MacroAPE 1083:GAAAAGC,motif664: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Macroape_1083
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11C9;0.500157!10788-110H5;0.283609!10792-110H9;0.733216!10765-110E9;0.170872!10829-111D1;0.393476!10830-111D2;0.0460195!10831-111D3;0.754586!10832-111D4;0.593234!10833-111D5;0.00917229!10764-110E8;0.0090822!10770-110F5;0.364879!10399-106A3;0.334944!10400-106A4;0.44655!10405-106A9;0.462827!10834-111D6;0.472831!10835-111D7;0.130308!10836-111D8;0.102025!10837-111D9;0.254576!10699-109G6;0.258535!10802-111A1;0.0602905!10796-110I4;0.142859!10010-101C1;0.624698!10810-111A9;0.918634!10421-106C7;0.865467!10708-109H6;0.42294!12235-129G3;0.676185!12236-129G4;0.744064!12237-129G5;0.221222!10167-103B5;0.818937!10151-102I7;0.283645!10428-106D5;0.35071!10795-110I3;0.845825!10805-111A4;0.37467!10052-101G7;0.765027!10189-103D9;0.426085!10589-108D4;0.502142!10425-106D2;0.731891!10427-106D4;0.926438!10702-109G9;0.0897698!10432-106D9;0.677889!10496-107C1;0.981146!10718-109I7;0.223324!10011-101C2;0.419974!10053-101G8;0.820019!10686-109F2;0.33827!10084-102B3;0.39018!10012-101C3;0.243681!10085-102B4;0.31052!10482-107A5;0.558065!10419-106C5;0.660068!10080-102A8;0.456664!10760-110E4;0.230274!10709-109H7;0.242429!10710-109H8;0.453459!10703-109H1;0.768574!10719-109I8;0.987292!10642-109A3;0.924397!10177-103C6;0.424204!10164-103B2;0.443664!10173-103C2;0.585871!10166-103B4;0.140677!10083-102B2;0.177774!10188-103D8;0.202645!10552-107I3;0.187659!10553-107I4;0.859297!10013-101C4;0.39537!10536-107G5;0.627021!10618-108G6;0.950116!10423-106C9;0.940508!10785-110H2;0.78598!12238-129G6;0.853713!12239-129G7;0.707254!12240-129G8;0.138737!10416-106C2;0.684512!10801-110I9;0.0245856!10766-110F1;0.29118!10824-111C5;0.213993!10825-111C6;0.856731!10826-111C7;0.939181!10454-106G4;0.985652!10409-106B4;0.999679!10638-108I8;0.0616074!10636-108I6;0.419071!10513-107D9;0.45934!10420-106C6;0.353311!10082-102B1;0.766393!10014-101C5;0.649223!10070-101I7;0.794604!10452-106G2;0.780092!10453-106G3;0.0381565!10449-106F8;0.220125!10042-101F6;0.175016!10069-101I6;0.4153!10193-103E4;0.987065!10631-108I1;0.633929!10438-106E6;0.209413!10488-107B2;0.81549!10196-103E7;0.831404!10071-101I8;0.239956!10071-101I8;0.403235!10041-101F5;0.475727!10451-106G1;0.529632!10450-106F9;0.146486!10604-108F1;0.239853!10605-108F2;0.732682!10606-108F3;0.130586!10603-108E9;0.376867!10497-107C2;0.143303!10448-106F7;0.770556!10643-109A4;0.76279!10426-106D3;0.338015!10431-106D8;0.832341!10197-103E8;0.644522!10443-106F2;0.551161!10815-111B5;0.138832!10816-111B6;0.798568!10817-111B7;0.625098!10015-101C6;0.927793!10410-106B5;0.606566!10054-101G9;0.995361!10758-110E2;0.270649!10711-109H9;0.286383!10040-101F4;0.861188!10470-106I2;0.334858!10415-106C1;0.679966!10198-103E9;0.818606!10614-108G2;0.605968!10612-108F9;0.534801!10549-107H9;0.694297!10615-108G3;0.828468!10487-107B1;0.452168!10433-106E1;0.513402!10688-109F4;0.0651513!10444-106F3;0.782666!10444-106F3;0.837063!10485-107A8;0.857547!10413-106B8;0.696443!10175-103C4;0.228191!10161-103A8;0.295018!12131-128D7;0.394859!10624-108H3;0.641353!10712-109I1;0.987364!10205-103F7;0.681039!10206-103F8;0.609032!10207-103F9;0.951724!10050-101G5;0.798371!10051-101G6;0.863359!10016-101C7;0.748459!10046-101G1;0.950414!10778-110G4;0.850899!10633-108I3;0.528917!10818-111B8;0.175175!10819-111B9;0.668001!10820-111C1;0.720406!10484-107A7;0.803512!10808-111A7;0.265846!10169-103B7;0.23408!10153-102I9;0.296946!13425-144D5;0.351533!13433-144E4;0.947746!13437-144E8;0.951093!11904-125F5;0.960495!11905-125F6;0.915479!10039-101F3;0.639643!10791-110H8;0.374489!10017-101C8;0.557513!10045-101F9;0.256402!10509-107D5;0.50243!10839-111E2;0.639088!10692-109F8;0.457217!10079-102A7;0.00613888!10078-102A6;0.742607!10721-110A1;0.674095!10569-108B2;0.728747!10570-108B3;0.167031!10571-108B4;0.0348139!10647-109A8;0.435129!10752-110D5;0.213327!10782-110G8;0.545462!10726-110A6;0.311511!10018-101C9;0.422225!10086-102B5;0.5722!10182-103D2;0.778172!10165-103B3;0.256912!10499-107C4;0.404272!10408-106B3;0.0799799!10019-101D1;0.562735!10068-101I5;0.571387!10075-102A3;0.801254!10077-102A5;0.488986!10727-110A7;0.625346!10775-110G1;0.783684!10412-106B7;0.178237!12231-129F8;0.0562083!12232-129F9;0.525963!12233-129G1;0.594182!12234-129G2;0.498223!10414-106B9;0.510145!10170-103B8;0.612774!10183-103D3;0.322853!10150-102I6;0.360144!10174-103C3;0.344375!10155-103A2;0.145289!10038-101F2;0.259909!10838-111E1;0.314065!10759-110E3;0.877437!10514-107E1;0.262314!10465-106H6;0.976053!10691-109F7;0.636838!10843-111E6;0.9345!10844-111E7;0.84755!11747-123G1;0.797747!11748-123G2;0.3396!11749-123G3;0.700835!11750-123G4;0.583498!11751-123G5;0.991663!11840-124H4;0.89559!11752-123G6;0.910282!11753-123G7;0.861195!11754-123G8;0.915216!11755-123G9;0.585595!11756-123H1;0.524402!11833-124G6;0.594865!11760-123H5;0.953022!11836-124G9;0.885311!11758-123H3;0.475011!11835-124G8;0.318786!11762-123H7;0.562661!11838-124H2;0.804201!11757-123H2;0.467346!11759-123H4;0.996783!11761-123H6;0.768839!11842-124H6;0.753995!11837-124H1;0.804355!10568-108B1;0.840072!13230-141I8;0.397395!13231-141I9;0.722485!10696-109G3;0.977672!10493-107B7;0.033557!10494-107B8;0.794554!10850-111F4;0.702237!10851-111F5;0.447758!10852-111F6;0.638952!10853-111F7;0.429394!10854-111F8;0.949663!10855-111F9;0.797818!10856-111G1;0.320768!10847-111F1;0.667452!10846-111E9;0.677895!10848-111F2;0.726836!10845-111E8;0.468898!10857-111G2;0.726061!10858-111G3;0.328107!10156-103A3;0.456313!11901-125F2;0.34356!11902-125F3;0.498868!11903-125F4;0.411621!10689-109F5;0.344964!10648-109A9;0.940791!10784-110H1;0.939661!10744-110C6;0.63476!10772-110F7;0.335043!10474-106I6;0.192641!10600-108E6;0.390246!10684-109E9;0.336858!12226-129F3;0.25938!12227-129F4;0.739327!10508-107D4;0.958765!10539-107G8;0.428178!10607-108F4;0.232343!10555-107I6;0.721375!10774-110F9;0.330921!10637-108I7;0.681092!10663-109C6;0.631399!10728-110A8;0.642405!10729-110A9;0.874135!10430-106D7;0.484812!10730-110B1;0.991577!10813-111B3;0.431291!10812-111B2;0.699764!10037-101F1;0.501145!10172-103C1;0.422145!10163-103B1;0.26307!10076-102A4;0.283035!10073-102A1;0.391299!10036-101E9;0.391316!10195-103E6;0.318893!10277-104E7;0.421186!10434-106E2;0.596916!10550-107I1;0.394465!10545-107H5;0.458415!10544-107H4;0.934369!10704-109H2;0.981112!10510-107D6;0.263022!10558-107I9;0.0244234!10020-101D2;0.814804!10732-110B3;0.853498!10049-101G4;0.326151!10698-109G5;0.27118!10437-106E5;0.563511!10417-106C3;0.626637!10035-101E8;0.739724!10171-103B9;0.337869!10157-103A4;0.29684!10034-101E7;0.338763!10072-101I9;0.355305!10199-103F1;0.445645!10200-103F2;0.709831!10697-109G4;0.911386!10723-110A3;0.535059!10179-103C8;0.198859!10160-103A7;0.0745709!10180-103C9;0.0494582!10162-103A9;0.214704!10021-101D3;0.0841433!10840-111E3;0.809024!10706-109H4;0.276896!10033-101E6;0.302545!10032-101E5;0.213218!10490-107B4;0.405155!10439-106E7;0.940864!10022-101D4;0.359958!10176-103C5;0.903602!10469-106I1;0.526693!10067-101I4;0.395532!10411-106B6;0.193184!10471-106I3;0.146227!10030-101E3;0.631433!10475-106I7;0.0243583!10787-110H4;0.479383!10477-106I9;0.450366!10695-109G2;0.28715!11771-123I7;0.393899!11772-123I8;0.623823!11773-123I9;0.211638!10093-102C3;0.998928!10442-106F1;0.768246!10442-106F1;0.967606!10201-103F3;0.712514!10639-108I9;0.57081!11843-124H7;0.973188!11841-124H5;0.720839!10693-109F9;0.476932!10436-106E4;0.126814!10483-107A6;0.218049!10282-104F3;0.747992!10023-101D5;0.75845!10066-101I3;0.99593!10065-101I2;0.438773!10800-110I8;0.958037!10610-108F7;0.313976!10841-111E4;0.311289!10541-107H1;0.505979!10842-111E5;0.245026!10562-108A4;0.869958!10024-101D6;0.617571!10064-101I1;0.457731!10609-108F6;0.436109!10048-101G3;0.950126!10781-110G7;0.798503!10181-103D1;0.747364!10159-103A6;0.246252!10056-101H2;0.253978!10737-110B8;0.283494!10025-101D7;0.63401!10044-101F8;0.732252!10424-106D1;0.743927!10463-106H4;0.409491!10616-108G4;0.75887!10486-107A9;0.827007!10062-101H8;0.604491!10202-103F4;0.940751!10158-103A5;0.822315!10441-106E9;0.63019!10031-101E4;0.381741!10063-101H9;0.375002!10063-101H9;0.528859!11763-123H8;0.476736!11765-123I1;0.799342!11768-123I4;0.726154!10807-111A6;0.573557!10790-110H7;0.512693!10798-110I6;0.395732!10786-110H3;0.130299!10591-108D6;0.801668!10593-108D8;0.869086!10590-108D5;0.135201!10026-101D8;0.583462!10096-102C6;0.617784!10168-103B6;0.113104!10154-103A1;0.384863!10209-103G2;0.483514!10061-101H7;0.885343!10027-101D9;0.96178!10043-101F7;0.188337!10783-110G9;0.623945!10028-101E1;0.939537!10060-101H6;0.703527!10203-103F5;0.710433!10059-101H5;0.716391!10047-101G2;0.926088!10029-101E2;0.340844!10058-101H4;0.812301!10418-106C4;0.824563!10492-107B6;0.415195!10694-109G1;0.385345!10797-110I5;0.229994!10057-101H3;0.741546!10100-102D1;0.835718!10055-101H1;0.594377!10204-103F6;0.621777!10191-103E2;0.574501!10563-108A5;0.604743 | ||
|name=GAAAAGC,motif664,CNhs12840,T:2007.0(56.01%),B:30961.9(46.51%),P:1e-29 | |name=GAAAAGC,motif664,CNhs12840,T:2007.0(56.01%),B:30961.9(46.51%),P:1e-29 | ||
|tomtom_result=MNB1A#MA0053.1;-2;0.000598577;0.284922;0.569845;5;GAAAAGC;AAAGC;+!PBF#MA0064.1;-2;0.00168291;0.801067;0.801067;5;GAAAAGC;AAAGC;+!dl_1#MA0022.1;2;0.00365232;1.7385;0.921084;7;GAAAAGC;CGGAAAAACCCC;-!Dof2#MA0020.1;-2;0.0038701;1.84217;0.921084;5;GAAAAGC;AAAGCA;+!DAL81#MA0290.1;-1;0.00507727;2.41678;0.966711;6;GAAAAGC;AAAAGCCGCGGGCGGGATT;+!AZF1#MA0277.1;0;0.00747692;3.55902;1;7;GAAAAGC;AAAAAGAAA;+!NFATC2#MA0152.1;2;0.00927086;4.41293;1;5;GAAAAGC;TGGAAAA;-!Dof3#MA0021.1;-2;0.0113269;5.3916;1;5;GAAAAGC;AAAGCG;+!CUP2#MA0287.1;5;0.0183986;8.75774;1;6;GAAAAGC;CAGCAAAAATG;+!dl_2#MA0023.1;1;0.0185121;8.81176;1;7;GAAAAGC;GGAAAACCCC;-!DAL80#MA0289.1;1;0.0205075;9.76155;1;6;GAAAAGC;CGATAAG;+!REL#MA0101.1;0;0.020837;9.91839;1;7;GAAAAGC;GGAAATCCCC;- | |||
}} | }} |
Latest revision as of 13:18, 7 September 2012
Full Name: GAAAAGC,motif664,CNhs12840,T:2007.0(56.01%),B:30961.9(46.51%),P:1e-29
Motif matrix | ||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
MNB1A#MA0053.1 | -2 | 0.000598577 | 0.284922 | 0.569845 | 5 | GAAAAGC | AAAGC | + |
PBF#MA0064.1 | -2 | 0.00168291 | 0.801067 | 0.801067 | 5 | GAAAAGC | AAAGC | + |
dl_1#MA0022.1 | 2 | 0.00365232 | 1.7385 | 0.921084 | 7 | GAAAAGC | CGGAAAAACCCC | - |
Dof2#MA0020.1 | -2 | 0.0038701 | 1.84217 | 0.921084 | 5 | GAAAAGC | AAAGCA | + |
DAL81#MA0290.1 | -1 | 0.00507727 | 2.41678 | 0.966711 | 6 | GAAAAGC | AAAAGCCGCGGGCGGGATT | + |
AZF1#MA0277.1 | 0 | 0.00747692 | 3.55902 | 1 | 7 | GAAAAGC | AAAAAGAAA | + |
NFATC2#MA0152.1 | 2 | 0.00927086 | 4.41293 | 1 | 5 | GAAAAGC | TGGAAAA | - |
Dof3#MA0021.1 | -2 | 0.0113269 | 5.3916 | 1 | 5 | GAAAAGC | AAAGCG | + |
CUP2#MA0287.1 | 5 | 0.0183986 | 8.75774 | 1 | 6 | GAAAAGC | CAGCAAAAATG | + |
dl_2#MA0023.1 | 1 | 0.0185121 | 8.81176 | 1 | 7 | GAAAAGC | GGAAAACCCC | - |
DAL80#MA0289.1 | 1 | 0.0205075 | 9.76155 | 1 | 6 | GAAAAGC | CGATAAG | + |
REL#MA0101.1 | 0 | 0.020837 | 9.91839 | 1 | 7 | GAAAAGC | GGAAATCCCC | - |