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MacroAPE 1083:Motif684: Difference between revisions

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|name=motif684
|name=motif684
|tomtom_result=ADR1#MA0268.1;1;0.000747076;0.355608;0.319172;6;TGGGGGT;GTGGGGT;-!Macho-1#MA0118.1;0;0.000775307;0.369046;0.319172;7;TGGGGGT;TGGGGGGTC;+!MIG1#MA0337.1;1;0.00101384;0.482588;0.319172;6;TGGGGGT;GCGGGGG;-!RPH1#MA0372.1;1;0.00243374;1.15846;0.396759;7;TGGGGGT;TTAGGGGT;-!MZF1_1-4#MA0056.1;0;0.00303238;1.44341;0.396759;6;TGGGGGT;TGGGGA;+!INSM1#MA0155.1;4;0.00314683;1.49789;0.396759;7;TGGGGGT;TGTCAGGGGGCG;+!YPR022C#MA0436.1;2;0.00332355;1.58201;0.396759;5;TGGGGGT;CGTGGGG;-!RREB1#MA0073.1;4;0.00336078;1.59973;0.396759;7;TGGGGGT;TGGGGGGGGGTGGTTTGGGG;-!MSN2#MA0341.1;-1;0.00390251;1.85759;0.409522;5;TGGGGGT;AGGGG;+!GIS1#MA0306.1;2;0.00640472;3.04865;0.533678;7;TGGGGGT;TTTAGGGGT;-!YER130C#MA0423.1;2;0.00744443;3.54355;0.533678;7;TGGGGGT;AATAGGGGT;-!YML081W#MA0431.1;3;0.00744443;3.54355;0.533678;6;TGGGGGT;GTGCGGGGT;-!RDS2#MA0362.1;1;0.00819912;3.90278;0.533678;6;TGGGGGT;CTCGGGG;+!NFKB1#MA0105.1;-1;0.0090162;4.29171;0.533678;6;TGGGGGT;GGGGATTCCCC;+!YGR067C#MA0425.1;8;0.00923308;4.39495;0.533678;6;TGGGGGT;TGAAAAAGTGGGGT;-!EBF1#MA0154.1;4;0.00949848;4.52128;0.533678;6;TGGGGGT;TCCCTTGGGT;-!opa#MA0456.1;4;0.00960621;4.57256;0.533678;7;TGGGGGT;CAGCGGGGGGTC;-!MIG3#MA0339.1;2;0.0104113;4.9558;0.537127;5;TGGGGGT;TGCGGGG;-!SP1#MA0079.2;-1;0.0114972;5.47265;0.537127;6;TGGGGGT;GGGGGCGGGG;-!MIG2#MA0338.1;2;0.0119338;5.68047;0.537127;5;TGGGGGT;TGCGGGG;-!MSN4#MA0342.1;-1;0.0119432;5.68495;0.537127;5;TGGGGGT;AGGGG;+!TBF1#MA0403.1;1;0.0152815;7.27397;0.628671;7;TGGGGGT;TTAGGGTT;-!Egr1#MA0162.1;4;0.01531;7.28755;0.628671;7;TGGGGGT;TGCGTGGGCGT;+!RGM1#MA0366.1;0;0.0163876;7.80051;0.644884;5;TGGGGGT;AGGGG;+!btd#MA0443.1;0;0.0181505;8.63962;0.685684;7;TGGGGGT;AGGGGGCGGA;+
}}
}}

Latest revision as of 13:18, 7 September 2012

Full Name: motif684

Motif matrix
POACGT
01397729832405140475
02001482761564
03413019761373926342
04709022671342226261
05313401467060
0614146232691024599966
073065928500090681

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

ADR1#MA0268.110.0007470760.3556080.3191726TGGGGGTGTGGGGT-
Macho-1#MA0118.100.0007753070.3690460.3191727TGGGGGTTGGGGGGTC+
MIG1#MA0337.110.001013840.4825880.3191726TGGGGGTGCGGGGG-
RPH1#MA0372.110.002433741.158460.3967597TGGGGGTTTAGGGGT-
MZF1_1-4#MA0056.100.003032381.443410.3967596TGGGGGTTGGGGA+
INSM1#MA0155.140.003146831.497890.3967597TGGGGGTTGTCAGGGGGCG+
YPR022C#MA0436.120.003323551.582010.3967595TGGGGGTCGTGGGG-
RREB1#MA0073.140.003360781.599730.3967597TGGGGGTTGGGGGGGGGTGGTTTGGGG-
MSN2#MA0341.1-10.003902511.857590.4095225TGGGGGTAGGGG+
GIS1#MA0306.120.006404723.048650.5336787TGGGGGTTTTAGGGGT-
YER130C#MA0423.120.007444433.543550.5336787TGGGGGTAATAGGGGT-
YML081W#MA0431.130.007444433.543550.5336786TGGGGGTGTGCGGGGT-
RDS2#MA0362.110.008199123.902780.5336786TGGGGGTCTCGGGG+
NFKB1#MA0105.1-10.00901624.291710.5336786TGGGGGTGGGGATTCCCC+
YGR067C#MA0425.180.009233084.394950.5336786TGGGGGTTGAAAAAGTGGGGT-
EBF1#MA0154.140.009498484.521280.5336786TGGGGGTTCCCTTGGGT-
opa#MA0456.140.009606214.572560.5336787TGGGGGTCAGCGGGGGGTC-
MIG3#MA0339.120.01041134.95580.5371275TGGGGGTTGCGGGG-
SP1#MA0079.2-10.01149725.472650.5371276TGGGGGTGGGGGCGGGG-
MIG2#MA0338.120.01193385.680470.5371275TGGGGGTTGCGGGG-
MSN4#MA0342.1-10.01194325.684950.5371275TGGGGGTAGGGG+
TBF1#MA0403.110.01528157.273970.6286717TGGGGGTTTAGGGTT-
Egr1#MA0162.140.015317.287550.6286717TGGGGGTTGCGTGGGCGT+
RGM1#MA0366.100.01638767.800510.6448845TGGGGGTAGGGG+
btd#MA0443.100.01815058.639620.6856847TGGGGGTAGGGGGCGGA+