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MacroAPE 1083:14-ATTACGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2207.7;759.0;260.7;72.6!2;3.3;264.0;3.3;3029.4!3;1125.3;3.3;273.9;1897.5!4;2425.5;3.3;867.9;3.3!5;3.3;2841.3;452.1;3.3!6;795.3;3.3;2498.1;3....")
 
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8;0.261416!10597-108E3;0.791066!10717-109I6;0.0649227!10455-106G5;0.252858!10534-107G3;0.0163905!10429-106D6;0.043237!10464-106H5;0.0214154!10827-111C8;0.0544093!10789-110H6;0.0431049!10828-111C9;0.0596678!10788-110H5;0.0980227!10792-110H9;0.160046!10765-110E9;0.0248962!10829-111D1;0.0747141!10830-111D2;0.0682023!10831-111D3;0.0286519!10832-111D4;0.0456393!10833-111D5;0.0337645!10764-110E8;0.0292633!10770-110F5;0.00014977!10399-106A3;0.0163433!10400-106A4;0.0244182!10405-106A9;0.0289799!10834-111D6;0.0273778!10835-111D7;0.0295652!10836-111D8;0.0553934!10837-111D9;0.0409867!10699-109G6;0.074207!10802-111A1;0.0181167!10796-110I4;0.106496!10010-101C1;0.288149!10810-111A9;0.139361!10421-106C7;0.639389!10708-109H6;0.0916673!12235-129G3;0.43234!12236-129G4;0.970126!12237-129G5;0.186718!10167-103B5;0.205439!10151-102I7;0.502196!10428-106D5;0.506539!10795-110I3;0.762837!10805-111A4;0.247417!10052-101G7;0.0246443!10189-103D9;0.125913!10589-108D4;0.66117!10425-106D2;0.076091!10427-106D4;0.812007!10702-109G9;0.282394!10432-106D9;0.0722242!10496-107C1;0.244064!10718-109I7;0.470623!10011-101C2;0.0224302!10053-101G8;0.0553203!10686-109F2;0.0691525!10084-102B3;0.173958!10012-101C3;0.427307!10085-102B4;0.356927!10482-107A5;0.731418!10419-106C5;0.056622!10080-102A8;0.0253922!10760-110E4;0.491309!10709-109H7;0.368189!10710-109H8;0.864109!10703-109H1;0.490878!10719-109I8;0.0632869!10642-109A3;0.0696568!10177-103C6;0.140245!10164-103B2;0.52134!10173-103C2;0.491522!10166-103B4;0.83074!10083-102B2;0.61653!10188-103D8;0.680373!10552-107I3;0.271907!10553-107I4;0.287625!10013-101C4;0.13964!10536-107G5;0.0750184!10618-108G6;0.972803!10423-106C9;0.0114672!10785-110H2;0.0661731!12238-129G6;0.144643!12239-129G7;0.650336!12240-129G8;0.252173!10416-106C2;0.177405!10801-110I9;0.167567!10766-110F1;0.117859!10824-111C5;0.0494065!10825-111C6;0.0982353!10826-111C7;0.0953535!10454-106G4;0.0908973!10409-106B4;0.122291!10638-108I8;0.0874092!10636-108I6;0.490812!10513-107D9;0.119368!10420-106C6;0.193836!10082-102B1;0.0520323!10014-101C5;0.121319!10070-101I7;0.0134237!10452-106G2;0.119374!10453-106G3;0.155523!10449-106F8;0.452721!10042-101F6;0.411371!10069-101I6;0.838079!10193-103E4;0.155884!10631-108I1;0.689386!10438-106E6;0.0680449!10488-107B2;0.280833!10196-103E7;0.713584!10071-101I8;0.0269319!10071-101I8;0.544017!10041-101F5;0.853355!10451-106G1;0.363528!10450-106F9;0.250932!10604-108F1;0.290847!10605-108F2;0.300877!10606-108F3;0.333499!10603-108E9;0.265274!10497-107C2;0.390106!10448-106F7;0.962141!10643-109A4;0.908277!10426-106D3;0.486461!10431-106D8;0.14104!10197-103E8;0.0951612!10443-106F2;0.0607447!10815-111B5;0.169076!10816-111B6;0.380106!10817-111B7;0.259596!10015-101C6;0.383407!10410-106B5;0.0254861!10054-101G9;0.533216!10758-110E2;0.120247!10711-109H9;0.0608875!10040-101F4;0.178197!10470-106I2;0.471507!10415-106C1;0.693071!10198-103E9;0.703464!10614-108G2;0.0740233!10612-108F9;0.996549!10549-107H9;0.236349!10615-108G3;0.344361!10487-107B1;0.0532836!10433-106E1;0.285444!10688-109F4;0.874898!10444-106F3;0.18697!10444-106F3;0.186787!10485-107A8;0.193185!10413-106B8;0.322149!10175-103C4;0.666039!10161-103A8;0.792125!12131-128D7;0.808637!10624-108H3;0.00303999!10712-109I1;0.517649!10205-103F7;0.867891!10206-103F8;0.0651438!10207-103F9;0.0476819!10050-101G5;0.221175!10051-101G6;0.29373!10016-101C7;0.0383342!10046-101G1;0.0389948!10778-110G4;0.116171!10633-108I3;0.0787759!10818-111B8;0.043612!10819-111B9;0.369116!10820-111C1;0.43739!10484-107A7;0.371934!10808-111A7;0.970756!10169-103B7;0.194189!10153-102I9;0.513143!13425-144D5;0.485633!13433-144E4;0.372853!13437-144E8;0.577147!11904-125F5;0.800712!11905-125F6;0.034052!10039-101F3;0.0494899!10791-110H8;0.475833!10017-101C8;0.523227!10045-101F9;0.00531782!10509-107D5;0.0859233!10839-111E2;0.592624!10692-109F8;0.788573!10079-102A7;0.0857831!10078-102A6;0.0366595!10721-110A1;0.0212664!10569-108B2;0.945702!10570-108B3;0.0565812!10571-108B4;0.0289247!10647-109A8;0.11799!10752-110D5;0.694526!10782-110G8;0.102275!10726-110A6;0.0987685!10018-101C9;0.34408!10086-102B5;0.363724!10182-103D2;0.573566!10165-103B3;0.59317!10499-107C4;0.72013!10408-106B3;0.839381!10019-101D1;0.526681!10068-101I5;0.2106!10075-102A3;0.21933!10077-102A5;0.238722!10727-110A7;0.921047!10775-110G1;0.261348!10412-106B7;0.179846!12231-129F8;0.02945!12232-129F9;0.712409!12233-129G1;0.398248!12234-129G2;0.435355!10414-106B9;0.374696!10170-103B8;0.328147!10183-103D3;0.505483!10150-102I6;0.364551!10174-103C3;0.423912!10155-103A2;0.478869!10038-101F2;0.538462!10838-111E1;0.688986!10759-110E3;0.405207!10514-107E1;0.829981!10465-106H6;0.58096!10691-109F7;0.275472!10843-111E6;0.333955!10844-111E7;0.148447!11747-123G1;0.0117023!11748-123G2;0.0962054!11749-123G3;0.144291!11750-123G4;0.0459667!11751-123G5;0.103313!11840-124H4;0.0277677!11752-123G6;0.0429488!11753-123G7;0.0023053!11754-123G8;0.0530883!11755-123G9;0.0424596!11756-123H1;0.0178193!11833-124G6;0.108738!11760-123H5;0.0716914!11836-124G9;0.0548997!11758-123H3;0.0156018!11835-124G8;0.0434246!11762-123H7;0.0318288!11838-124H2;0.185819!11757-123H2;0.0506815!11759-123H4;0.166997!11761-123H6;0.0716705!11842-124H6;0.0644409!11837-124H1;0.0329139!10568-108B1;0.0216023!13230-141I8;0.11463!13231-141I9;0.134948!10696-109G3;0.163905!10493-107B7;0.222051!10494-107B8;0.928214!10850-111F4;0.856307!10851-111F5;0.796721!10852-111F6;0.778501!10853-111F7;0.895052!10854-111F8;0.825643!10855-111F9;0.356575!10856-111G1;0.785878!10847-111F1;0.975242!10846-111E9;0.200134!10848-111F2;0.501706!10845-111E8;0.180458!10857-111G2;0.222836!10858-111G3;0.786566!10156-103A3;0.642025!11901-125F2;0.484967!11902-125F3;0.0472682!11903-125F4;0.00836581!10689-109F5;0.0279793!10648-109A9;0.899272!10784-110H1;0.463067!10744-110C6;0.222581!10772-110F7;0.126604!10474-106I6;0.0439155!10600-108E6;0.324044!10684-109E9;0.240398!12226-129F3;0.242804!12227-129F4;0.520726!10508-107D4;0.667399!10539-107G8;0.155506!10607-108F4;0.333014!10555-107I6;0.0931201!10774-110F9;0.0973853!10637-108I7;0.622229!10663-109C6;0.296047!10728-110A8;0.0316677!10729-110A9;0.0506056!10430-106D7;0.181508!10730-110B1;0.0281576!10813-111B3;0.563462!10812-111B2;0.383955!10037-101F1;0.112351!10172-103C1;0.477029!10163-103B1;0.493287!10076-102A4;0.545083!10073-102A1;0.492267!10036-101E9;0.925571!10195-103E6;0.514307!10277-104E7;0.458651!10434-106E2;0.74275!10550-107I1;0.103222!10545-107H5;0.0593152!10544-107H4;0.471066!10704-109H2;0.448403!10510-107D6;0.809476!10558-107I9;0.300753!10020-101D2;0.165241!10732-110B3;0.189748!10049-101G4;0.800954!10698-109G5;0.588514!10437-106E5;0.132048!10417-106C3;0.297192!10035-101E8;0.201624!10171-103B9;0.472169!10157-103A4;0.430646!10034-101E7;0.467148!10072-101I9;0.473256!10199-103F1;0.781472!10200-103F2;0.0784876!10697-109G4;0.0913244!10723-110A3;0.937174!10179-103C8;0.406594!10160-103A7;0.18159!10180-103C9;0.248089!10162-103A9;0.620608!10021-101D3;0.707886!10840-111E3;0.246439!10706-109H4;0.240921!10033-101E6;0.916437!10032-101E5;0.60155!10490-107B4;0.444546!10439-106E7;0.584134!10022-101D4;0.101492!10176-103C5;0.15623!10469-106I1;0.63528!10067-101I4;0.486137!10411-106B6;0.427171!10471-106I3;0.881519!10030-101E3;0.175463!10475-106I7;0.0832889!10787-110H4;0.270031!10477-106I9;0.776545!10695-109G2;0.419419!11771-123I7;0.228201!11772-123I8;0.415318!11773-123I9;0.587929!10093-102C3;0.467418!10442-106F1;0.244875!10442-106F1;0.941046!10201-103F3;0.980483!10639-108I9;0.0414703!11843-124H7;0.899226!11841-124H5;0.0851449!10693-109F9;0.380936!10436-106E4;0.0740997!10483-107A6;0.252657!10282-104F3;0.33157!10023-101D5;0.092581!10066-101I3;0.0502918!10065-101I2;0.143306!10800-110I8;0.190494!10610-108F7;0.0390556!10841-111E4;0.0248209!10541-107H1;0.382976!10842-111E5;0.0688055!10562-108A4;0.126344!10024-101D6;0.0345866!10064-101I1;0.0331026!10609-108F6;0.218745!10048-101G3;0.190995!10781-110G7;0.0259626!10181-103D1;0.284197!10159-103A6;0.524577!10056-101H2;0.511705!10737-110B8;0.360393!10025-101D7;0.318705!10044-101F8;0.582448!10424-106D1;0.832074!10463-106H4;0.12803!10616-108G4;0.155012!10486-107A9;0.690039!10062-101H8;0.311389!10202-103F4;0.950167!10158-103A5;0.0536173!10441-106E9;0.905484!10031-101E4;0.540635!10063-101H9;0.478762!10063-101H9;0.887357!11763-123H8;0.149934!11765-123I1;0.183325!11768-123I4;0.132928!10807-111A6;0.276337!10790-110H7;0.429098!10798-110I6;0.289413!10786-110H3;0.381439!10591-108D6;0.468541!10593-108D8;0.413201!10590-108D5;0.7018!10026-101D8;0.67376!10096-102C6;0.22992!10168-103B6;0.7187!10154-103A1;0.700329!10209-103G2;0.76658!10061-101H7;0.104474!10027-101D9;0.0647297!10043-101F7;0.412671!10783-110G9;0.670534!10028-101E1;0.643305!10060-101H6;0.111776!10203-103F5;0.296681!10059-101H5;0.0889381!10047-101G2;0.194139!10029-101E2;0.574547!10058-101H4;0.322451!10418-106C4;0.28458!10492-107B6;0.0255564!10694-109G1;0.412182!10797-110I5;0.304023!10057-101H3;0.566672!10100-102D1;0.540632!10055-101H1;0.0721342!10204-103F6;0.164838!10191-103E2;0.214105!10563-108A5;0.257655
|name=14-ATTACGC,CNhs12549,BestGuess:CEBPE_f1_HM09(0.709655510778844),T:3300.0(40.34%),B:13020.1(32.23%),P:1e-53
|name=14-ATTACGC,CNhs12549,BestGuess:CEBPE_f1_HM09(0.709655510778844),T:3300.0(40.34%),B:13020.1(32.23%),P:1e-53
|tomtom_result=YAP3#MA0416.1;0;0.00181419;0.863555;0.829599;7;ATTACGC;ATTACGTA;+!HLF#MA0043.1;1;0.00253739;1.2078;0.829599;7;ATTACGC;GGTTACGCAATT;+!gt#MA0447.1;0;0.00445426;2.12023;0.829599;7;ATTACGC;ATTACGTAAT;+!SKO1#MA0382.1;1;0.00484563;2.30652;0.829599;7;ATTACGC;CATTACGT;-!CIN5#MA0284.1;1;0.00610154;2.90433;0.829599;7;ATTACGC;GATTACGTAA;-!CEBPA#MA0102.2;0;0.00859805;4.09267;0.831137;7;ATTACGC;ATTGCGAAA;-!slbo#MA0244.1;0;0.00873265;4.15674;0.831137;7;ATTACGC;ATTGCAAA;+!HMRA2#MA0318.1;0;0.00873265;4.15674;0.831137;7;ATTACGC;ATTACATG;-!YAP6#MA0418.1;6;0.0121117;5.76515;0.999747;7;ATTACGC;GGTCTGATTACGTAAGCGAC;+!STP4#MA0397.1;1;0.0142884;6.80126;0.999747;7;ATTACGC;GATAGCGCA;+!Cebpa#MA0102.1;3;0.0158837;7.56066;0.999747;7;ATTACGC;GAGATTGCGAAA;-!mab-3#MA0262.1;0;0.0183004;8.71098;0.999747;7;ATTACGC;AATTCGCAACATT;-!Ubx#MA0094.1;0;0.0201058;9.57037;0.999747;4;ATTACGC;ATTA;-
}}
}}

Latest revision as of 12:51, 7 September 2012

Full Name: 14-ATTACGC,CNhs12549,BestGuess:CEBPE_f1_HM09(0.709655510778844),T:3300.0(40.34%),B:13020.1(32.23%),P:1e-53

Motif matrix
POACGT
12207.7759.0260.772.6
23.3264.03.33029.4
31125.33.3273.91897.5
42425.53.3867.93.3
53.32841.3452.13.3
6795.33.32498.13.3
7273.92042.7372.9610.5

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YAP3#MA0416.100.001814190.8635550.8295997ATTACGCATTACGTA+
HLF#MA0043.110.002537391.20780.8295997ATTACGCGGTTACGCAATT+
gt#MA0447.100.004454262.120230.8295997ATTACGCATTACGTAAT+
SKO1#MA0382.110.004845632.306520.8295997ATTACGCCATTACGT-
CIN5#MA0284.110.006101542.904330.8295997ATTACGCGATTACGTAA-
CEBPA#MA0102.200.008598054.092670.8311377ATTACGCATTGCGAAA-
slbo#MA0244.100.008732654.156740.8311377ATTACGCATTGCAAA+
HMRA2#MA0318.100.008732654.156740.8311377ATTACGCATTACATG-
YAP6#MA0418.160.01211175.765150.9997477ATTACGCGGTCTGATTACGTAAGCGAC+
STP4#MA0397.110.01428846.801260.9997477ATTACGCGATAGCGCA+
Cebpa#MA0102.130.01588377.560660.9997477ATTACGCGAGATTGCGAAA-
mab-3#MA0262.100.01830048.710980.9997477ATTACGCAATTCGCAACATT-
Ubx#MA0094.100.02010589.570370.9997474ATTACGCATTA-
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