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MacroAPE 1083:VDR f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;41.93236203166138;2.842980012110926;66.65062594100245;3.574032015225163!2;8.447712035986754;2.9242080124569596;102.16597594532787;1.46210400...")
 
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10534-107G3;0.356452!10429-106D6;0.933629!10464-106H5;0.110865!10827-111C8;0.60417!10789-110H6;0.649826!10828-111C9;0.316916!10788-110H5;0.228368!10792-110H9;0.536701!10765-110E9;0.272039!10829-111D1;0.521596!10830-111D2;0.151934!10831-111D3;0.575145!10832-111D4;0.837951!10833-111D5;0.238693!10764-110E8;0.494751!10770-110F5;0.720466!10399-106A3;0.496446!10400-106A4;0.441976!10405-106A9;0.412911!10834-111D6;0.427882!10835-111D7;0.509748!10836-111D8;0.89497!10837-111D9;0.935387!10699-109G6;0.539595!10802-111A1;0.738726!10796-110I4;0.644337!10010-101C1;0.807212!10810-111A9;0.748265!10421-106C7;0.478606!10708-109H6;0.0971529!12235-129G3;0.574751!12236-129G4;0.29857!12237-129G5;0.0302248!10167-103B5;0.617214!10151-102I7;0.00205099!10428-106D5;0.00263451!10795-110I3;0.301882!10805-111A4;0.35457!10052-101G7;0.17092!10189-103D9;0.362254!10589-108D4;0.239884!10425-106D2;0.280874!10427-106D4;0.11125!10702-109G9;0.964967!10432-106D9;0.170825!10496-107C1;0.541062!10718-109I7;0.792567!10011-101C2;0.228062!10053-101G8;0.468248!10686-109F2;0.207593!10084-102B3;0.236936!10012-101C3;0.0226756!10085-102B4;0.00906951!10482-107A5;0.00348691!10419-106C5;0.250431!10080-102A8;0.947726!10760-110E4;0.976936!10709-109H7;0.998536!10710-109H8;0.850102!10703-109H1;0.265365!10719-109I8;0.00714252!10642-109A3;0.01273!10177-103C6;0.00423681!10164-103B2;0.00422152!10173-103C2;0.00386073!10166-103B4;0.000797994!10083-102B2;0.00673647!10188-103D8;0.00947998!10552-107I3;0.00527417!10553-107I4;0.418361!10013-101C4;0.129849!10536-107G5;0.563279!10618-108G6;0.134817!10423-106C9;0.568843!10785-110H2;0.309817!12238-129G6;0.804794!12239-129G7;0.489169!12240-129G8;0.40307!10416-106C2;0.300267!10801-110I9;0.381082!10766-110F1;0.281622!10824-111C5;0.233161!10825-111C6;0.428137!10826-111C7;0.382934!10454-106G4;0.410685!10409-106B4;0.516912!10638-108I8;0.710654!10636-108I6;0.100036!10513-107D9;0.827356!10420-106C6;0.633169!10082-102B1;0.181772!10014-101C5;0.955024!10070-101I7;0.637653!10452-106G2;0.65942!10453-106G3;0.031818!10449-106F8;0.156786!10042-101F6;0.211464!10069-101I6;0.0857333!10193-103E4;0.500657!10631-108I1;0.0397472!10438-106E6;0.855674!10488-107B2;0.579572!10196-103E7;0.351801!10071-101I8;0.318654!10071-101I8;0.610107!10041-101F5;0.000134822!10451-106G1;0.193387!10450-106F9;0.0907273!10604-108F1;0.0281323!10605-108F2;0.611596!10606-108F3;0.567498!10603-108E9;0.454139!10497-107C2;0.507941!10448-106F7;0.964985!10643-109A4;0.831677!10426-106D3;0.869907!10431-106D8;0.452127!10197-103E8;0.332101!10443-106F2;0.536605!10815-111B5;0.356451!10816-111B6;0.664044!10817-111B7;0.992315!10015-101C6;0.508976!10410-106B5;0.691864!10054-101G9;0.243538!10758-110E2;0.380858!10711-109H9;0.62832!10040-101F4;0.452004!10470-106I2;0.00220113!10415-106C1;0.768095!10198-103E9;0.923326!10614-108G2;0.772632!10612-108F9;0.169016!10549-107H9;0.809919!10615-108G3;0.920622!10487-107B1;0.132503!10433-106E1;0.392214!10688-109F4;0.864053!10444-106F3;0.667548!10444-106F3;0.239151!10485-107A8;0.239809!10413-106B8;0.0128145!10175-103C4;0.78466!10161-103A8;0.0314213!12131-128D7;0.0421966!10624-108H3;0.308811!10712-109I1;0.888985!10205-103F7;0.737382!10206-103F8;0.641352!10207-103F9;0.541514!10050-101G5;0.300834!10051-101G6;0.686082!10016-101C7;0.627709!10046-101G1;0.678481!10778-110G4;0.368107!10633-108I3;0.342848!10818-111B8;0.205855!10819-111B9;0.669646!10820-111C1;0.725958!10484-107A7;0.596201!10808-111A7;0.191719!10169-103B7;0.773905!10153-102I9;0.00342739!13425-144D5;0.00874725!13433-144E4;0.0367566!13437-144E8;0.0198627!11904-125F5;0.049488!11905-125F6;0.500239!10039-101F3;0.811709!10791-110H8;0.00239054!10017-101C8;0.77188!10045-101F9;0.11738!10509-107D5;0.766614!10839-111E2;0.614116!10692-109F8;0.440833!10079-102A7;0.247742!10078-102A6;0.80116!10721-110A1;0.587698!10569-108B2;0.875181!10570-108B3;0.426229!10571-108B4;0.339063!10647-109A8;0.887468!10752-110D5;0.531546!10782-110G8;0.473785!10726-110A6;0.0523809!10018-101C9;0.219731!10086-102B5;0.101431!10182-103D2;0.33411!10165-103B3;0.0206967!10499-107C4;0.01654!10408-106B3;0.455359!10019-101D1;0.251168!10068-101I5;0.816984!10075-102A3;0.0579957!10077-102A5;0.502644!10727-110A7;0.61984!10775-110G1;0.31394!10412-106B7;0.553381!12231-129F8;0.331287!12232-129F9;0.705313!12233-129G1;0.991839!12234-129G2;0.998713!10414-106B9;0.632983!10170-103B8;0.0740687!10183-103D3;0.000824802!10150-102I6;0.00424345!10174-103C3;0.00340358!10155-103A2;0.0630521!10038-101F2;0.0393606!10838-111E1;0.0486632!10759-110E3;0.0258926!10514-107E1;0.0310861!10465-106H6;0.942072!10691-109F7;0.374038!10843-111E6;0.563673!10844-111E7;0.377276!11747-123G1;0.016464!11748-123G2;0.0202284!11749-123G3;0.104198!11750-123G4;0.082505!11751-123G5;0.669881!11840-124H4;0.333473!11752-123G6;0.0936374!11753-123G7;0.0925156!11754-123G8;0.136778!11755-123G9;0.201109!11756-123H1;0.168262!11833-124G6;0.648299!11760-123H5;0.0739694!11836-124G9;0.582137!11758-123H3;0.357169!11835-124G8;0.110271!11762-123H7;0.158546!11838-124H2;0.0219647!11757-123H2;0.369148!11759-123H4;0.881775!11761-123H6;0.619634!11842-124H6;0.474192!11837-124H1;0.245869!10568-108B1;0.387569!13230-141I8;0.266357!13231-141I9;0.0482478!10696-109G3;0.0930759!10493-107B7;0.0394204!10494-107B8;0.900255!10850-111F4;0.323942!10851-111F5;0.979214!10852-111F6;0.613719!10853-111F7;0.674983!10854-111F8;0.015149!10855-111F9;0.067379!10856-111G1;0.77225!10847-111F1;0.330931!10846-111E9;0.758964!10848-111F2;0.193176!10845-111E8;0.318775!10857-111G2;0.65467!10858-111G3;0.218978!10156-103A3;0.0593401!11901-125F2;0.00414103!11902-125F3;0.432655!11903-125F4;0.508094!10689-109F5;0.726239!10648-109A9;0.493078!10784-110H1;0.247711!10744-110C6;0.869348!10772-110F7;0.618317!10474-106I6;0.913118!10600-108E6;0.0300641!10684-109E9;0.208031!12226-129F3;0.704278!12227-129F4;0.7913!10508-107D4;0.09591!10539-107G8;0.00413013!10607-108F4;0.0218395!10555-107I6;0.0211264!10774-110F9;0.00087306!10637-108I7;0.239598!10663-109C6;0.00168404!10728-110A8;0.00813402!10729-110A9;0.199256!10430-106D7;0.987982!10730-110B1;0.149207!10813-111B3;0.371756!10812-111B2;0.711141!10037-101F1;0.661311!10172-103C1;0.00289304!10163-103B1;0.000825986!10076-102A4;0.00594022!10073-102A1;0.00548751!10036-101E9;0.00085436!10195-103E6;0.0116477!10277-104E7;0.00474378!10434-106E2;0.301314!10550-107I1;0.451798!10545-107H5;0.629705!10544-107H4;0.750313!10704-109H2;0.712095!10510-107D6;0.185828!10558-107I9;0.0935879!10020-101D2;0.0689057!10732-110B3;0.489335!10049-101G4;0.213447!10698-109G5;0.794469!10437-106E5;0.672256!10417-106C3;0.507853!10035-101E8;0.608026!10171-103B9;0.00529778!10157-103A4;0.0100001!10034-101E7;0.00270666!10072-101I9;0.00510086!10199-103F1;0.000336352!10200-103F2;0.524142!10697-109G4;0.745769!10723-110A3;0.289904!10179-103C8;0.7202!10160-103A7;0.127!10180-103C9;0.0361976!10162-103A9;0.0053575!10021-101D3;0.00343305!10840-111E3;0.989832!10706-109H4;0.39704!10033-101E6;0.893858!10032-101E5;0.0114341!10490-107B4;0.00736207!10439-106E7;0.474038!10022-101D4;0.673169!10176-103C5;0.12575!10469-106I1;0.00259833!10067-101I4;0.88544!10411-106B6;0.0330859!10471-106I3;0.355605!10030-101E3;0.207737!10475-106I7;0.0749728!10787-110H4;0.18543!10477-106I9;0.433093!10695-109G2;0.0205177!11771-123I7;0.266478!11772-123I8;0.830585!11773-123I9;0.174383!10093-102C3;0.3996!10442-106F1;0.952329!10442-106F1;0.341183!10201-103F3;0.787503!10639-108I9;0.472538!11843-124H7;0.744876!11841-124H5;0.0942484!10693-109F9;0.157489!10436-106E4;0.649983!10483-107A6;0.56071!10282-104F3;0.709152!10023-101D5;0.135053!10066-101I3;0.460584!10065-101I2;0.764478!10800-110I8;0.900576!10610-108F7;0.0156097!10841-111E4;0.119881!10541-107H1;0.112071!10842-111E5;0.0114445!10562-108A4;0.0746752!10024-101D6;0.0858022!10064-101I1;0.921918!10609-108F6;0.770578!10048-101G3;0.086413!10781-110G7;0.204848!10181-103D1;0.13789!10159-103A6;0.0460749!10056-101H2;0.0407014!10737-110B8;0.0706909!10025-101D7;0.308664!10044-101F8;0.766657!10424-106D1;0.273004!10463-106H4;0.647665!10616-108G4;0.3392!10486-107A9;0.827681!10062-101H8;0.792967!10202-103F4;0.158562!10158-103A5;0.79427!10441-106E9;0.312831!10031-101E4;0.00449885!10063-101H9;0.0124362!10063-101H9;0.000323614!11763-123H8;0.529784!11765-123I1;0.0564067!11768-123I4;0.0238213!10807-111A6;0.0359808!10790-110H7;0.146545!10798-110I6;0.0212504!10786-110H3;0.781985!10591-108D6;0.0859329!10593-108D8;0.00410892!10590-108D5;0.118372!10026-101D8;0.100147!10096-102C6;0.718802!10168-103B6;0.385371!10154-103A1;0.0430265!10209-103G2;0.0364407!10061-101H7;0.449822!10027-101D9;0.553705!10043-101F7;0.250925!10783-110G9;0.092318!10028-101E1;0.957029!10060-101H6;0.303413!10203-103F5;0.564093!10059-101H5;0.236917!10047-101G2;0.382754!10029-101E2;0.882204!10058-101H4;0.639075!10418-106C4;0.92721!10492-107B6;0.0879748!10694-109G1;0.874226!10797-110I5;0.369391!10057-101H3;0.752129!10100-102D1;0.518667!10055-101H1;0.368866!10204-103F6;0.155826!10191-103E2;0.138853!10563-108A5;0.937081
|name=VDR_f2
|name=VDR_f2
|tomtom_result=RXRA::VDR#MA0074.1;0;6.70506e-16;3.19161e-13;6.36138e-13;15;GGGTCAACGAGTTCAC;GGGTCAACGAGTTCA;+!usp#MA0016.1;1;0.000250344;0.119164;0.118756;9;GGGTCAACGAGTTCAC;GGGGTCACGG;+!RXR::RAR_DR5#MA0159.1;0;0.000405652;0.193091;0.128287;16;GGGTCAACGAGTTCAC;AGGTCATGGAGAGGTCA;+!ESR2#MA0258.1;2;0.000598305;0.284793;0.141909;16;GGGTCAACGAGTTCAC;CAAGGTCACGGTGACCTG;+!RORA_1#MA0071.1;-5;0.00104595;0.497872;0.198468;10;GGGTCAACGAGTTCAC;ATCAAGGTCA;+!ESR1#MA0112.2;2;0.00281905;1.34187;0.40991;16;GGGTCAACGAGTTCAC;CCAGGTCACCGTGACCCC;+!Ar#MA0007.1;4;0.00302439;1.43961;0.40991;16;GGGTCAACGAGTTCAC;GGCGGGTACACGATGTTCTTAT;-!NR4A2#MA0160.1;1;0.00497384;2.36755;0.589862;7;GGGTCAACGAGTTCAC;AAGGTCAC;+!NFE2L1::MafG#MA0089.1;-2;0.00715796;3.40719;0.619511;6;GGGTCAACGAGTTCAC;GTCATG;-!ESR1#MA0112.2;0;0.00722936;3.44117;0.619511;16;GGGTCAACGAGTTCAC;AGGTCAGGGTGACCTGGGCC;-!GAL4#MA0299.1;1;0.00762702;3.63046;0.619511;14;GGGTCAACGAGTTCAC;CGGGGAACAGTACTC;+!CREB1#MA0018.1;1;0.00804545;3.82963;0.619511;11;GGGTCAACGAGTTCAC;GACGTCACCAGG;-!NR3C1#MA0113.1;2;0.00914172;4.35146;0.619511;16;GGGTCAACGAGTTCAC;TCAGGACATAATGTTCCC;-!Pax2#MA0067.1;-1;0.0102351;4.87192;0.627819;8;GGGTCAACGAGTTCAC;AGTCACGG;+!RORA_2#MA0072.1;-2;0.0105878;5.03979;0.627819;14;GGGTCAACGAGTTCAC;TATAAGTAGGTCAA;+!PPARG#MA0066.1;2;0.0114707;5.46006;0.640163;16;GGGTCAACGAGTTCAC;GTAGGTCACGGTGACCTACT;+!Pax4#MA0068.1;4;0.0200645;9.55073;0.933614;16;GGGTCAACGAGTTCAC;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!ct#MA0218.1;-1;0.0209774;9.98526;0.933614;6;GGGTCAACGAGTTCAC;GTTCAA;-
}}
}}

Latest revision as of 13:03, 7 September 2012

Full Name: VDR_f2

Motif matrix
POACGT
141.932362031661382.84298001211092666.650625941002453.574032015225163
28.4477120359867542.9242080124569596102.165975945327871.462104006228474
30.64982400276821234.0614000173013284.6144899195489325.674286060381643
45.5235040235298064.3863120186854338.85385203771688996.23633192006794
53.086664013149004483.2336139136663710.88455204636755417.79517002681706
6100.129037985639983.5740320152251636.2607939776812795.036136021453649
739.3596109717123319.60873098555334318.62151907932653637.410138963407675
823.2639910011245335.4606669551030235.36696305268251520.90837899108982
930.0871430301907635.13767102188617970.007518906313349.767667041609691
1059.571314008823664.30508401833941248.2806219607260162.842980012110926
118.7726240373708663.0054360128029822101.678607943251731.543332006574508
121.4621040062284740.731052003114239341.7511921778576371.05565181279958
1312.7590340053634367.14806403045033615.75823206712917179.33466989705718
146.33578402699006680.8780019036316714.3773560612467313.408858008131615
1571.5243059617640112.67780600501735620.31947598858108610.47841204463742
1617.87327905164450647.9650668858977121.28485506617756327.876798996280215

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RXRA::VDR#MA0074.106.70506e-163.19161e-136.36138e-1315GGGTCAACGAGTTCACGGGTCAACGAGTTCA+
usp#MA0016.110.0002503440.1191640.1187569GGGTCAACGAGTTCACGGGGTCACGG+
RXR::RAR_DR5#MA0159.100.0004056520.1930910.12828716GGGTCAACGAGTTCACAGGTCATGGAGAGGTCA+
ESR2#MA0258.120.0005983050.2847930.14190916GGGTCAACGAGTTCACCAAGGTCACGGTGACCTG+
RORA_1#MA0071.1-50.001045950.4978720.19846810GGGTCAACGAGTTCACATCAAGGTCA+
ESR1#MA0112.220.002819051.341870.4099116GGGTCAACGAGTTCACCCAGGTCACCGTGACCCC+
Ar#MA0007.140.003024391.439610.4099116GGGTCAACGAGTTCACGGCGGGTACACGATGTTCTTAT-
NR4A2#MA0160.110.004973842.367550.5898627GGGTCAACGAGTTCACAAGGTCAC+
NFE2L1::MafG#MA0089.1-20.007157963.407190.6195116GGGTCAACGAGTTCACGTCATG-
ESR1#MA0112.200.007229363.441170.61951116GGGTCAACGAGTTCACAGGTCAGGGTGACCTGGGCC-
GAL4#MA0299.110.007627023.630460.61951114GGGTCAACGAGTTCACCGGGGAACAGTACTC+
CREB1#MA0018.110.008045453.829630.61951111GGGTCAACGAGTTCACGACGTCACCAGG-
NR3C1#MA0113.120.009141724.351460.61951116GGGTCAACGAGTTCACTCAGGACATAATGTTCCC-
Pax2#MA0067.1-10.01023514.871920.6278198GGGTCAACGAGTTCACAGTCACGG+
RORA_2#MA0072.1-20.01058785.039790.62781914GGGTCAACGAGTTCACTATAAGTAGGTCAA+
PPARG#MA0066.120.01147075.460060.64016316GGGTCAACGAGTTCACGTAGGTCACGGTGACCTACT+
Pax4#MA0068.140.02006459.550730.93361416GGGTCAACGAGTTCACGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
ct#MA0218.1-10.02097749.985260.9336146GGGTCAACGAGTTCACGTTCAA-
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