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MacroAPE 1083:12-CGCGGCGGCGGCT: Difference between revisions

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29A3;0.143831!12176-128I7;0.110183!12177-128I8;0.0883041!12182-129A4;0.075249!12183-129A5;0.144696!12184-129A6;0.212528!10809-111A8;0.0507204!10597-108E3;0.514007!10717-109I6;0.000225086!10455-106G5;0.00620493!10534-107G3;0.489903!10429-106D6;0.155004!10464-106H5;0.0266633!10827-111C8;0.303363!10789-110H6;0.166525!10828-111C9;0.415433!10788-110H5;0.521069!10792-110H9;0.136025!10765-110E9;0.442176!10829-111D1;0.0728483!10830-111D2;0.291137!10831-111D3;0.00126914!10832-111D4;0.372955!10833-111D5;0.448334!10764-110E8;0.327801!10770-110F5;0.146516!10399-106A3;0.257752!10400-106A4;0.397056!10405-106A9;0.302481!10834-111D6;0.270016!10835-111D7;0.412242!10836-111D8;0.272021!10837-111D9;0.0278416!10699-109G6;0.351698!10802-111A1;0.020405!10796-110I4;0.038465!10010-101C1;0.833831!10810-111A9;0.356484!10421-106C7;0.0692651!10708-109H6;0.805987!12235-129G3;0.464145!12236-129G4;0.0380422!12237-129G5;0.000282259!10167-103B5;0.0140257!10151-102I7;0.0358978!10428-106D5;0.0133701!10795-110I3;0.217865!10805-111A4;0.939326!10052-101G7;0.19998!10189-103D9;0.0428613!10589-108D4;0.120615!10425-106D2;0.332263!10427-106D4;0.0615289!10702-109G9;0.280978!10432-106D9;0.179548!10496-107C1;0.43073!10718-109I7;0.985613!10011-101C2;0.45121!10053-101G8;0.0030935!10686-109F2;0.316058!10084-102B3;0.488906!10012-101C3;0.10434!10085-102B4;0.0619131!10482-107A5;0.0999049!10419-106C5;0.109011!10080-102A8;0.162241!10760-110E4;0.316205!10709-109H7;0.531129!10710-109H8;0.498671!10703-109H1;0.842499!10719-109I8;0.334614!10642-109A3;0.200203!10177-103C6;0.110227!10164-103B2;0.0651737!10173-103C2;0.0154264!10166-103B4;0.0307132!10083-102B2;0.0204681!10188-103D8;0.0516742!10552-107I3;0.0669931!10553-107I4;0.791035!10013-101C4;0.688301!10536-107G5;0.00539514!10618-108G6;0.0095795!10423-106C9;0.649383!10785-110H2;0.754269!12238-129G6;0.774056!12239-129G7;0.0106206!12240-129G8;0.0683797!10416-106C2;0.00522942!10801-110I9;0.506659!10766-110F1;0.0462641!10824-111C5;0.217011!10825-111C6;0.864455!10826-111C7;0.787145!10454-106G4;0.60233!10409-106B4;0.451107!10638-108I8;0.299462!10636-108I6;0.482043!10513-107D9;0.528713!10420-106C6;0.874577!10082-102B1;0.0797678!10014-101C5;0.0129113!10070-101I7;0.00748381!10452-106G2;0.0307526!10453-106G3;0.0200716!10449-106F8;0.0731739!10042-101F6;0.0966659!10069-101I6;0.0955751!10193-103E4;0.177326!10631-108I1;0.0553366!10438-106E6;0.36255!10488-107B2;0.665182!10196-103E7;0.0298875!10071-101I8;0.601943!10071-101I8;0.0745219!10041-101F5;0.10365!10451-106G1;0.104486!10450-106F9;0.0298305!10604-108F1;0.280138!10605-108F2;0.000902319!10606-108F3;0.0266587!10603-108E9;0.00267815!10497-107C2;0.00957478!10448-106F7;0.55582!10643-109A4;0.351364!10426-106D3;0.0836729!10431-106D8;0.0275532!10197-103E8;0.206537!10443-106F2;0.00241899!10815-111B5;0.901817!10816-111B6;0.705973!10817-111B7;0.220627!10015-101C6;0.509074!10410-106B5;0.00073107!10054-101G9;0.000365725!10758-110E2;0.161198!10711-109H9;0.370972!10040-101F4;0.0796089!10470-106I2;0.035928!10415-106C1;0.0190348!10198-103E9;0.545169!10614-108G2;0.0134958!10612-108F9;0.698754!10549-107H9;0.96913!10615-108G3;0.00369247!10487-107B1;0.0419138!10433-106E1;0.975052!10688-109F4;0.742614!10444-106F3;0.0662249!10444-106F3;0.104955!10485-107A8;0.150716!10413-106B8;0.82581!10175-103C4;0.189311!10161-103A8;0.0617997!12131-128D7;0.0113937!10624-108H3;2.25766e-05!10712-109I1;0.782185!10205-103F7;0.89323!10206-103F8;0.50538!10207-103F9;0.75824!10050-101G5;0.387943!10051-101G6;0.00111713!10016-101C7;0.0791597!10046-101G1;0.818952!10778-110G4;0.516438!10633-108I3;0.91476!10818-111B8;0.00808504!10819-111B9;0.259499!10820-111C1;0.358336!10484-107A7;0.281804!10808-111A7;0.0476054!10169-103B7;0.306377!10153-102I9;0.0447878!13425-144D5;0.018101!13433-144E4;0.788211!13437-144E8;0.607208!11904-125F5;0.976537!11905-125F6;0.0928335!10039-101F3;0.510801!10791-110H8;0.0424953!10017-101C8;0.860833!10045-101F9;0.0054887!10509-107D5;0.0153512!10839-111E2;0.000755682!10692-109F8;0.798052!10079-102A7;0.226929!10078-102A6;0.0145673!10721-110A1;0.035838!10569-108B2;0.000403007!10570-108B3;0.0969608!10571-108B4;0.176487!10647-109A8;0.10798!10752-110D5;0.0436506!10782-110G8;0.027129!10726-110A6;0.580329!10018-101C9;0.803401!10086-102B5;0.746197!10182-103D2;0.0360362!10165-103B3;0.0348735!10499-107C4;0.0228265!10408-106B3;0.0492018!10019-101D1;0.777686!10068-101I5;0.0231197!10075-102A3;0.131138!10077-102A5;0.00531483!10727-110A7;0.101647!10775-110G1;0.686188!10412-106B7;0.350301!12231-129F8;0.569686!12232-129F9;0.0155634!12233-129G1;0.0751216!12234-129G2;0.0985917!10414-106B9;0.0181379!10170-103B8;0.0403917!10183-103D3;0.058459!10150-102I6;0.0428633!10174-103C3;0.0172872!10155-103A2;0.234495!10038-101F2;0.0891616!10838-111E1;0.168577!10759-110E3;0.135608!10514-107E1;0.354706!10465-106H6;0.00838463!10691-109F7;0.463046!10843-111E6;0.213138!10844-111E7;0.122501!11747-123G1;0.177915!11748-123G2;0.0176877!11749-123G3;0.0741794!11750-123G4;0.00254554!11751-123G5;0.0141753!11840-124H4;0.0267122!11752-123G6;0.0140552!11753-123G7;0.139819!11754-123G8;0.0446913!11755-123G9;0.0188803!11756-123H1;0.0295331!11833-124G6;0.0504016!11760-123H5;0.470209!11836-124G9;0.0342553!11758-123H3;0.0333446!11835-124G8;0.0676408!11762-123H7;0.0944228!11838-124H2;0.0279471!11757-123H2;0.141416!11759-123H4;0.00195522!11761-123H6;0.02431!11842-124H6;0.0152569!11837-124H1;0.159435!10568-108B1;0.140273!13230-141I8;0.168258!13231-141I9;0.00965669!10696-109G3;0.0184766!10493-107B7;0.334818!10494-107B8;0.60267!10850-111F4;0.883237!10851-111F5;0.433065!10852-111F6;0.486201!10853-111F7;0.0590976!10854-111F8;0.768691!10855-111F9;0.418078!10856-111G1;0.031561!10847-111F1;0.468887!10846-111E9;0.11443!10848-111F2;0.530431!10845-111E8;0.215317!10857-111G2;0.251659!10858-111G3;0.700456!10156-103A3;0.776049!11901-125F2;0.016692!11902-125F3;0.402612!11903-125F4;0.0826466!10689-109F5;0.275192!10648-109A9;0.696658!10784-110H1;0.398106!10744-110C6;0.169035!10772-110F7;0.535082!10474-106I6;0.635923!10600-108E6;0.711479!10684-109E9;0.102881!12226-129F3;0.700341!12227-129F4;0.0337197!10508-107D4;7.06103e-06!10539-107G8;0.0111325!10607-108F4;0.0110163!10555-107I6;0.0732268!10774-110F9;0.0466107!10637-108I7;0.632663!10663-109C6;0.219114!10728-110A8;0.152072!10729-110A9;0.0918578!10430-106D7;0.535046!10730-110B1;0.0149745!10813-111B3;0.0777952!10812-111B2;0.0176496!10037-101F1;0.142995!10172-103C1;0.0447861!10163-103B1;0.0484908!10076-102A4;0.0105944!10073-102A1;0.0638296!10036-101E9;0.103326!10195-103E6;0.0479091!10277-104E7;0.0580494!10434-106E2;0.0234134!10550-107I1;0.0556182!10545-107H5;0.603525!10544-107H4;0.0706664!10704-109H2;0.19767!10510-107D6;0.744981!10558-107I9;0.0060361!10020-101D2;0.32405!10732-110B3;0.0193145!10049-101G4;0.587908!10698-109G5;0.53428!10437-106E5;0.0984427!10417-106C3;0.730898!10035-101E8;0.32798!10171-103B9;0.0363461!10157-103A4;0.0495758!10034-101E7;0.021364!10072-101I9;0.0337135!10199-103F1;0.0858316!10200-103F2;0.0326263!10697-109G4;0.0146757!10723-110A3;0.246068!10179-103C8;0.384939!10160-103A7;0.0302842!10180-103C9;0.0180177!10162-103A9;0.075771!10021-101D3;0.0422194!10840-111E3;0.007866!10706-109H4;0.283783!10033-101E6;0.60131!10032-101E5;0.0504135!10490-107B4;0.0453954!10439-106E7;0.245239!10022-101D4;0.492848!10176-103C5;0.00243047!10469-106I1;0.0151924!10067-101I4;0.473607!10411-106B6;0.661283!10471-106I3;0.0805275!10030-101E3;0.136725!10475-106I7;0.459341!10787-110H4;0.161902!10477-106I9;0.138871!10695-109G2;0.2305!11771-123I7;0.911013!11772-123I8;0.00134459!11773-123I9;0.00114757!10093-102C3;0.428166!10442-106F1;0.000582756!10442-106F1;0.878647!10201-103F3;0.881416!10639-108I9;0.2613!11843-124H7;0.527755!11841-124H5;0.617047!10693-109F9;0.512606!10436-106E4;0.372339!10483-107A6;0.470651!10282-104F3;0.361958!10023-101D5;0.39557!10066-101I3;0.493026!10065-101I2;0.0134003!10800-110I8;0.004729!10610-108F7;0.148708!10841-111E4;0.106703!10541-107H1;0.232425!10842-111E5;0.0531558!10562-108A4;0.180461!10024-101D6;0.178592!10064-101I1;0.0441404!10609-108F6;0.00255003!10048-101G3;0.0340466!10781-110G7;0.206836!10181-103D1;0.000481821!10159-103A6;0.155093!10056-101H2;0.0474212!10737-110B8;0.6966!10025-101D7;0.854884!10044-101F8;0.355416!10424-106D1;0.21132!10463-106H4;0.341431!10616-108G4;0.523417!10486-107A9;0.565859!10062-101H8;0.46841!10202-103F4;0.395288!10158-103A5;0.0554886!10441-106E9;0.0250882!10031-101E4;0.455788!10063-101H9;0.0643443!10063-101H9;0.0915732!11763-123H8;0.0115056!11765-123I1;0.0598299!11768-123I4;0.0401737!10807-111A6;0.022589!10790-110H7;0.142091!10798-110I6;0.238157!10786-110H3;0.741774!10591-108D6;0.725029!10593-108D8;0.628465!10590-108D5;0.55171!10026-101D8;0.389229!10096-102C6;0.139355!10168-103B6;0.442846!10154-103A1;0.0751452!10209-103G2;0.017819!10061-101H7;0.00114713!10027-101D9;0.0283564!10043-101F7;0.276479!10783-110G9;0.583539!10028-101E1;0.366428!10060-101H6;0.351275!10203-103F5;0.605156!10059-101H5;0.000360259!10047-101G2;0.000657127!10029-101E2;0.00610222!10058-101H4;0.00471741!10418-106C4;0.0210986!10492-107B6;0.902721!10694-109G1;0.838626!10797-110I5;0.502055!10057-101H3;0.116747!10100-102D1;0.00799039!10055-101H1;0.053669!10204-103F6;0.0371929!10191-103E2;0.912254!10563-108A5;0.01826
|name=12-CGCGGCGGCGGCT,CNhs11959,BestGuess:EGR1_f2_HM09(0.69303244198093),T:6852.0(74.70%),B:27632.3(68.98%),P:1e-33
|name=12-CGCGGCGGCGGCT,CNhs11959,BestGuess:EGR1_f2_HM09(0.69303244198093),T:6852.0(74.70%),B:27632.3(68.98%),P:1e-33
|tomtom_result=STP1#MA0394.1;0;0.000281542;0.134014;0.180269;8;CGCGGCGGCGGCT;TGCGGCGC;+!abi4#MA0123.1;0;0.000654162;0.311381;0.180269;10;CGCGGCGGCGGCT;GGGGGCACCG;-!Egr1#MA0162.1;0;0.000742361;0.353364;0.180269;11;CGCGGCGGCGGCT;TGCGTGGGCGT;+!IME1#MA0320.1;0;0.00104642;0.498098;0.180269;8;CGCGGCGGCGGCT;CTCGGCGG;-!STP2#MA0395.1;6;0.00116924;0.556556;0.180269;13;CGCGGCGGCGGCT;TCGTCGTGCGGCGCCGATCA;-!SUT1#MA0399.1;0;0.00125469;0.597231;0.180269;7;CGCGGCGGCGGCT;CGCGGGG;+!DAL81#MA0290.1;3;0.00134957;0.642396;0.180269;13;CGCGGCGGCGGCT;AATCCCGCCCGCGGCTTTT;-!NHLH1#MA0048.1;1;0.00194435;0.92551;0.227252;11;CGCGGCGGCGGCT;ACGCAGCTGCGC;-!Zfx#MA0146.1;0;0.00417927;1.98933;0.366842;13;CGCGGCGGCGGCT;GGGGCCGAGGCCTG;+!RPN4#MA0373.1;-3;0.00431567;2.05426;0.366842;7;CGCGGCGGCGGCT;GGTGGCG;+!RSC3#MA0374.1;0;0.00662796;3.15491;0.381051;7;CGCGGCGGCGGCT;CGCGCGG;+!CRZ1#MA0285.1;-1;0.00706205;3.36154;0.381051;9;CGCGGCGGCGGCT;GTGGCTTAG;-!RDS1#MA0361.1;-4;0.00787411;3.74808;0.381051;7;CGCGGCGGCGGCT;CCGGCCG;-!LEU3#MA0324.1;-1;0.00788345;3.75252;0.381051;10;CGCGGCGGCGGCT;CCGGTAACGG;-!Myf#MA0055.1;-2;0.00805393;3.83367;0.381051;11;CGCGGCGGCGGCT;CAGCAGCTGCTG;+!MET31#MA0333.1;-1;0.008698;4.14025;0.381051;9;CGCGGCGGCGGCT;GGTGTGGCG;+!brk#MA0213.1;-3;0.00974088;4.63666;0.381051;8;CGCGGCGGCGGCT;GGCGCCAG;-!btd#MA0443.1;-2;0.00981998;4.67431;0.381051;10;CGCGGCGGCGGCT;AGGGGGCGGA;+!UGA3#MA0410.1;-5;0.0100909;4.80328;0.381051;8;CGCGGCGGCGGCT;CGGCGGGA;+!opa#MA0456.1;-2;0.0101086;4.81172;0.381051;11;CGCGGCGGCGGCT;CAGCGGGGGGTC;-!CHA4#MA0283.1;-3;0.0108263;5.1533;0.381051;8;CGCGGCGGCGGCT;GGCGGAGA;+!TFAP2A#MA0003.1;0;0.0110119;5.24167;0.381051;9;CGCGGCGGCGGCT;CCCCCGGGC;-!SP1#MA0079.2;0;0.0111146;5.29054;0.381051;10;CGCGGCGGCGGCT;GGGGGCGGGG;-!UME6#MA0412.1;-4;0.0117576;5.59664;0.381051;9;CGCGGCGGCGGCT;TCGGCGGCTAATT;+!SP1#MA0079.2;-1;0.0118184;5.62554;0.381051;10;CGCGGCGGCGGCT;GGGGCGGGGT;+!Mafb#MA0117.1;-4;0.0137954;6.56663;0.427101;8;CGCGGCGGCGGCT;GCGTCAGC;-!YLL054C#MA0429.1;-5;0.0178695;8.50588;0.477384;7;CGCGGCGGCGGCT;CGGCCGA;+
}}
}}

Latest revision as of 12:49, 7 September 2012

Full Name: 12-CGCGGCGGCGGCT,CNhs11959,BestGuess:EGR1_f2_HM09(0.69303244198093),T:6852.0(74.70%),B:27632.3(68.98%),P:1e-33

Motif matrix
POACGT
1685.24796.4685.2685.2
2685.2685.24796.4685.2
3685.24796.4685.2685.2
4685.2685.24796.4685.2
5685.2685.24796.4685.2
6685.24796.4685.2685.2
7685.2685.24796.4685.2
8685.2685.24796.4685.2
9685.24796.4685.2685.2
10685.2685.24796.4685.2
11685.2685.24796.4685.2
12685.24796.4685.2685.2
13685.2685.2685.24796.4

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
STP1#MA0394.100.0002815420.1340140.1802698CGCGGCGGCGGCTTGCGGCGC+
abi4#MA0123.100.0006541620.3113810.18026910CGCGGCGGCGGCTGGGGGCACCG-
Egr1#MA0162.100.0007423610.3533640.18026911CGCGGCGGCGGCTTGCGTGGGCGT+
IME1#MA0320.100.001046420.4980980.1802698CGCGGCGGCGGCTCTCGGCGG-
STP2#MA0395.160.001169240.5565560.18026913CGCGGCGGCGGCTTCGTCGTGCGGCGCCGATCA-
SUT1#MA0399.100.001254690.5972310.1802697CGCGGCGGCGGCTCGCGGGG+
DAL81#MA0290.130.001349570.6423960.18026913CGCGGCGGCGGCTAATCCCGCCCGCGGCTTTT-
NHLH1#MA0048.110.001944350.925510.22725211CGCGGCGGCGGCTACGCAGCTGCGC-
Zfx#MA0146.100.004179271.989330.36684213CGCGGCGGCGGCTGGGGCCGAGGCCTG+
RPN4#MA0373.1-30.004315672.054260.3668427CGCGGCGGCGGCTGGTGGCG+
RSC3#MA0374.100.006627963.154910.3810517CGCGGCGGCGGCTCGCGCGG+
CRZ1#MA0285.1-10.007062053.361540.3810519CGCGGCGGCGGCTGTGGCTTAG-
RDS1#MA0361.1-40.007874113.748080.3810517CGCGGCGGCGGCTCCGGCCG-
LEU3#MA0324.1-10.007883453.752520.38105110CGCGGCGGCGGCTCCGGTAACGG-
Myf#MA0055.1-20.008053933.833670.38105111CGCGGCGGCGGCTCAGCAGCTGCTG+
MET31#MA0333.1-10.0086984.140250.3810519CGCGGCGGCGGCTGGTGTGGCG+
brk#MA0213.1-30.009740884.636660.3810518CGCGGCGGCGGCTGGCGCCAG-
btd#MA0443.1-20.009819984.674310.38105110CGCGGCGGCGGCTAGGGGGCGGA+
UGA3#MA0410.1-50.01009094.803280.3810518CGCGGCGGCGGCTCGGCGGGA+
opa#MA0456.1-20.01010864.811720.38105111CGCGGCGGCGGCTCAGCGGGGGGTC-
CHA4#MA0283.1-30.01082635.15330.3810518CGCGGCGGCGGCTGGCGGAGA+
TFAP2A#MA0003.100.01101195.241670.3810519CGCGGCGGCGGCTCCCCCGGGC-
SP1#MA0079.200.01111465.290540.38105110CGCGGCGGCGGCTGGGGGCGGGG-
UME6#MA0412.1-40.01175765.596640.3810519CGCGGCGGCGGCTTCGGCGGCTAATT+
SP1#MA0079.2-10.01181845.625540.38105110CGCGGCGGCGGCTGGGGCGGGGT+
Mafb#MA0117.1-40.01379546.566630.4271018CGCGGCGGCGGCTGCGTCAGC-
YLL054C#MA0429.1-50.01786958.505880.4773847CGCGGCGGCGGCTCGGCCGA+
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