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MacroAPE 1083:6-GCGGTTTTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;171.444;195.936;1356.48;160.14!2;137.532;1296.192;233.616;216.66!3;135.648;188.4;1377.204;182.748!4;152.604;188.4;1316.916;226.08!5;133.764;...")
 
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;0.768493!10789-110H6;0.728028!10828-111C9;0.505638!10788-110H5;0.81077!10792-110H9;0.405071!10765-110E9;0.713461!10829-111D1;0.916768!10830-111D2;0.906906!10831-111D3;0.941925!10832-111D4;0.55613!10833-111D5;0.925631!10764-110E8;0.941516!10770-110F5;0.972759!10399-106A3;0.825703!10400-106A4;0.96046!10405-106A9;0.979761!10834-111D6;0.962956!10835-111D7;0.675545!10836-111D8;0.761452!10837-111D9;0.654943!10699-109G6;0.789355!10802-111A1;0.781013!10796-110I4;0.688208!10010-101C1;0.383858!10810-111A9;0.310743!10421-106C7;0.58802!10708-109H6;0.739476!12235-129G3;0.924091!12236-129G4;0.435215!12237-129G5;0.116153!10167-103B5;0.410976!10151-102I7;0.125982!10428-106D5;0.260507!10795-110I3;0.121408!10805-111A4;0.902727!10052-101G7;0.700953!10189-103D9;0.695044!10589-108D4;0.48449!10425-106D2;0.15241!10427-106D4;0.341003!10702-109G9;0.594008!10432-106D9;0.29364!10496-107C1;0.26336!10718-109I7;0.831088!10011-101C2;0.990514!10053-101G8;0.169679!10686-109F2;0.934903!10084-102B3;0.283759!10012-101C3;0.278601!10085-102B4;0.182863!10482-107A5;0.581179!10419-106C5;0.812519!10080-102A8;0.538132!10760-110E4;0.611699!10709-109H7;0.604631!10710-109H8;0.866424!10703-109H1;0.822553!10719-109I8;0.592317!10642-109A3;0.49992!10177-103C6;0.807404!10164-103B2;0.302629!10173-103C2;0.241467!10166-103B4;0.594235!10083-102B2;0.430799!10188-103D8;0.292263!10552-107I3;0.12645!10553-107I4;0.993274!10013-101C4;0.94322!10536-107G5;0.0961216!10618-108G6;0.455137!10423-106C9;0.405351!10785-110H2;0.581613!12238-129G6;0.744777!12239-129G7;0.25568!12240-129G8;0.735966!10416-106C2;0.244073!10801-110I9;0.890936!10766-110F1;0.482269!10824-111C5;0.887216!10825-111C6;0.611392!10826-111C7;0.684393!10454-106G4;0.567603!10409-106B4;0.974402!10638-108I8;0.878472!10636-108I6;0.649057!10513-107D9;0.826803!10420-106C6;0.965163!10082-102B1;0.683391!10014-101C5;0.3079!10070-101I7;0.06889!10452-106G2;0.120338!10453-106G3;0.32088!10449-106F8;0.257698!10042-101F6;0.259364!10069-101I6;0.235103!10193-103E4;0.293707!10631-108I1;0.102237!10438-106E6;0.897585!10488-107B2;0.931087!10196-103E7;0.454345!10071-101I8;0.00308482!10071-101I8;0.370653!10041-101F5;0.559246!10451-106G1;0.406318!10450-106F9;0.907062!10604-108F1;0.923788!10605-108F2;0.0476558!10606-108F3;0.555878!10603-108E9;0.0986485!10497-107C2;0.133433!10448-106F7;0.307083!10643-109A4;0.126636!10426-106D3;0.330411!10431-106D8;0.352545!10197-103E8;0.421957!10443-106F2;0.0755609!10815-111B5;0.481939!10816-111B6;0.282544!10817-111B7;0.351411!10015-101C6;0.291103!10410-106B5;0.0458565!10054-101G9;0.793308!10758-110E2;0.0952761!10711-109H9;0.0882135!10040-101F4;0.0870585!10470-106I2;0.169806!10415-106C1;0.957693!10198-103E9;0.036509!10614-108G2;0.10619!10612-108F9;0.971016!10549-107H9;0.830477!10615-108G3;0.545747!10487-107B1;0.718044!10433-106E1;0.353544!10688-109F4;0.055726!10444-106F3;0.780983!10444-106F3;0.0588143!10485-107A8;0.0407114!10413-106B8;0.434554!10175-103C4;0.0986504!10161-103A8;0.170168!12131-128D7;0.258989!10624-108H3;0.756848!10712-109I1;0.892989!10205-103F7;0.468011!10206-103F8;0.583847!10207-103F9;0.290597!10050-101G5;0.510863!10051-101G6;0.689476!10016-101C7;0.399602!10046-101G1;0.610711!10778-110G4;0.946935!10633-108I3;0.846323!10818-111B8;0.454017!10819-111B9;0.784901!10820-111C1;0.784076!10484-107A7;0.761305!10808-111A7;0.304875!10169-103B7;0.529362!10153-102I9;0.175234!13425-144D5;0.276437!13433-144E4;0.639256!13437-144E8;0.55682!11904-125F5;0.791816!11905-125F6;0.783543!10039-101F3;0.272651!10791-110H8;0.194009!10017-101C8;0.752215!10045-101F9;0.103759!10509-107D5;0.826975!10839-111E2;0.46891!10692-109F8;0.62284!10079-102A7;0.149682!10078-102A6;0.426054!10721-110A1;0.526044!10569-108B2;0.846788!10570-108B3;0.614554!10571-108B4;0.587136!10647-109A8;0.894384!10752-110D5;0.0515618!10782-110G8;0.640902!10726-110A6;0.865572!10018-101C9;0.157544!10086-102B5;0.00605215!10182-103D2;0.442386!10165-103B3;0.408159!10499-107C4;0.297849!10408-106B3;0.248782!10019-101D1;0.098226!10068-101I5;0.393801!10075-102A3;0.307467!10077-102A5;0.153791!10727-110A7;0.635778!10775-110G1;0.86188!10412-106B7;0.592482!12231-129F8;0.823878!12232-129F9;0.291057!12233-129G1;0.173769!12234-129G2;0.294908!10414-106B9;0.259113!10170-103B8;0.59066!10183-103D3;0.24717!10150-102I6;0.129583!10174-103C3;0.265575!10155-103A2;0.210501!10038-101F2;0.309332!10838-111E1;0.369387!10759-110E3;0.983919!10514-107E1;0.161286!10465-106H6;0.230503!10691-109F7;0.488782!10843-111E6;0.133621!10844-111E7;0.735467!11747-123G1;0.351387!11748-123G2;0.817654!11749-123G3;0.923288!11750-123G4;0.999311!11751-123G5;0.999358!11840-124H4;0.560749!11752-123G6;0.637236!11753-123G7;0.93648!11754-123G8;0.840582!11755-123G9;0.930989!11756-123H1;0.347439!11833-124G6;0.734482!11760-123H5;0.652438!11836-124G9;0.698437!11758-123H3;0.774187!11835-124G8;0.818588!11762-123H7;0.855735!11838-124H2;0.869368!11757-123H2;0.39205!11759-123H4;0.463641!11761-123H6;0.495028!11842-124H6;0.816402!11837-124H1;0.989644!10568-108B1;0.864933!13230-141I8;0.806224!13231-141I9;0.517035!10696-109G3;0.661482!10493-107B7;0.754381!10494-107B8;0.121595!10850-111F4;0.516779!10851-111F5;0.157125!10852-111F6;0.192402!10853-111F7;0.588853!10854-111F8;0.431828!10855-111F9;0.616085!10856-111G1;0.99261!10847-111F1;0.705033!10846-111E9;0.352136!10848-111F2;0.200526!10845-111E8;0.249789!10857-111G2;0.224738!10858-111G3;0.377263!10156-103A3;0.129538!11901-125F2;0.24404!11902-125F3;0.970684!11903-125F4;0.651955!10689-109F5;0.977179!10648-109A9;0.835438!10784-110H1;0.35722!10744-110C6;0.343426!10772-110F7;0.943532!10474-106I6;0.972018!10600-108E6;0.407977!10684-109E9;0.1335!12226-129F3;0.000738392!12227-129F4;0.894012!10508-107D4;0.800595!10539-107G8;0.94668!10607-108F4;0.767438!10555-107I6;0.989531!10774-110F9;0.69068!10637-108I7;0.944967!10663-109C6;0.884891!10728-110A8;0.835821!10729-110A9;0.286508!10430-106D7;0.746795!10730-110B1;0.592729!10813-111B3;0.651559!10812-111B2;0.954071!10037-101F1;0.877948!10172-103C1;0.184553!10163-103B1;0.167374!10076-102A4;0.344505!10073-102A1;0.123377!10036-101E9;0.50613!10195-103E6;0.206237!10277-104E7;0.167237!10434-106E2;0.236037!10550-107I1;0.749107!10545-107H5;0.791542!10544-107H4;0.776886!10704-109H2;0.245898!10510-107D6;0.549234!10558-107I9;0.00444931!10020-101D2;0.437475!10732-110B3;0.230106!10049-101G4;0.501838!10698-109G5;0.104726!10437-106E5;0.336207!10417-106C3;0.64593!10035-101E8;0.620316!10171-103B9;0.172106!10157-103A4;0.188996!10034-101E7;0.301583!10072-101I9;0.197383!10199-103F1;0.449028!10200-103F2;0.00371656!10697-109G4;0.0154296!10723-110A3;0.677558!10179-103C8;0.558704!10160-103A7;0.139056!10180-103C9;0.251109!10162-103A9;0.149971!10021-101D3;0.192749!10840-111E3;0.470298!10706-109H4;0.492855!10033-101E6;0.0396085!10032-101E5;0.253069!10490-107B4;0.129509!10439-106E7;0.640634!10022-101D4;0.667425!10176-103C5;0.0606563!10469-106I1;0.153815!10067-101I4;0.409323!10411-106B6;0.289426!10471-106I3;0.867574!10030-101E3;0.610193!10475-106I7;0.13697!10787-110H4;0.333307!10477-106I9;0.353053!10695-109G2;0.280861!11771-123I7;0.350164!11772-123I8;0.154262!11773-123I9;0.0159123!10093-102C3;0.21324!10442-106F1;0.046591!10442-106F1;0.112026!10201-103F3;0.117216!10639-108I9;0.0104511!11843-124H7;0.975989!11841-124H5;0.593417!10693-109F9;0.955435!10436-106E4;0.853082!10483-107A6;0.635255!10282-104F3;0.25306!10023-101D5;0.182011!10066-101I3;0.519338!10065-101I2;0.926012!10800-110I8;0.272051!10610-108F7;0.280327!10841-111E4;0.463369!10541-107H1;0.974362!10842-111E5;0.838869!10562-108A4;0.364068!10024-101D6;0.853823!10064-101I1;0.0778063!10609-108F6;0.22749!10048-101G3;0.756664!10781-110G7;0.0967977!10181-103D1;0.933155!10159-103A6;0.276833!10056-101H2;0.428813!10737-110B8;0.475663!10025-101D7;0.868898!10044-101F8;0.470444!10424-106D1;0.821049!10463-106H4;0.418109!10616-108G4;0.806637!10486-107A9;0.429456!10062-101H8;0.666563!10202-103F4;0.637984!10158-103A5;0.00199124!10441-106E9;0.245862!10031-101E4;0.498872!10063-101H9;0.183985!10063-101H9;0.61641!11763-123H8;0.159981!11765-123I1;0.545781!11768-123I4;0.651698!10807-111A6;0.557538!10790-110H7;0.639268!10798-110I6;0.660195!10786-110H3;0.886522!10591-108D6;0.316113!10593-108D8;0.557735!10590-108D5;0.223135!10026-101D8;0.444054!10096-102C6;0.199249!10168-103B6;0.833498!10154-103A1;0.174497!10209-103G2;0.244504!10061-101H7;0.0617904!10027-101D9;0.666004!10043-101F7;0.967982!10783-110G9;0.951465!10028-101E1;0.291347!10060-101H6;0.22293!10203-103F5;0.268533!10059-101H5;0.0745279!10047-101G2;0.121468!10029-101E2;0.511219!10058-101H4;0.262054!10418-106C4;0.372338!10492-107B6;0.297058!10694-109G1;0.0989981!10797-110I5;0.0483932!10057-101H3;0.230641!10100-102D1;0.738459!10055-101H1;0.131967!10204-103F6;0.0956971!10191-103E2;0.441187!10563-108A5;0.406036
|name=6-GCGGTTTTTT,CNhs10854,BestGuess:ZN384_f1_HM09(0.733013837099803),T:1884.0(48.37%),B:14699.1(34.03%),P:1e-75
|name=6-GCGGTTTTTT,CNhs10854,BestGuess:ZN384_f1_HM09(0.733013837099803),T:1884.0(48.37%),B:14699.1(34.03%),P:1e-75
|tomtom_result=dl_1#MA0022.1;0;0.00121828;0.579902;0.80521;10;GCGGTTTTTT;GGGGTTTTTCCC;+!run::Bgb#MA0242.1;2;0.00297942;1.4182;0.80521;7;GCGGTTTTTT;TTGCGGTTA;-!Gamyb#MA0034.1;1;0.00394244;1.8766;0.80521;9;GCGGTTTTTT;GGCGGTTGTC;-!DAL81#MA0290.1;10;0.00464315;2.21014;0.80521;9;GCGGTTTTTT;AATCCCGCCCGCGGCTTTT;-!TBP#MA0108.2;1;0.00488991;2.3276;0.80521;10;GCGGTTTTTT;CCCCGCCTTTTATAC;-!TBP#MA0108.2;1;0.00507614;2.41624;0.80521;10;GCGGTTTTTT;CCCCGCCTTTTATAC;-!NDT80#MA0343.1;2;0.0086497;4.11726;0.999747;10;GCGGTTTTTT;TTGCGTTTTTGTGGCCGGAAA;-!HMG-I/Y#MA0045.1;5;0.0174173;8.29064;0.999747;10;GCGGTTTTTT;GTTTTTCCATTTGTTG;-!UME6#MA0412.1;3;0.0175957;8.37553;0.999747;10;GCGGTTTTTT;TCGGCGGCTAATT;+
}}
}}

Latest revision as of 13:28, 7 September 2012

Full Name: 6-GCGGTTTTTT,CNhs10854,BestGuess:ZN384_f1_HM09(0.733013837099803),T:1884.0(48.37%),B:14699.1(34.03%),P:1e-75

Motif matrix
POACGT
1171.444195.9361356.48160.14
2137.5321296.192233.616216.66
3135.648188.41377.204182.748
4152.604188.41316.916226.08
5133.764197.82201.5881350.828
6175.212139.416197.821371.552
7188.4177.096207.241311.264
8173.328220.428220.4281269.816
9162.024229.848205.3561286.772
10222.312199.704209.1241252.86

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
dl_1#MA0022.100.001218280.5799020.8052110GCGGTTTTTTGGGGTTTTTCCC+
run::Bgb#MA0242.120.002979421.41820.805217GCGGTTTTTTTTGCGGTTA-
Gamyb#MA0034.110.003942441.87660.805219GCGGTTTTTTGGCGGTTGTC-
DAL81#MA0290.1100.004643152.210140.805219GCGGTTTTTTAATCCCGCCCGCGGCTTTT-
TBP#MA0108.210.004889912.32760.8052110GCGGTTTTTTCCCCGCCTTTTATAC-
TBP#MA0108.210.005076142.416240.8052110GCGGTTTTTTCCCCGCCTTTTATAC-
NDT80#MA0343.120.00864974.117260.99974710GCGGTTTTTTTTGCGTTTTTGTGGCCGGAAA-
HMG-I/Y#MA0045.150.01741738.290640.99974710GCGGTTTTTTGTTTTTCCATTTGTTG-
UME6#MA0412.130.01759578.375530.99974710GCGGTTTTTTTCGGCGGCTAATT+
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