130615;6.21726;0.728742;5;GTCAAG;TTACGTCAT;-!RXRA::VDR#MA0074.1;2;0.0140261;6.6764;0.739084;6;GTCAAG;GGGTCAACGAGTTCA;+!Pax6#MA0069.1;2;0.0153609;7.31179;0.76682;6;GTCAAG;AACTCATGCGTGAA;-!NR4A2#MA0160.1;3;0.0202335;9.63116;0.927346;5;GTCAAG;AAGGTCAC;+
}}
}}

Latest revision as of 12:42, 7 September 2012

Full Name: motif_GTCANG

Motif matrix
POACGT
010019680
020001968
030196800
041968000
05492492492492
060019680

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax2#MA0067.110.0006308610.300290.3215326GTCAAGAGTCACGG+
usp#MA0016.130.0007616260.3625340.3215326GTCAAGGGGGTCACGG+
ESR2#MA0258.140.001091790.519690.3215326GTCAAGCAAGGTCACGGTGACCTG+
NFE2L1::MafG#MA0089.100.001355980.6454470.3215326GTCAAGGTCATG-
ESR1#MA0112.220.001721470.8194190.3265576GTCAAGAGGTCAGGGTGACCTGGGCC-
ESR1#MA0112.230.003728221.774630.5893616GTCAAGGGGGTCACGGTGACCTGG-
RXR::RAR_DR5#MA0159.120.005116752.435570.6293566GTCAAGAGGTCATGGAGAGGTCA+
PPARG#MA0066.140.005308312.526750.6293566GTCAAGGTAGGTCACGGTGACCTACT+
BAS1#MA0278.1110.007218693.43610.6862056GTCAAGGCACAGCCAGAGTCAAGTCAA+
TOS8#MA0408.120.008318073.95940.6862056GTCAAGCTGTCAAA+
bZIP910#MA0096.120.008427724.01160.6862055GTCAAGACGTCAT-
ARG81#MA0272.130.00868174.132490.6862055GTCAAGAGAGTCAC-
ZAP1#MA0440.190.009686424.610730.7067256GTCAAGACCTTAAAGGTCATG+
PPARG::RXRA#MA0065.1130.01113555.300510.709466GTCAAGCTAGGGGTCAAAGGTCATCG+
CREB1#MA0018.130.01151355.480410.709466GTCAAGGACGTCACCAGG-
INSM1#MA0155.110.01196795.696710.709466GTCAAGTGTCAGGGGGCG+
CST6#MA0286.140.01306156.217260.7287425GTCAAGTTACGTCAT-
RXRA::VDR#MA0074.120.01402616.67640.7390846GTCAAGGGGTCAACGAGTTCA+
Pax6#MA0069.120.01536097.311790.766826GTCAAGAACTCATGCGTGAA-
NR4A2#MA0160.130.02023359.631160.9273465GTCAAGAAGGTCAC+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_GTCANG&oldid=2133743"