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MacroAPE 1083:9-TTTCSCT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.971;2.971;2.971;2962.087!2;56.449;344.636;2.971;2566.944!3;139.637;944.778;2.971;1883.614!4;2.971;2213.395;490.215;264.419!5;415.94;1434.9...")
 
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01!10464-106H5;0.0599499!10827-111C8;0.162655!10789-110H6;0.0514323!10828-111C9;0.0888373!10788-110H5;0.154394!10792-110H9;0.142043!10765-110E9;0.123912!10829-111D1;0.140402!10830-111D2;0.125837!10831-111D3;0.102354!10832-111D4;0.0585216!10833-111D5;0.11837!10764-110E8;0.0722783!10770-110F5;0.0975439!10399-106A3;0.196373!10400-106A4;0.114126!10405-106A9;0.0763003!10834-111D6;0.120048!10835-111D7;0.127333!10836-111D8;0.0492851!10837-111D9;0.062047!10699-109G6;0.194147!10802-111A1;0.228394!10796-110I4;0.123579!10010-101C1;0.128527!10810-111A9;0.0896537!10421-106C7;0.265675!10708-109H6;0.0259197!12235-129G3;0.928751!12236-129G4;0.775397!12237-129G5;0.647699!10167-103B5;0.792578!10151-102I7;0.0120653!10428-106D5;0.0179867!10795-110I3;0.234839!10805-111A4;0.0283716!10052-101G7;0.451867!10189-103D9;0.0193213!10589-108D4;0.322041!10425-106D2;0.700565!10427-106D4;0.492391!10702-109G9;0.0141605!10432-106D9;0.0579404!10496-107C1;0.0396628!10718-109I7;0.0642548!10011-101C2;0.170194!10053-101G8;0.0254734!10686-109F2;0.68009!10084-102B3;0.0501773!10012-101C3;0.0164287!10085-102B4;0.00824533!10482-107A5;0.0186038!10419-106C5;0.385619!10080-102A8;0.164775!10760-110E4;0.0390069!10709-109H7;0.345368!10710-109H8;0.184212!10703-109H1;0.125405!10719-109I8;0.763992!10642-109A3;0.84185!10177-103C6;0.828921!10164-103B2;0.0081933!10173-103C2;0.0198054!10166-103B4;0.065911!10083-102B2;0.0633251!10188-103D8;0.0266184!10552-107I3;0.00708944!10553-107I4;0.0634742!10013-101C4;0.983023!10536-107G5;0.0287725!10618-108G6;0.271546!10423-106C9;0.757306!10785-110H2;0.529551!12238-129G6;0.629428!12239-129G7;0.659519!12240-129G8;0.43259!10416-106C2;0.59843!10801-110I9;0.183169!10766-110F1;0.0232052!10824-111C5;0.124494!10825-111C6;0.141567!10826-111C7;0.166937!10454-106G4;0.127135!10409-106B4;0.113159!10638-108I8;0.0546114!10636-108I6;0.0646106!10513-107D9;0.033403!10420-106C6;0.917546!10082-102B1;0.473434!10014-101C5;0.0502002!10070-101I7;0.0278143!10452-106G2;0.019735!10453-106G3;0.03398!10449-106F8;0.0481204!10042-101F6;0.0517192!10069-101I6;0.0156212!10193-103E4;0.0558959!10631-108I1;0.0128504!10438-106E6;0.176904!10488-107B2;0.0900127!10196-103E7;0.174289!10071-101I8;0.00231816!10071-101I8;0.062727!10041-101F5;0.0272723!10451-106G1;0.047212!10450-106F9;0.0551116!10604-108F1;0.358872!10605-108F2;0.0528167!10606-108F3;0.101332!10603-108E9;0.0300571!10497-107C2;0.0533269!10448-106F7;0.0284945!10643-109A4;0.0882306!10426-106D3;0.452678!10431-106D8;0.0711983!10197-103E8;0.00454584!10443-106F2;0.0159357!10815-111B5;0.277559!10816-111B6;0.139303!10817-111B7;0.106089!10015-101C6;0.12533!10410-106B5;0.0104085!10054-101G9;0.934327!10758-110E2;0.0291787!10711-109H9;0.0840893!10040-101F4;0.0264075!10470-106I2;0.0182489!10415-106C1;0.351934!10198-103E9;0.00781823!10614-108G2;0.11372!10612-108F9;0.0109929!10549-107H9;0.1206!10615-108G3;0.55444!10487-107B1;0.371118!10433-106E1;0.0202302!10688-109F4;0.349047!10444-106F3;0.136353!10444-106F3;0.0647256!10485-107A8;0.0642152!10413-106B8;0.0442741!10175-103C4;0.114505!10161-103A8;0.0062056!12131-128D7;0.010127!10624-108H3;0.0817349!10712-109I1;0.725194!10205-103F7;0.0940218!10206-103F8;0.0329291!10207-103F9;0.0258017!10050-101G5;0.184889!10051-101G6;0.052393!10016-101C7;0.0750745!10046-101G1;0.0880547!10778-110G4;0.0571633!10633-108I3;0.239603!10818-111B8;0.872584!10819-111B9;0.111921!10820-111C1;0.111065!10484-107A7;0.10834!10808-111A7;0.143579!10169-103B7;0.175551!10153-102I9;0.00940123!13425-144D5;0.0152936!13433-144E4;0.123473!13437-144E8;0.186013!11904-125F5;0.247818!11905-125F6;0.0952695!10039-101F3;0.282243!10791-110H8;0.0207705!10017-101C8;0.743937!10045-101F9;0.0319152!10509-107D5;0.0760839!10839-111E2;0.0566026!10692-109F8;0.142035!10079-102A7;0.130266!10078-102A6;0.0243018!10721-110A1;0.0402493!10569-108B2;0.613411!10570-108B3;0.125943!10571-108B4;0.26778!10647-109A8;0.17652!10752-110D5;0.124277!10782-110G8;0.197601!10726-110A6;0.97952!10018-101C9;0.525694!10086-102B5;0.396759!10182-103D2;0.203428!10165-103B3;0.00535226!10499-107C4;0.0102346!10408-106B3;0.559756!10019-101D1;0.125307!10068-101I5;0.0723879!10075-102A3;0.102238!10077-102A5;0.0550417!10727-110A7;0.501445!10775-110G1;0.0412088!10412-106B7;0.0172!12231-129F8;0.00167936!12232-129F9;0.681447!12233-129G1;0.561852!12234-129G2;0.366678!10414-106B9;0.60671!10170-103B8;0.23442!10183-103D3;0.00911276!10150-102I6;0.00673486!10174-103C3;0.0152984!10155-103A2;0.00593741!10038-101F2;0.0150144!10838-111E1;0.0119262!10759-110E3;0.58624!10514-107E1;0.339466!10465-106H6;0.834721!10691-109F7;0.817343!10843-111E6;0.193272!10844-111E7;0.621093!11747-123G1;0.711338!11748-123G2;0.471086!11749-123G3;0.193903!11750-123G4;0.309199!11751-123G5;0.393881!11840-124H4;0.435406!11752-123G6;0.399308!11753-123G7;0.923949!11754-123G8;0.37288!11755-123G9;0.576673!11756-123H1;0.511989!11833-124G6;0.943376!11760-123H5;0.347918!11836-124G9;0.932861!11758-123H3;0.161339!11835-124G8;0.140155!11762-123H7;0.251973!11838-124H2;0.334148!11757-123H2;0.252442!11759-123H4;0.642064!11761-123H6;0.860792!11842-124H6;0.344599!11837-124H1;0.523262!10568-108B1;0.213807!13230-141I8;0.521695!13231-141I9;0.275954!10696-109G3;0.257193!10493-107B7;0.409305!10494-107B8;0.0383774!10850-111F4;0.68958!10851-111F5;0.0559421!10852-111F6;0.22486!10853-111F7;0.353064!10854-111F8;0.0942011!10855-111F9;0.25064!10856-111G1;0.526282!10847-111F1;0.95888!10846-111E9;0.673064!10848-111F2;0.344142!10845-111E8;0.230995!10857-111G2;0.267268!10858-111G3;0.0907668!10156-103A3;0.0274364!11901-125F2;0.0180129!11902-125F3;0.0333796!11903-125F4;0.0016915!10689-109F5;0.0106274!10648-109A9;0.100354!10784-110H1;0.110125!10744-110C6;0.0816265!10772-110F7;0.153643!10474-106I6;0.119112!10600-108E6;0.0641837!10684-109E9;0.0670149!12226-129F3;0.00467231!12227-129F4;0.395219!10508-107D4;0.504118!10539-107G8;0.928919!10607-108F4;0.906872!10555-107I6;0.666181!10774-110F9;0.844322!10637-108I7;0.224745!10663-109C6;0.753497!10728-110A8;0.926229!10729-110A9;0.270879!10430-106D7;0.168622!10730-110B1;0.108862!10813-111B3;0.356547!10812-111B2;0.130408!10037-101F1;0.749924!10172-103C1;0.0232607!10163-103B1;0.00631999!10076-102A4;0.0171659!10073-102A1;0.0100849!10036-101E9;0.0572405!10195-103E6;0.0186899!10277-104E7;0.00910157!10434-106E2;0.0067381!10550-107I1;0.0593621!10545-107H5;0.328018!10544-107H4;0.231388!10704-109H2;0.0165816!10510-107D6;0.695968!10558-107I9;0.795195!10020-101D2;0.615632!10732-110B3;0.0224644!10049-101G4;0.0744302!10698-109G5;0.233397!10437-106E5;0.631407!10417-106C3;0.122714!10035-101E8;0.000679461!10171-103B9;0.0173836!10157-103A4;0.00982316!10034-101E7;0.0146379!10072-101I9;0.0209777!10199-103F1;0.0362303!10200-103F2;0.319226!10697-109G4;0.00875774!10723-110A3;0.766926!10179-103C8;0.328547!10160-103A7;0.0976414!10180-103C9;0.232341!10162-103A9;0.0100334!10021-101D3;0.0443722!10840-111E3;0.175479!10706-109H4;0.0273834!10033-101E6;0.291288!10032-101E5;0.0106488!10490-107B4;0.015848!10439-106E7;0.158895!10022-101D4;0.600967!10176-103C5;0.0318599!10469-106I1;0.00794871!10067-101I4;0.235157!10411-106B6;0.00837764!10471-106I3;0.0692553!10030-101E3;0.00305961!10475-106I7;0.0290915!10787-110H4;0.605359!10477-106I9;0.420577!10695-109G2;0.753475!11771-123I7;0.152536!11772-123I8;0.157603!11773-123I9;0.132356!10093-102C3;0.337357!10442-106F1;0.313363!10442-106F1;0.255711!10201-103F3;0.292023!10639-108I9;0.00413263!11843-124H7;0.278171!11841-124H5;0.019607!10693-109F9;0.0530775!10436-106E4;0.0536395!10483-107A6;0.00466687!10282-104F3;0.311732!10023-101D5;0.0356757!10066-101I3;0.0831439!10065-101I2;0.025901!10800-110I8;0.0272893!10610-108F7;0.85482!10841-111E4;0.832262!10541-107H1;0.643417!10842-111E5;0.512591!10562-108A4;0.925188!10024-101D6;0.933879!10064-101I1;0.105282!10609-108F6;0.0340249!10048-101G3;0.66189!10781-110G7;0.00824759!10181-103D1;0.692304!10159-103A6;0.00294232!10056-101H2;0.00785817!10737-110B8;0.0109636!10025-101D7;0.513984!10044-101F8;0.974469!10424-106D1;0.838584!10463-106H4;0.0344063!10616-108G4;0.0499936!10486-107A9;0.250958!10062-101H8;0.0359792!10202-103F4;0.0244061!10158-103A5;0.273157!10441-106E9;0.00450594!10031-101E4;0.96459!10063-101H9;0.0184547!10063-101H9;0.049092!11763-123H8;0.0221747!11765-123I1;0.614498!11768-123I4;0.364304!10807-111A6;0.488395!10790-110H7;0.508793!10798-110I6;0.835039!10786-110H3;0.654627!10591-108D6;0.2831!10593-108D8;0.934663!10590-108D5;0.0977189!10026-101D8;0.61973!10096-102C6;0.00617335!10168-103B6;0.20208!10154-103A1;0.00611768!10209-103G2;0.0155929!10061-101H7;0.0305411!10027-101D9;0.00614105!10043-101F7;0.346176!10783-110G9;0.817519!10028-101E1;0.509387!10060-101H6;0.00348249!10203-103F5;0.0196149!10059-101H5;0.053815!10047-101G2;0.0167035!10029-101E2;0.752652!10058-101H4;0.104048!10418-106C4;0.0313879!10492-107B6;0.0385774!10694-109G1;0.0297029!10797-110I5;0.48983!10057-101H3;0.451679!10100-102D1;0.0185604!10055-101H1;0.0889244!10204-103F6;0.020946!10191-103E2;0.0276233!10563-108A5;0.202194
|name=9-TTTCSCT,CNhs13465,BestGuess:PRDM1_f1_HM09(0.744373968197745),T:2971.0(42.71%),B:14173.2(33.73%),P:1e-54
|name=9-TTTCSCT,CNhs13465,BestGuess:PRDM1_f1_HM09(0.744373968197745),T:2971.0(42.71%),B:14173.2(33.73%),P:1e-54
|tomtom_result=IRF1#MA0050.1;2;0.00205466;0.978019;0.989988;7;TTTCCCT;GGTTTCACTTTC;-!IRF2#MA0051.1;7;0.0024101;1.14721;0.989988;7;TTTCCCT;GTTTTGCTTTCACTTTCC;-!id1#MA0120.1;0;0.00466415;2.22014;0.989988;7;TTTCCCT;TTTTCCTTTTCG;+!SPIB#MA0081.1;0;0.00554813;2.64091;0.989988;7;TTTCCCT;TTCCTCT;-!CUP2#MA0287.1;3;0.00680637;3.23983;0.989988;7;TTTCCCT;CATTTCTGCTG;-!Klf4#MA0039.1;2;0.00791021;3.76526;0.989988;7;TTTCCCT;CCTTCCTTTA;-!dl_1#MA0022.1;6;0.00856877;4.07873;0.989988;6;TTTCCCT;GGGGTTTTTCCC;+!YRM1#MA0438.1;1;0.00969881;4.61663;0.989988;7;TTTCCCT;ATTTCCGT;-!NFKB1#MA0105.1;5;0.0102736;4.89024;0.989988;6;TTTCCCT;GGGGATTCCCC;+!STB3#MA0390.1;10;0.0120652;5.74302;0.989988;7;TTTCCCT;GTCCAAAATTTTTCACTCTGG;+!YPR196W#MA0437.1;1;0.0121209;5.76956;0.989988;7;TTTCCCT;ATTTCTCCG;+!MZF1_5-13#MA0057.1;0;0.0124788;5.93993;0.989988;7;TTTCCCT;TTCCCCCTAC;-!STAT1#MA0137.1;3;0.014201;6.75967;1;7;TTTCCCT;CAGTTTCATTTTCC;-!E2F1#MA0024.1;0;0.0155907;7.42117;1;7;TTTCCCT;TTTGGCGC;+!SWI4#MA0401.1;0;0.0163952;7.8041;1;7;TTTCCCT;TTTCGCGT;-!RDR1#MA0360.1;1;0.0209747;9.98396;1;7;TTTCCCT;GTTCCGCA;-
}}
}}

Latest revision as of 12:49, 7 September 2012

Full Name: 9-TTTCSCT,CNhs13465,BestGuess:PRDM1_f1_HM09(0.744373968197745),T:2971.0(42.71%),B:14173.2(33.73%),P:1e-54

Motif matrix
POACGT
12.9712.9712.9712962.087
256.449344.6362.9712566.944
3139.637944.7782.9711883.614
42.9712213.395490.215264.419
5415.941434.993995.285124.782
620.7972935.34811.8842.971
72.971843.764338.6941785.571

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
IRF1#MA0050.120.002054660.9780190.9899887TTTCCCTGGTTTCACTTTC-
IRF2#MA0051.170.00241011.147210.9899887TTTCCCTGTTTTGCTTTCACTTTCC-
id1#MA0120.100.004664152.220140.9899887TTTCCCTTTTTCCTTTTCG+
SPIB#MA0081.100.005548132.640910.9899887TTTCCCTTTCCTCT-
CUP2#MA0287.130.006806373.239830.9899887TTTCCCTCATTTCTGCTG-
Klf4#MA0039.120.007910213.765260.9899887TTTCCCTCCTTCCTTTA-
dl_1#MA0022.160.008568774.078730.9899886TTTCCCTGGGGTTTTTCCC+
YRM1#MA0438.110.009698814.616630.9899887TTTCCCTATTTCCGT-
NFKB1#MA0105.150.01027364.890240.9899886TTTCCCTGGGGATTCCCC+
STB3#MA0390.1100.01206525.743020.9899887TTTCCCTGTCCAAAATTTTTCACTCTGG+
YPR196W#MA0437.110.01212095.769560.9899887TTTCCCTATTTCTCCG+
MZF1_5-13#MA0057.100.01247885.939930.9899887TTTCCCTTTCCCCCTAC-
STAT1#MA0137.130.0142016.7596717TTTCCCTCAGTTTCATTTTCC-
E2F1#MA0024.100.01559077.4211717TTTCCCTTTTGGCGC+
SWI4#MA0401.100.01639527.804117TTTCCCTTTTCGCGT-
RDR1#MA0360.110.02097479.9839617TTTCCCTGTTCCGCA-
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