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MacroAPE 1083:Motif TTGACN: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;0;1008!02;0;0;0;1008!03;0;0;1008;0!04;1008;0;0;0!05;0;1008;0;0!06;252;252;252;252 |macroape_1083_sample_pvalues=11376-118A8;0.341589!1...")
 
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9-110H6;0.856678!10828-111C9;0.82421!10788-110H5;0.766497!10792-110H9;0.993133!10765-110E9;0.978042!10829-111D1;0.456357!10830-111D2;0.972757!10831-111D3;0.280642!10832-111D4;0.873816!10833-111D5;0.879256!10764-110E8;0.926375!10770-110F5;0.697112!10399-106A3;0.816959!10400-106A4;0.996541!10405-106A9;0.935877!10834-111D6;0.898226!10835-111D7;0.670103!10836-111D8;0.591568!10837-111D9;0.41336!10699-109G6;0.770751!10802-111A1;0.924087!10796-110I4;0.847576!10010-101C1;0.98137!10810-111A9;0.36825!10421-106C7;0.918851!10708-109H6;0.80436!12235-129G3;0.603745!12236-129G4;0.402105!12237-129G5;0.335085!10167-103B5;0.505587!10151-102I7;0.462676!10428-106D5;0.615076!10795-110I3;0.345294!10805-111A4;0.452631!10052-101G7;0.7611!10189-103D9;0.884976!10589-108D4;0.72097!10425-106D2;0.0722877!10427-106D4;0.839393!10702-109G9;0.806329!10432-106D9;0.281704!10496-107C1;0.351533!10718-109I7;0.874339!10011-101C2;0.767747!10053-101G8;0.476081!10686-109F2;0.327165!10084-102B3;0.66516!10012-101C3;0.277342!10085-102B4;0.5195!10482-107A5;0.709246!10419-106C5;0.498259!10080-102A8;0.487431!10760-110E4;0.65789!10709-109H7;0.158298!10710-109H8;0.691503!10703-109H1;0.539297!10719-109I8;0.838408!10642-109A3;0.550899!10177-103C6;0.745619!10164-103B2;0.50691!10173-103C2;0.575676!10166-103B4;0.425056!10083-102B2;0.40018!10188-103D8;0.383143!10552-107I3;0.429334!10553-107I4;0.487687!10013-101C4;0.667142!10536-107G5;0.793879!10618-108G6;0.620416!10423-106C9;0.53475!10785-110H2;0.762529!12238-129G6;0.976712!12239-129G7;0.494407!12240-129G8;0.298093!10416-106C2;0.562305!10801-110I9;0.981764!10766-110F1;0.829089!10824-111C5;0.676737!10825-111C6;0.768851!10826-111C7;0.857252!10454-106G4;0.746845!10409-106B4;0.883495!10638-108I8;0.981705!10636-108I6;0.221135!10513-107D9;0.301618!10420-106C6;0.438973!10082-102B1;0.595655!10014-101C5;0.785298!10070-101I7;0.215267!10452-106G2;0.507744!10453-106G3;0.175623!10449-106F8;0.393431!10042-101F6;0.437466!10069-101I6;0.330844!10193-103E4;0.510944!10631-108I1;0.434701!10438-106E6;0.922869!10488-107B2;0.439217!10196-103E7;0.843563!10071-101I8;0.202154!10071-101I8;0.3622!10041-101F5;0.465427!10451-106G1;0.598445!10450-106F9;0.335651!10604-108F1;0.399457!10605-108F2;0.115258!10606-108F3;0.364689!10603-108E9;0.329048!10497-107C2;0.123644!10448-106F7;0.456878!10643-109A4;0.292927!10426-106D3;0.550154!10431-106D8;0.179926!10197-103E8;0.365016!10443-106F2;0.421394!10815-111B5;0.383823!10816-111B6;0.579693!10817-111B7;0.427162!10015-101C6;0.66086!10410-106B5;0.78726!10054-101G9;0.745417!10758-110E2;0.578939!10711-109H9;0.309577!10040-101F4;0.0267832!10470-106I2;0.476222!10415-106C1;0.233203!10198-103E9;0.0413933!10614-108G2;0.465172!10612-108F9;0.20733!10549-107H9;0.96254!10615-108G3;0.899555!10487-107B1;0.103235!10433-106E1;0.890843!10688-109F4;0.738913!10444-106F3;0.772141!10444-106F3;0.0615478!10485-107A8;0.129893!10413-106B8;0.0893546!10175-103C4;0.942444!10161-103A8;0.462739!12131-128D7;0.430491!10624-108H3;0.438042!10712-109I1;0.239723!10205-103F7;0.306706!10206-103F8;0.805804!10207-103F9;0.588776!10050-101G5;0.953811!10051-101G6;0.553508!10016-101C7;0.209069!10046-101G1;0.263011!10778-110G4;0.616548!10633-108I3;0.237644!10818-111B8;0.877208!10819-111B9;0.819735!10820-111C1;0.791951!10484-107A7;0.871794!10808-111A7;0.439024!10169-103B7;0.561685!10153-102I9;0.598865!13425-144D5;0.51216!13433-144E4;0.0435344!13437-144E8;0.0566394!11904-125F5;0.0660693!11905-125F6;0.115905!10039-101F3;0.289822!10791-110H8;0.600314!10017-101C8;0.87297!10045-101F9;0.101532!10509-107D5;0.384312!10839-111E2;0.206821!10692-109F8;0.834515!10079-102A7;0.346463!10078-102A6;0.639394!10721-110A1;0.268652!10569-108B2;0.93328!10570-108B3;0.448384!10571-108B4;0.366225!10647-109A8;0.2511!10752-110D5;0.167599!10782-110G8;0.58431!10726-110A6;0.501383!10018-101C9;0.297286!10086-102B5;0.0166575!10182-103D2;0.0297135!10165-103B3;0.527036!10499-107C4;0.37346!10408-106B3;0.662756!10019-101D1;0.29063!10068-101I5;0.584526!10075-102A3;0.557765!10077-102A5;0.254279!10727-110A7;0.357846!10775-110G1;0.854747!10412-106B7;0.905841!12231-129F8;0.0771548!12232-129F9;0.321786!12233-129G1;0.519915!12234-129G2;0.726347!10414-106B9;0.356029!10170-103B8;0.766614!10183-103D3;0.453253!10150-102I6;0.521244!10174-103C3;0.58052!10155-103A2;0.326328!10038-101F2;0.338512!10838-111E1;0.440157!10759-110E3;0.214203!10514-107E1;0.0778655!10465-106H6;0.356034!10691-109F7;0.163333!10843-111E6;0.779861!10844-111E7;0.715795!11747-123G1;0.416245!11748-123G2;0.145181!11749-123G3;0.101881!11750-123G4;0.0258628!11751-123G5;0.439029!11840-124H4;0.192816!11752-123G6;0.198448!11753-123G7;0.0159988!11754-123G8;0.068833!11755-123G9;0.14979!11756-123H1;0.0386766!11833-124G6;0.239325!11760-123H5;0.0241769!11836-124G9;0.227774!11758-123H3;0.257477!11835-124G8;0.181203!11762-123H7;0.223938!11838-124H2;0.249712!11757-123H2;0.18416!11759-123H4;0.206786!11761-123H6;0.714979!11842-124H6;0.186301!11837-124H1;0.148186!10568-108B1;0.465549!13230-141I8;0.0741685!13231-141I9;0.281197!10696-109G3;0.31627!10493-107B7;0.404717!10494-107B8;0.269848!10850-111F4;0.696926!10851-111F5;0.4981!10852-111F6;0.0863271!10853-111F7;0.224704!10854-111F8;0.406915!10855-111F9;0.285767!10856-111G1;0.45061!10847-111F1;0.47514!10846-111E9;0.148046!10848-111F2;0.543645!10845-111E8;0.164655!10857-111G2;0.444091!10858-111G3;0.894589!10156-103A3;0.126073!11901-125F2;0.568738!11902-125F3;0.0310641!11903-125F4;0.0647005!10689-109F5;0.0959176!10648-109A9;0.910562!10784-110H1;0.75231!10744-110C6;0.124234!10772-110F7;0.841532!10474-106I6;0.738267!10600-108E6;0.755378!10684-109E9;0.685944!12226-129F3;0.0704538!12227-129F4;0.613225!10508-107D4;0.760451!10539-107G8;0.951768!10607-108F4;0.53798!10555-107I6;0.1595!10774-110F9;0.805861!10637-108I7;0.653385!10663-109C6;0.367172!10728-110A8;0.848725!10729-110A9;0.396344!10430-106D7;0.372003!10730-110B1;0.349813!10813-111B3;0.372237!10812-111B2;0.797119!10037-101F1;0.280552!10172-103C1;0.519818!10163-103B1;0.483099!10076-102A4;0.443712!10073-102A1;0.33647!10036-101E9;0.578376!10195-103E6;0.491007!10277-104E7;0.470861!10434-106E2;0.0656577!10550-107I1;0.325199!10545-107H5;0.67512!10544-107H4;0.183327!10704-109H2;0.436175!10510-107D6;0.198533!10558-107I9;0.21706!10020-101D2;0.226228!10732-110B3;0.213628!10049-101G4;0.4386!10698-109G5;0.000737679!10437-106E5;0.980999!10417-106C3;0.158219!10035-101E8;0.72821!10171-103B9;0.511617!10157-103A4;0.380708!10034-101E7;0.552368!10072-101I9;0.492177!10199-103F1;0.49961!10200-103F2;0.572479!10697-109G4;0.594121!10723-110A3;0.861474!10179-103C8;0.315143!10160-103A7;0.175006!10180-103C9;0.241789!10162-103A9;0.0128372!10021-101D3;0.0860987!10840-111E3;0.465797!10706-109H4;0.878452!10033-101E6;0.0780015!10032-101E5;0.476324!10490-107B4;0.51944!10439-106E7;0.533833!10022-101D4;0.668568!10176-103C5;0.510118!10469-106I1;0.515056!10067-101I4;0.915197!10411-106B6;0.968321!10471-106I3;0.0349964!10030-101E3;0.61435!10475-106I7;0.431077!10787-110H4;0.590571!10477-106I9;0.341702!10695-109G2;0.594776!11771-123I7;0.383836!11772-123I8;0.0985966!11773-123I9;0.40493!10093-102C3;0.395997!10442-106F1;0.81995!10442-106F1;0.155229!10201-103F3;0.114052!10639-108I9;0.0996239!11843-124H7;0.65863!11841-124H5;0.0497758!10693-109F9;0.0822955!10436-106E4;0.78539!10483-107A6;0.964069!10282-104F3;0.785083!10023-101D5;0.013245!10066-101I3;0.0783144!10065-101I2;0.728305!10800-110I8;0.802388!10610-108F7;0.27231!10841-111E4;0.749725!10541-107H1;0.132119!10842-111E5;0.707677!10562-108A4;0.679505!10024-101D6;0.051512!10064-101I1;0.0806498!10609-108F6;0.796335!10048-101G3;0.00118915!10781-110G7;0.344432!10181-103D1;0.045261!10159-103A6;0.445106!10056-101H2;0.379199!10737-110B8;0.648411!10025-101D7;0.113968!10044-101F8;0.430646!10424-106D1;0.478789!10463-106H4;0.693092!10616-108G4;0.480039!10486-107A9;0.335127!10062-101H8;0.887519!10202-103F4;0.472544!10158-103A5;0.637749!10441-106E9;0.204808!10031-101E4;0.233976!10063-101H9;0.528695!10063-101H9;0.605715!11763-123H8;0.36876!11765-123I1;0.145898!11768-123I4;0.152309!10807-111A6;0.22112!10790-110H7;0.282002!10798-110I6;0.746462!10786-110H3;0.750756!10591-108D6;0.221996!10593-108D8;0.323769!10590-108D5;0.523203!10026-101D8;0.959353!10096-102C6;0.304894!10168-103B6;0.194602!10154-103A1;0.252314!10209-103G2;0.422218!10061-101H7;0.513429!10027-101D9;0.848051!10043-101F7;0.557381!10783-110G9;0.374186!10028-101E1;0.00402345!10060-101H6;0.398312!10203-103F5;0.503155!10059-101H5;0.699465!10047-101G2;0.711184!10029-101E2;0.731878!10058-101H4;0.883949!10418-106C4;0.920859!10492-107B6;0.258044!10694-109G1;0.439303!10797-110I5;0.913537!10057-101H3;0.667466!10100-102D1;0.89235!10055-101H1;0.688591!10204-103F6;0.636122!10191-103E2;0.475888!10563-108A5;0.700385
|name=motif_TTGACN
|name=motif_TTGACN
|tomtom_result=exd#MA0222.1;2;0.000673154;0.320421;0.574397;6;TTGACA;TTTTGACA;+!TOS8#MA0408.1;1;0.00120672;0.574397;0.574397;6;TTGACA;TTTGACAG;-!tll#MA0459.1;1;0.00190221;0.905453;0.603635;6;TTGACA;TTTGACTTTT;-!NR1H2::RXRA#MA0115.1;8;0.00531824;2.53148;1;6;TTGACA;GTTGACCTTTGACCTTT;-!PPARG::RXRA#MA0065.1;9;0.0065873;3.13556;1;6;TTGACA;AGATGACCTTTGACCCCTGA;-!Esrrb#MA0141.1;5;0.00732551;3.48694;1;6;TTGACA;TGACCTTGAGCT;-!ceh-22#MA0264.1;5;0.00943724;4.49213;1;6;TTGACA;ACCACTTGAAA;+!RORA_2#MA0072.1;0;0.012558;5.97762;1;6;TTGACA;TTGACCTACTTATA;-!NFIC#MA0161.1;0;0.012646;6.01951;1;6;TTGACA;TTGGCA;+!Pax2#MA0067.1;2;0.0129707;6.17406;1;6;TTGACA;GCGTGACT;-!hth#MA0227.1;-1;0.0141731;6.74641;1;5;TTGACA;TGACAG;+!BAS1#MA0278.1;5;0.0166266;7.91428;1;6;TTGACA;TTGACTTGACTCTGGCTGTGC;-!RIM101#MA0368.1;1;0.0167629;7.97916;1;6;TTGACA;CTTGGCG;-!ARG81#MA0272.1;0;0.01789;8.51565;1;6;TTGACA;GTGACTCT;+!achi#MA0207.1;-1;0.0207283;9.86669;1;5;TTGACA;TGACAG;+!vis#MA0252.1;-1;0.0207283;9.86669;1;5;TTGACA;TGACAG;+
}}
}}

Latest revision as of 13:19, 7 September 2012

Full Name: motif_TTGACN

Motif matrix
POACGT
010001008
020001008
030010080
041008000
050100800
06252252252252

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
exd#MA0222.120.0006731540.3204210.5743976TTGACATTTTGACA+
TOS8#MA0408.110.001206720.5743970.5743976TTGACATTTGACAG-
tll#MA0459.110.001902210.9054530.6036356TTGACATTTGACTTTT-
NR1H2::RXRA#MA0115.180.005318242.5314816TTGACAGTTGACCTTTGACCTTT-
PPARG::RXRA#MA0065.190.00658733.1355616TTGACAAGATGACCTTTGACCCCTGA-
Esrrb#MA0141.150.007325513.4869416TTGACATGACCTTGAGCT-
ceh-22#MA0264.150.009437244.4921316TTGACAACCACTTGAAA+
RORA_2#MA0072.100.0125585.9776216TTGACATTGACCTACTTATA-
NFIC#MA0161.100.0126466.0195116TTGACATTGGCA+
Pax2#MA0067.120.01297076.1740616TTGACAGCGTGACT-
hth#MA0227.1-10.01417316.7464115TTGACATGACAG+
BAS1#MA0278.150.01662667.9142816TTGACATTGACTTGACTCTGGCTGTGC-
RIM101#MA0368.110.01676297.9791616TTGACACTTGGCG-
ARG81#MA0272.100.017898.5156516TTGACAGTGACTCT+
achi#MA0207.1-10.02072839.8666915TTGACATGACAG+
vis#MA0252.1-10.02072839.8666915TTGACATGACAG+
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