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MacroAPE 1083:CCCCCTATTA,motif248: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;125.944;989.56;128.712;139.784!2;124.56;1017.24;105.184;137.016!3;121.792;966.032;131.48;164.696!4;95.496;990.944;141.168;156.392!5;135.632;...")
 
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792!11600-120H7;0.168742!11681-122H7;0.511286!11216-116B1;0.490956!12179-129A1;0.593093!12180-129A2;9.69348e-05!12181-129A3;7.36014e-05!12176-128I7;1.18635e-05!12177-128I8;8.50533e-06!12182-129A4;8.96264e-05!12183-129A5;1.68635e-05!12184-129A6;0.000230434!10809-111A8;0.000170918!10597-108E3;0.0035856!10717-109I6;0.712039!10455-106G5;0.596868!10534-107G3;0.230149!10429-106D6;0.385856!10464-106H5;0.416236!10827-111C8;0.746868!10789-110H6;0.817649!10828-111C9;0.160083!10788-110H5;0.0800524!10792-110H9;0.386971!10765-110E9;0.213097!10829-111D1;0.072706!10830-111D2;0.326283!10831-111D3;0.115796!10832-111D4;0.366073!10833-111D5;0.257057!10764-110E8;0.178899!10770-110F5;0.580819!10399-106A3;0.665649!10400-106A4;0.449877!10405-106A9;0.369563!10834-111D6;0.477748!10835-111D7;0.312322!10836-111D8;0.667897!10837-111D9;0.598131!10699-109G6;0.0410194!10802-111A1;0.0184484!10796-110I4;0.265616!10010-101C1;0.86013!10810-111A9;0.535091!10421-106C7;0.300043!10708-109H6;0.102958!12235-129G3;0.181751!12236-129G4;0.899247!12237-129G5;0.797021!10167-103B5;0.43949!10151-102I7;0.429385!10428-106D5;0.323554!10795-110I3;0.990239!10805-111A4;0.386973!10052-101G7;0.830908!10189-103D9;0.705823!10589-108D4;0.9056!10425-106D2;0.691083!10427-106D4;0.0123838!10702-109G9;0.0617907!10432-106D9;0.740531!10496-107C1;0.623046!10718-109I7;0.455069!10011-101C2;0.409356!10053-101G8;0.634003!10686-109F2;0.00558622!10084-102B3;0.623046!10012-101C3;0.748576!10085-102B4;0.293848!10482-107A5;0.469321!10419-106C5;0.573192!10080-102A8;0.74152!10760-110E4;0.691327!10709-109H7;0.726185!10710-109H8;0.706493!10703-109H1;0.656229!10719-109I8;0.452748!10642-109A3;0.335813!10177-103C6;0.218795!10164-103B2;0.268543!10173-103C2;0.0741021!10166-103B4;0.640529!10083-102B2;0.34278!10188-103D8;0.567122!10552-107I3;0.531471!10553-107I4;0.654609!10013-101C4;0.845844!10536-107G5;0.708984!10618-108G6;0.153997!10423-106C9;0.53066!10785-110H2;0.705984!12238-129G6;0.921238!12239-129G7;0.743465!12240-129G8;0.0583099!10416-106C2;0.752921!10801-110I9;0.643601!10766-110F1;0.175458!10824-111C5;0.0849388!10825-111C6;0.863103!10826-111C7;0.81761!10454-106G4;0.81274!10409-106B4;0.96503!10638-108I8;0.172211!10636-108I6;0.494587!10513-107D9;0.24052!10420-106C6;0.863924!10082-102B1;0.774628!10014-101C5;0.760329!10070-101I7;0.997552!10452-106G2;0.574582!10453-106G3;0.64239!10449-106F8;0.798183!10042-101F6;0.857996!10069-101I6;0.6299!10193-103E4;0.636756!10631-108I1;0.26241!10438-106E6;0.102013!10488-107B2;0.706145!10196-103E7;0.239988!10071-101I8;0.239032!10071-101I8;0.648392!10041-101F5;0.68776!10451-106G1;0.750233!10450-106F9;0.118647!10604-108F1;0.00505362!10605-108F2;0.0288394!10606-108F3;0.142888!10603-108E9;0.0557226!10497-107C2;0.150593!10448-106F7;0.0945926!10643-109A4;0.371475!10426-106D3;0.354898!10431-106D8;0.681715!10197-103E8;0.33685!10443-106F2;0.729938!10815-111B5;0.0347466!10816-111B6;0.509604!10817-111B7;0.528214!10015-101C6;0.515164!10410-106B5;0.719705!10054-101G9;0.279695!10758-110E2;0.520166!10711-109H9;0.0652147!10040-101F4;0.328596!10470-106I2;0.351594!10415-106C1;0.773922!10198-103E9;0.355053!10614-108G2;0.946549!10612-108F9;0.984116!10549-107H9;0.50954!10615-108G3;0.428231!10487-107B1;0.98613!10433-106E1;0.86129!10688-109F4;0.117992!10444-106F3;0.816845!10444-106F3;0.00440392!10485-107A8;0.00498759!10413-106B8;0.410628!10175-103C4;0.156168!10161-103A8;0.266987!12131-128D7;0.290615!10624-108H3;0.0199106!10712-109I1;0.704662!10205-103F7;0.465106!10206-103F8;0.92759!10207-103F9;0.987723!10050-101G5;0.953412!10051-101G6;0.0634707!10016-101C7;0.587217!10046-101G1;0.89335!10778-110G4;0.619361!10633-108I3;0.24695!10818-111B8;0.476471!10819-111B9;0.937437!10820-111C1;0.954665!10484-107A7;0.904118!10808-111A7;0.214507!10169-103B7;0.344515!10153-102I9;0.488251!13425-144D5;0.302779!13433-144E4;0.0800334!13437-144E8;0.0783475!11904-125F5;0.0975801!11905-125F6;0.000371989!10039-101F3;0.00109537!10791-110H8;0.348758!10017-101C8;0.482787!10045-101F9;0.859567!10509-107D5;0.428713!10839-111E2;0.675798!10692-109F8;0.837975!10079-102A7;0.00437908!10078-102A6;0.705371!10721-110A1;0.617243!10569-108B2;0.0977682!10570-108B3;0.12584!10571-108B4;0.320448!10647-109A8;0.0582585!10752-110D5;1.35804e-05!10782-110G8;0.209868!10726-110A6;0.0601144!10018-101C9;6.35654e-06!10086-102B5;0.4006!10182-103D2;0.0737454!10165-103B3;0.977057!10499-107C4;0.49792!10408-106B3;0.29489!10019-101D1;0.938012!10068-101I5;0.578244!10075-102A3;0.670272!10077-102A5;0.300144!10727-110A7;0.214741!10775-110G1;0.324291!10412-106B7;0.413374!12231-129F8;0.975555!12232-129F9;0.431335!12233-129G1;0.234283!12234-129G2;0.289064!10414-106B9;0.239633!10170-103B8;0.897374!10183-103D3;0.450702!10150-102I6;0.359847!10174-103C3;0.23144!10155-103A2;0.949773!10038-101F2;0.551622!10838-111E1;0.889252!10759-110E3;0.895119!10514-107E1;0.0026278!10465-106H6;0.794682!10691-109F7;0.616859!10843-111E6;0.762456!10844-111E7;0.329597!11747-123G1;0.597831!11748-123G2;0.0670291!11749-123G3;0.0976552!11750-123G4;0.127304!11751-123G5;0.213915!11840-124H4;0.630652!11752-123G6;0.344921!11753-123G7;0.307918!11754-123G8;0.760177!11755-123G9;0.0899704!11756-123H1;0.0381024!11833-124G6;0.248699!11760-123H5;0.0600845!11836-124G9;0.0437988!11758-123H3;0.100601!11835-124G8;0.163159!11762-123H7;0.0353019!11838-124H2;0.436347!11757-123H2;0.309635!11759-123H4;0.298785!11761-123H6;0.294493!11842-124H6;0.0662889!11837-124H1;0.3066!10568-108B1;0.129492!13230-141I8;0.095679!13231-141I9;0.0567909!10696-109G3;0.0707362!10493-107B7;0.369294!10494-107B8;0.119621!10850-111F4;0.0151593!10851-111F5;0.000643185!10852-111F6;0.208479!10853-111F7;0.0788255!10854-111F8;0.000799676!10855-111F9;0.359701!10856-111G1;0.0331005!10847-111F1;0.0593767!10846-111E9;0.515803!10848-111F2;0.332425!10845-111E8;0.167594!10857-111G2;0.202934!10858-111G3;0.0102382!10156-103A3;0.000574507!11901-125F2;0.281659!11902-125F3;5.6346e-05!11903-125F4;0.000249395!10689-109F5;0.000826621!10648-109A9;2.76676e-05!10784-110H1;0.352149!10744-110C6;0.766619!10772-110F7;0.2147!10474-106I6;0.507402!10600-108E6;0.237959!10684-109E9;0.0159004!12226-129F3;0.796117!12227-129F4;0.724423!10508-107D4;0.351172!10539-107G8;0.734176!10607-108F4;0.514965!10555-107I6;0.748166!10774-110F9;0.645241!10637-108I7;0.86422!10663-109C6;0.2815!10728-110A8;0.26417!10729-110A9;0.0718223!10430-106D7;0.395197!10730-110B1;0.111443!10813-111B3;0.265274!10812-111B2;0.156219!10037-101F1;0.00185106!10172-103C1;0.3572!10163-103B1;0.461687!10076-102A4;0.217106!10073-102A1;0.410603!10036-101E9;0.47235!10195-103E6;0.453786!10277-104E7;0.344442!10434-106E2;0.463262!10550-107I1;0.71691!10545-107H5;0.507887!10544-107H4;0.657431!10704-109H2;0.882129!10510-107D6;0.50703!10558-107I9;0.00809599!10020-101D2;0.234701!10732-110B3;0.832912!10049-101G4;0.00895659!10698-109G5;0.0441808!10437-106E5;0.959267!10417-106C3;0.743329!10035-101E8;0.453041!10171-103B9;0.420237!10157-103A4;0.473416!10034-101E7;0.209729!10072-101I9;0.353572!10199-103F1;0.522743!10200-103F2;0.372859!10697-109G4;0.806214!10723-110A3;0.736554!10179-103C8;0.687398!10160-103A7;0.465616!10180-103C9;0.442041!10162-103A9;0.315257!10021-101D3;0.100731!10840-111E3;0.115953!10706-109H4;0.257285!10033-101E6;0.170208!10032-101E5;0.784171!10490-107B4;0.399538!10439-106E7;0.795423!10022-101D4;0.0099987!10176-103C5;0.368575!10469-106I1;0.114756!10067-101I4;0.591176!10411-106B6;0.503417!10471-106I3;0.923794!10030-101E3;0.380785!10475-106I7;0.750869!10787-110H4;0.953399!10477-106I9;0.000136888!10695-109G2;0.024453!11771-123I7;0.202967!11772-123I8;0.483449!11773-123I9;0.161897!10093-102C3;0.258164!10442-106F1;0.347534!10442-106F1;0.157753!10201-103F3;0.133126!10639-108I9;0.169161!11843-124H7;0.896252!11841-124H5;0.142586!10693-109F9;0.137584!10436-106E4;0.681787!10483-107A6;0.709416!10282-104F3;0.663748!10023-101D5;0.895853!10066-101I3;0.402092!10065-101I2;0.0894541!10800-110I8;0.602992!10610-108F7;0.107875!10841-111E4;0.655996!10541-107H1;0.00877677!10842-111E5;0.784588!10562-108A4;0.89179!10024-101D6;0.962189!10064-101I1;0.948683!10609-108F6;0.430201!10048-101G3;0.38301!10781-110G7;0.570981!10181-103D1;0.58342!10159-103A6;0.924819!10056-101H2;0.3544!10737-110B8;0.205701!10025-101D7;0.120098!10044-101F8;0.928203!10424-106D1;0.803648!10463-106H4;0.0117968!10616-108G4;0.344596!10486-107A9;0.92867!10062-101H8;0.878328!10202-103F4;0.41662!10158-103A5;0.301672!10441-106E9;0.269504!10031-101E4;0.0671314!10063-101H9;0.487629!10063-101H9;0.582075!11763-123H8;0.763809!11765-123I1;0.0558993!11768-123I4;0.475699!10807-111A6;0.370575!10790-110H7;0.0387671!10798-110I6;0.113441!10786-110H3;0.479976!10591-108D6;0.390866!10593-108D8;0.58775!10590-108D5;0.599048!10026-101D8;0.276094!10096-102C6;0.973502!10168-103B6;0.627553!10154-103A1;0.782672!10209-103G2;0.19751!10061-101H7;0.458583!10027-101D9;0.798335!10043-101F7;0.0127982!10783-110G9;0.0986394!10028-101E1;0.919818!10060-101H6;0.573585!10203-103F5;0.91592!10059-101H5;0.405637!10047-101G2;0.914507!10029-101E2;0.164427!10058-101H4;0.651025!10418-106C4;0.837786!10492-107B6;0.135006!10694-109G1;0.680484!10797-110I5;0.0335979!10057-101H3;0.749879!10100-102D1;0.113845!10055-101H1;0.77043!10204-103F6;0.82985!10191-103E2;0.253399!10563-108A5;0.514937
|name=CCCCCTATTA,motif248,CNhs11772,T:1384.0(40.03%),B:20640.3(29.61%),P:1e-38
|name=CCCCCTATTA,motif248,CNhs11772,T:1384.0(40.03%),B:20640.3(29.61%),P:1e-38
|tomtom_result=YER130C#MA0423.1;0;2.74954e-05;0.0130878;0.0261413;9;CCCCCTATTA;ACCCCTATT;+!GIS1#MA0306.1;0;0.000413674;0.196909;0.135179;9;CCCCCTATTA;ACCCCTAAA;+!MSN4#MA0342.1;-1;0.000568723;0.270712;0.135179;5;CCCCCTATTA;CCCCT;-!RGM1#MA0366.1;-1;0.000568723;0.270712;0.135179;5;CCCCCTATTA;CCCCT;-!MSN2#MA0341.1;-1;0.000797227;0.37948;0.151593;5;CCCCCTATTA;CCCCT;-!RPH1#MA0372.1;0;0.00491681;2.3404;0.779112;8;CCCCCTATTA;ACCCCTAA;+!MZF1_5-13#MA0057.1;2;0.00625329;2.97657;0.814651;8;CCCCCTATTA;TTCCCCCTAC;-!TBP#MA0108.2;2;0.00827029;3.93666;0.814651;10;CCCCCTATTA;CCCCGCCTTTTATAC;-!AG#MA0005.1;-1;0.00834318;3.97136;0.814651;9;CCCCCTATTA;ACCAAATTTGG;-!TBP#MA0108.2;2;0.00856848;4.07859;0.814651;10;CCCCCTATTA;CCCCGCCTTTTATAC;-!YML081W#MA0431.1;0;0.0113411;5.39837;0.968118;9;CCCCCTATTA;ACCCCGCAC;+!RDS2#MA0362.1;-1;0.0130334;6.20391;0.968118;7;CCCCCTATTA;CCCCGAG;-!MCM1#MA0331.1;-2;0.0132374;6.30102;0.968118;8;CCCCCTATTA;CCCAATTAGGAA;+!YGR067C#MA0425.1;2;0.0149305;7.10693;0.993416;10;CCCCCTATTA;ACCCCACTTTTTTG;+!Klf4#MA0039.1;0;0.0159722;7.60277;0.993416;10;CCCCCTATTA;CCTTCCTTTA;-!Dr#MA0188.1;-3;0.0167179;7.95774;0.993416;7;CCCCCTATTA;CCAATTA;+
}}
}}

Latest revision as of 12:56, 7 September 2012

Full Name: CCCCCTATTA,motif248,CNhs11772,T:1384.0(40.03%),B:20640.3(29.61%),P:1e-38

Motif matrix
POACGT
1125.944989.56128.712139.784
2124.561017.24105.184137.016
3121.792966.032131.48164.696
495.496990.944141.168156.392
5135.632977.104125.944145.32
6137.016153.624142.552950.808
7923.128150.856130.096179.92
8128.712146.704131.48977.104
9148.088138.4123.176974.336
10927.28146.704132.864177.152

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YER130C#MA0423.102.74954e-050.01308780.02614139CCCCCTATTAACCCCTATT+
GIS1#MA0306.100.0004136740.1969090.1351799CCCCCTATTAACCCCTAAA+
MSN4#MA0342.1-10.0005687230.2707120.1351795CCCCCTATTACCCCT-
RGM1#MA0366.1-10.0005687230.2707120.1351795CCCCCTATTACCCCT-
MSN2#MA0341.1-10.0007972270.379480.1515935CCCCCTATTACCCCT-
RPH1#MA0372.100.004916812.34040.7791128CCCCCTATTAACCCCTAA+
MZF1_5-13#MA0057.120.006253292.976570.8146518CCCCCTATTATTCCCCCTAC-
TBP#MA0108.220.008270293.936660.81465110CCCCCTATTACCCCGCCTTTTATAC-
AG#MA0005.1-10.008343183.971360.8146519CCCCCTATTAACCAAATTTGG-
TBP#MA0108.220.008568484.078590.81465110CCCCCTATTACCCCGCCTTTTATAC-
YML081W#MA0431.100.01134115.398370.9681189CCCCCTATTAACCCCGCAC+
RDS2#MA0362.1-10.01303346.203910.9681187CCCCCTATTACCCCGAG-
MCM1#MA0331.1-20.01323746.301020.9681188CCCCCTATTACCCAATTAGGAA+
YGR067C#MA0425.120.01493057.106930.99341610CCCCCTATTAACCCCACTTTTTTG+
Klf4#MA0039.100.01597227.602770.99341610CCCCCTATTACCTTCCTTTA-
Dr#MA0188.1-30.01671797.957740.9934167CCCCCTATTACCAATTA+
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