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MacroAPE 1083:2-TATATAGCCG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;70.788;10.757;10.41;255.045!2;281.764;9.716;0.347;55.173!3;97.16;0.347;8.328;241.165!4;305.36;9.022;24.984;7.634!5;91.608;19.779;17.003;218....")
 
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-106D6;0.0560804!10464-106H5;0.393067!10827-111C8;0.133251!10789-110H6;0.207775!10828-111C9;0.126091!10788-110H5;0.240059!10792-110H9;0.0957099!10765-110E9;0.0848175!10829-111D1;0.00750865!10830-111D2;0.0819425!10831-111D3;0.0416691!10832-111D4;0.317583!10833-111D5;0.0599607!10764-110E8;0.1787!10770-110F5;0.612809!10399-106A3;0.0672686!10400-106A4;0.00646045!10405-106A9;0.00238431!10834-111D6;0.0277723!10835-111D7;0.130154!10836-111D8;0.794468!10837-111D9;0.517552!10699-109G6;0.552026!10802-111A1;0.0798842!10796-110I4;0.390385!10010-101C1;0.150957!10810-111A9;0.0326735!10421-106C7;0.547754!10708-109H6;0.00373483!12235-129G3;0.835564!12236-129G4;0.000858958!12237-129G5;0.957671!10167-103B5;0.0928096!10151-102I7;0.619189!10428-106D5;0.276864!10795-110I3;0.469913!10805-111A4;0.0057059!10052-101G7;0.0546933!10189-103D9;0.0451695!10589-108D4;0.146523!10425-106D2;0.91321!10427-106D4;0.196999!10702-109G9;0.862992!10432-106D9;0.284899!10496-107C1;0.595752!10718-109I7;0.00476719!10011-101C2;0.0989711!10053-101G8;0.0419784!10686-109F2;0.748658!10084-102B3;0.405812!10012-101C3;0.604722!10085-102B4;0.210156!10482-107A5;0.735604!10419-106C5;0.430258!10080-102A8;0.018079!10760-110E4;0.00156314!10709-109H7;0.529938!10710-109H8;0.420949!10703-109H1;0.234088!10719-109I8;0.725736!10642-109A3;0.0265202!10177-103C6;0.214501!10164-103B2;0.359385!10173-103C2;0.104447!10166-103B4;0.35304!10083-102B2;0.205221!10188-103D8;0.536686!10552-107I3;0.934521!10553-107I4;0.429044!10013-101C4;0.0164016!10536-107G5;0.194117!10618-108G6;0.916207!10423-106C9;0.107954!10785-110H2;0.446692!12238-129G6;0.731798!12239-129G7;3.26441e-06!12240-129G8;0.823679!10416-106C2;0.0339545!10801-110I9;0.00770069!10766-110F1;0.706694!10824-111C5;0.663802!10825-111C6;0.0545693!10826-111C7;0.0374087!10454-106G4;0.0174444!10409-106B4;0.267955!10638-108I8;0.449725!10636-108I6;0.586907!10513-107D9;0.604139!10420-106C6;0.0187783!10082-102B1;0.771064!10014-101C5;0.152338!10070-101I7;0.102668!10452-106G2;0.045868!10453-106G3;0.294597!10449-106F8;0.645443!10042-101F6;0.375126!10069-101I6;0.346444!10193-103E4;0.0222456!10631-108I1;0.345957!10438-106E6;0.283819!10488-107B2;0.641809!10196-103E7;0.19833!10071-101I8;0.440555!10071-101I8;0.438875!10041-101F5;0.613493!10451-106G1;0.772057!10450-106F9;0.00273251!10604-108F1;0.433313!10605-108F2;0.95024!10606-108F3;0.908684!10603-108E9;0.702048!10497-107C2;0.906683!10448-106F7;0.825923!10643-109A4;0.252771!10426-106D3;0.519934!10431-106D8;0.0749178!10197-103E8;0.06433!10443-106F2;0.212551!10815-111B5;0.989018!10816-111B6;0.0153776!10817-111B7;0.00312825!10015-101C6;0.0931731!10410-106B5;0.100404!10054-101G9;0.0581455!10758-110E2;0.0738395!10711-109H9;0.540854!10040-101F4;0.474571!10470-106I2;0.0720723!10415-106C1;0.0774551!10198-103E9;0.272611!10614-108G2;0.0857823!10612-108F9;0.242551!10549-107H9;0.775493!10615-108G3;0.721208!10487-107B1;0.0662202!10433-106E1;0.691803!10688-109F4;0.194808!10444-106F3;0.00406962!10444-106F3;0.0726769!10485-107A8;0.0806544!10413-106B8;0.46963!10175-103C4;0.670633!10161-103A8;0.648188!12131-128D7;0.193064!10624-108H3;0.0508211!10712-109I1;0.883021!10205-103F7;0.13938!10206-103F8;0.00279468!10207-103F9;0.0321905!10050-101G5;2.91077e-05!10051-101G6;0.000691133!10016-101C7;0.0343645!10046-101G1;0.0134511!10778-110G4;0.0262995!10633-108I3;0.885369!10818-111B8;0.0116136!10819-111B9;0.210728!10820-111C1;0.234012!10484-107A7;0.213508!10808-111A7;0.0449285!10169-103B7;0.17868!10153-102I9;0.36405!13425-144D5;0.238724!13433-144E4;0.130326!13437-144E8;0.33907!11904-125F5;0.215912!11905-125F6;0.734136!10039-101F3;0.303867!10791-110H8;0.110211!10017-101C8;0.747789!10045-101F9;0.865031!10509-107D5;0.157723!10839-111E2;0.43221!10692-109F8;0.671539!10079-102A7;0.0957064!10078-102A6;0.109091!10721-110A1;0.0120406!10569-108B2;0.0301186!10570-108B3;0.433014!10571-108B4;0.311315!10647-109A8;0.988149!10752-110D5;0.435653!10782-110G8;0.0102875!10726-110A6;0.194164!10018-101C9;0.11962!10086-102B5;0.200996!10182-103D2;2.47217e-05!10165-103B3;0.975275!10499-107C4;0.349092!10408-106B3;0.1644!10019-101D1;0.626996!10068-101I5;0.55959!10075-102A3;0.549273!10077-102A5;0.844856!10727-110A7;0.659074!10775-110G1;0.870807!10412-106B7;0.105915!12231-129F8;0.287122!12232-129F9;3.45029e-05!12233-129G1;0.000283995!12234-129G2;0.00211235!10414-106B9;0.000593851!10170-103B8;0.365376!10183-103D3;0.313161!10150-102I6;0.220335!10174-103C3;0.0995642!10155-103A2;0.597214!10038-101F2;0.390937!10838-111E1;0.552793!10759-110E3;0.029004!10514-107E1;0.567569!10465-106H6;0.0270258!10691-109F7;0.668256!10843-111E6;0.876774!10844-111E7;0.800603!11747-123G1;0.405799!11748-123G2;0.815558!11749-123G3;0.710783!11750-123G4;0.891705!11751-123G5;0.958416!11840-124H4;0.704365!11752-123G6;0.846473!11753-123G7;0.416576!11754-123G8;0.428506!11755-123G9;0.475756!11756-123H1;0.545247!11833-124G6;0.576576!11760-123H5;0.29469!11836-124G9;0.740185!11758-123H3;0.809005!11835-124G8;0.325064!11762-123H7;0.866108!11838-124H2;0.535129!11757-123H2;0.385853!11759-123H4;0.5897!11761-123H6;0.299101!11842-124H6;0.933324!11837-124H1;0.149279!10568-108B1;0.605596!13230-141I8;0.704251!13231-141I9;0.870445!10696-109G3;0.695279!10493-107B7;0.335386!10494-107B8;0.732944!10850-111F4;0.95681!10851-111F5;0.0873356!10852-111F6;0.562485!10853-111F7;0.191357!10854-111F8;0.603239!10855-111F9;0.667148!10856-111G1;0.479145!10847-111F1;0.79564!10846-111E9;0.562426!10848-111F2;0.0825493!10845-111E8;0.584924!10857-111G2;0.742919!10858-111G3;0.849435!10156-103A3;0.327641!11901-125F2;0.107027!11902-125F3;0.0277512!11903-125F4;0.0161743!10689-109F5;0.00161335!10648-109A9;0.654547!10784-110H1;0.160997!10744-110C6;0.0324389!10772-110F7;0.819325!10474-106I6;0.245332!10600-108E6;0.000988931!10684-109E9;0.267354!12226-129F3;0.278661!12227-129F4;0.148562!10508-107D4;0.297399!10539-107G8;0.86041!10607-108F4;0.591257!10555-107I6;0.92637!10774-110F9;0.108105!10637-108I7;0.825853!10663-109C6;0.143257!10728-110A8;0.00922152!10729-110A9;0.0869757!10430-106D7;0.100005!10730-110B1;0.506665!10813-111B3;0.408359!10812-111B2;0.31944!10037-101F1;0.826523!10172-103C1;0.149733!10163-103B1;0.183362!10076-102A4;0.110855!10073-102A1;0.311922!10036-101E9;0.501837!10195-103E6;0.224218!10277-104E7;0.146853!10434-106E2;0.964127!10550-107I1;0.342388!10545-107H5;0.275354!10544-107H4;0.287849!10704-109H2;0.0269669!10510-107D6;0.204067!10558-107I9;0.289836!10020-101D2;0.514669!10732-110B3;0.0105329!10049-101G4;0.557581!10698-109G5;0.537299!10437-106E5;0.547894!10417-106C3;0.668381!10035-101E8;0.244391!10171-103B9;0.15536!10157-103A4;0.235805!10034-101E7;0.111767!10072-101I9;0.171591!10199-103F1;0.327547!10200-103F2;0.832445!10697-109G4;0.0184276!10723-110A3;0.0480552!10179-103C8;0.787615!10160-103A7;0.545941!10180-103C9;0.0968515!10162-103A9;0.140894!10021-101D3;0.0341894!10840-111E3;0.0168942!10706-109H4;0.467355!10033-101E6;0.19658!10032-101E5;0.22468!10490-107B4;0.229156!10439-106E7;0.980133!10022-101D4;0.326758!10176-103C5;0.165338!10469-106I1;0.139674!10067-101I4;0.00250752!10411-106B6;0.422698!10471-106I3;0.0322587!10030-101E3;0.0453737!10475-106I7;0.360291!10787-110H4;0.690029!10477-106I9;0.0800199!10695-109G2;0.00564932!11771-123I7;0.0498625!11772-123I8;0.796999!11773-123I9;0.625771!10093-102C3;0.181214!10442-106F1;0.569463!10442-106F1;0.0873798!10201-103F3;0.0920419!10639-108I9;0.525829!11843-124H7;0.345777!11841-124H5;0.294454!10693-109F9;0.930789!10436-106E4;0.228423!10483-107A6;0.639401!10282-104F3;0.013408!10023-101D5;0.00979508!10066-101I3;0.000811652!10065-101I2;0.0240293!10800-110I8;0.129133!10610-108F7;0.279968!10841-111E4;6.3489e-05!10541-107H1;0.00278595!10842-111E5;0.703593!10562-108A4;0.15427!10024-101D6;0.408738!10064-101I1;0.475485!10609-108F6;0.164712!10048-101G3;0.788558!10781-110G7;0.17418!10181-103D1;0.321947!10159-103A6;0.860221!10056-101H2;0.224053!10737-110B8;0.706414!10025-101D7;0.223123!10044-101F8;0.853748!10424-106D1;0.214044!10463-106H4;0.0619379!10616-108G4;0.666983!10486-107A9;0.569877!10062-101H8;0.0694522!10202-103F4;0.0232609!10158-103A5;0.759237!10441-106E9;0.292818!10031-101E4;0.694573!10063-101H9;0.289693!10063-101H9;0.527421!11763-123H8;0.992075!11765-123I1;0.138042!11768-123I4;0.354409!10807-111A6;0.948537!10790-110H7;0.762218!10798-110I6;0.439281!10786-110H3;0.105884!10591-108D6;0.389183!10593-108D8;0.802565!10590-108D5;0.994936!10026-101D8;0.259075!10096-102C6;0.128828!10168-103B6;0.253387!10154-103A1;0.459517!10209-103G2;0.152469!10061-101H7;0.0597467!10027-101D9;0.263866!10043-101F7;0.202684!10783-110G9;0.24778!10028-101E1;0.859!10060-101H6;0.855581!10203-103F5;0.404051!10059-101H5;0.0194396!10047-101G2;0.0383864!10029-101E2;0.258893!10058-101H4;0.048472!10418-106C4;0.0339934!10492-107B6;0.123666!10694-109G1;0.136743!10797-110I5;0.1443!10057-101H3;0.192421!10100-102D1;0.0171784!10055-101H1;0.379799!10204-103F6;0.499467!10191-103E2;0.00668827!10563-108A5;0.0124791
|name=2-TATATAGCCG,CNhs12857,BestGuess:TBP_f1_HM09(0.674770050325601),T:347.0(13.45%),B:2866.3(6.19%),P:1e-40
|name=2-TATATAGCCG,CNhs12857,BestGuess:TBP_f1_HM09(0.674770050325601),T:347.0(13.45%),B:2866.3(6.19%),P:1e-40
|tomtom_result=UME6#MA0412.1;-1;0.000417482;0.198721;0.165217;9;TATATAGCCG;AATTAGCCGCCGA;-!TBP#MA0386.1;3;0.000522015;0.248479;0.165217;10;TATATAGCCG;GTATAAAAGGCGGGG;+!TBP#MA0386.1;3;0.000522015;0.248479;0.165217;10;TATATAGCCG;GTATAAAAGGCGGGG;+!SIG1#MA0379.1;-1;0.00320914;1.52755;0.747365;5;TATATAGCCG;ATATA;+!TBP#MA0386.1;9;0.00450703;2.14535;0.747365;10;TATATAGCCG;GACTAGATATATATATTCGAT;+!YDR520C#MA0422.1;-1;0.00783352;3.72875;0.747365;9;TATATAGCCG;TTATCTCCGG;-!AGL3#MA0001.1;3;0.00849017;4.04132;0.747365;7;TATATAGCCG;CCATAAATAG;+!YRR1#MA0439.1;0;0.00867742;4.13045;0.747365;10;TATATAGCCG;CTTATCTCCGC;+!HAP1#MA0312.1;-2;0.00912812;4.34498;0.747365;8;TATATAGCCG;TATCTCCG;-!RLM1#MA0369.1;7;0.00944542;4.49602;0.747365;10;TATATAGCCG;GGTTCTATAAATAGATCC;+!STB5#MA0392.1;-2;0.0124692;5.93535;0.852062;8;TATATAGCCG;TAACACCG;-!NHP6A#MA0345.1;9;0.0129019;6.1413;0.852062;10;TATATAGCCG;TCATTTTTATATATAGGTCAT;-!SRF#MA0083.1;3;0.0141695;6.74469;0.852062;9;TATATAGCCG;CCATATATGGGC;-!YPR196W#MA0437.1;-1;0.0143581;6.83448;0.852062;9;TATATAGCCG;ATTTCTCCG;+!Dof2#MA0020.1;-3;0.0197324;9.39262;0.997369;6;TATATAGCCG;AAAGCA;+
}}
}}

Latest revision as of 13:21, 7 September 2012

Full Name: 2-TATATAGCCG,CNhs12857,BestGuess:TBP_f1_HM09(0.674770050325601),T:347.0(13.45%),B:2866.3(6.19%),P:1e-40

Motif matrix
POACGT
170.78810.75710.41255.045
2281.7649.7160.34755.173
397.160.3478.328241.165
4305.369.02224.9847.634
591.60819.77917.003218.61
6276.2128.67556.5615.552
718.39147.886232.4948.233
826.372241.85965.58313.186
928.801231.10270.09417.003
1031.2345.804260.5979.369

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
UME6#MA0412.1-10.0004174820.1987210.1652179TATATAGCCGAATTAGCCGCCGA-
TBP#MA0386.130.0005220150.2484790.16521710TATATAGCCGGTATAAAAGGCGGGG+
TBP#MA0386.130.0005220150.2484790.16521710TATATAGCCGGTATAAAAGGCGGGG+
SIG1#MA0379.1-10.003209141.527550.7473655TATATAGCCGATATA+
TBP#MA0386.190.004507032.145350.74736510TATATAGCCGGACTAGATATATATATTCGAT+
YDR520C#MA0422.1-10.007833523.728750.7473659TATATAGCCGTTATCTCCGG-
AGL3#MA0001.130.008490174.041320.7473657TATATAGCCGCCATAAATAG+
YRR1#MA0439.100.008677424.130450.74736510TATATAGCCGCTTATCTCCGC+
HAP1#MA0312.1-20.009128124.344980.7473658TATATAGCCGTATCTCCG-
RLM1#MA0369.170.009445424.496020.74736510TATATAGCCGGGTTCTATAAATAGATCC+
STB5#MA0392.1-20.01246925.935350.8520628TATATAGCCGTAACACCG-
NHP6A#MA0345.190.01290196.14130.85206210TATATAGCCGTCATTTTTATATATAGGTCAT-
SRF#MA0083.130.01416956.744690.8520629TATATAGCCGCCATATATGGGC-
YPR196W#MA0437.1-10.01435816.834480.8520629TATATAGCCGATTTCTCCG+
Dof2#MA0020.1-30.01973249.392620.9973696TATATAGCCGAAAGCA+
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