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MacroAPE 1083:AAGCAGGAA,motif523: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;544.32;1.008;148.176;314.496!2;891.072;1.008;81.648;34.272!3;1.008;95.76;910.224;1.008!4;1.008;559.44;157.248;290.304!5;697.536;115.92;1.008...")
 
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0789-110H6;0.165718!10828-111C9;0.189907!10788-110H5;0.447376!10792-110H9;0.322421!10765-110E9;0.245609!10829-111D1;0.341037!10830-111D2;0.235499!10831-111D3;0.764563!10832-111D4;0.255323!10833-111D5;0.228699!10764-110E8;0.2016!10770-110F5;0.4868!10399-106A3;0.643259!10400-106A4;0.257993!10405-106A9;0.290155!10834-111D6;0.248399!10835-111D7;0.283455!10836-111D8;0.100818!10837-111D9;0.412724!10699-109G6;0.155359!10802-111A1;0.712552!10796-110I4;0.396953!10010-101C1;0.386329!10810-111A9;0.505674!10421-106C7;0.0184808!10708-109H6;0.385531!12235-129G3;0.00362991!12236-129G4;0.0964597!12237-129G5;0.613235!10167-103B5;0.185834!10151-102I7;0.726111!10428-106D5;0.481464!10795-110I3;0.255525!10805-111A4;0.0155607!10052-101G7;0.0379695!10189-103D9;0.0458007!10589-108D4;0.0486557!10425-106D2;0.0397639!10427-106D4;0.231464!10702-109G9;0.198948!10432-106D9;0.501715!10496-107C1;0.614615!10718-109I7;0.342994!10011-101C2;0.341436!10053-101G8;0.0153861!10686-109F2;0.605516!10084-102B3;0.0230454!10012-101C3;0.818252!10085-102B4;0.657403!10482-107A5;0.803679!10419-106C5;0.773956!10080-102A8;0.839264!10760-110E4;0.143936!10709-109H7;0.997854!10710-109H8;0.484621!10703-109H1;0.19991!10719-109I8;0.071719!10642-109A3;0.165653!10177-103C6;0.337558!10164-103B2;0.733073!10173-103C2;0.530401!10166-103B4;0.870809!10083-102B2;0.497368!10188-103D8;0.822534!10552-107I3;0.592532!10553-107I4;0.00465392!10013-101C4;0.374566!10536-107G5;0.0630973!10618-108G6;0.225695!10423-106C9;0.646778!10785-110H2;0.363676!12238-129G6;0.362824!12239-129G7;0.0523273!12240-129G8;0.100392!10416-106C2;0.0463511!10801-110I9;0.0640821!10766-110F1;0.357658!10824-111C5;0.630056!10825-111C6;0.0326329!10826-111C7;0.0461312!10454-106G4;0.0520777!10409-106B4;0.0229313!10638-108I8;0.372215!10636-108I6;0.129072!10513-107D9;0.917182!10420-106C6;0.184965!10082-102B1;0.142985!10014-101C5;0.050461!10070-101I7;0.00619863!10452-106G2;0.0202776!10453-106G3;0.0287274!10449-106F8;0.0341878!10042-101F6;0.0181303!10069-101I6;0.561892!10193-103E4;0.85946!10631-108I1;0.731805!10438-106E6;0.0494375!10488-107B2;0.263172!10196-103E7;0.0194003!10071-101I8;0.00749821!10071-101I8;0.0294638!10041-101F5;0.566268!10451-106G1;0.252677!10450-106F9;0.0133287!10604-108F1;0.0326004!10605-108F2;0.68344!10606-108F3;0.451308!10603-108E9;0.981896!10497-107C2;0.895853!10448-106F7;0.332698!10643-109A4;0.230045!10426-106D3;0.690168!10431-106D8;0.925429!10197-103E8;0.387997!10443-106F2;0.0647386!10815-111B5;0.977451!10816-111B6;0.0191824!10817-111B7;0.0894031!10015-101C6;0.0258693!10410-106B5;0.0270948!10054-101G9;0.416451!10758-110E2;0.348529!10711-109H9;0.773297!10040-101F4;0.0566289!10470-106I2;0.711706!10415-106C1;0.845173!10198-103E9;0.256109!10614-108G2;0.00247253!10612-108F9;0.097887!10549-107H9;0.632102!10615-108G3;0.0684885!10487-107B1;0.214029!10433-106E1;0.0019462!10688-109F4;0.253342!10444-106F3;0.65623!10444-106F3;0.505654!10485-107A8;0.655589!10413-106B8;0.35724!10175-103C4;0.338672!10161-103A8;0.851685!12131-128D7;0.539077!10624-108H3;0.724042!10712-109I1;0.244106!10205-103F7;0.154146!10206-103F8;0.569575!10207-103F9;0.407995!10050-101G5;0.084848!10051-101G6;0.750738!10016-101C7;0.970927!10046-101G1;0.799657!10778-110G4;0.496316!10633-108I3;0.255363!10818-111B8;0.725021!10819-111B9;0.084207!10820-111C1;0.0819712!10484-107A7;0.0888032!10808-111A7;0.389537!10169-103B7;0.16137!10153-102I9;0.826988!13425-144D5;0.441336!13433-144E4;0.589456!13437-144E8;0.461331!11904-125F5;0.354651!11905-125F6;0.775725!10039-101F3;0.598364!10791-110H8;0.618212!10017-101C8;0.666213!10045-101F9;0.0790376!10509-107D5;0.0965887!10839-111E2;0.455048!10692-109F8;0.0129108!10079-102A7;0.265907!10078-102A6;0.762346!10721-110A1;0.717181!10569-108B2;0.239893!10570-108B3;0.95024!10571-108B4;0.604396!10647-109A8;0.922102!10752-110D5;0.496665!10782-110G8;0.507589!10726-110A6;0.755513!10018-101C9;0.155009!10086-102B5;0.357166!10182-103D2;0.315476!10165-103B3;0.7994!10499-107C4;0.721429!10408-106B3;0.991622!10019-101D1;0.479732!10068-101I5;0.0155445!10075-102A3;0.00982391!10077-102A5;0.0769823!10727-110A7;0.750912!10775-110G1;0.233734!10412-106B7;0.203218!12231-129F8;0.207756!12232-129F9;0.74381!12233-129G1;0.738819!12234-129G2;0.769288!10414-106B9;0.525834!10170-103B8;0.374784!10183-103D3;0.961099!10150-102I6;0.769129!10174-103C3;0.495243!10155-103A2;0.948327!10038-101F2;0.485892!10838-111E1;0.602791!10759-110E3;0.320807!10514-107E1;0.287269!10465-106H6;0.192178!10691-109F7;0.15667!10843-111E6;0.929927!10844-111E7;0.489944!11747-123G1;0.390949!11748-123G2;0.752749!11749-123G3;0.497071!11750-123G4;0.756224!11751-123G5;0.862013!11840-124H4;0.691192!11752-123G6;0.982377!11753-123G7;0.794331!11754-123G8;0.458496!11755-123G9;0.606704!11756-123H1;0.98417!11833-124G6;0.290799!11760-123H5;0.589962!11836-124G9;0.254122!11758-123H3;0.746424!11835-124G8;0.562912!11762-123H7;0.26927!11838-124H2;0.450864!11757-123H2;0.575128!11759-123H4;0.977869!11761-123H6;0.418294!11842-124H6;0.0660982!11837-124H1;0.356341!10568-108B1;0.185695!13230-141I8;0.00191427!13231-141I9;0.798797!10696-109G3;0.667737!10493-107B7;0.139819!10494-107B8;0.101468!10850-111F4;0.7169!10851-111F5;0.00688216!10852-111F6;0.36266!10853-111F7;0.948127!10854-111F8;0.101009!10855-111F9;0.775113!10856-111G1;0.257238!10847-111F1;0.373199!10846-111E9;0.157245!10848-111F2;0.129695!10845-111E8;0.122419!10857-111G2;0.959523!10858-111G3;2.58052e-05!10156-103A3;0.0338121!11901-125F2;0.4495!11902-125F3;0.631341!11903-125F4;0.71429!10689-109F5;0.671541!10648-109A9;0.00947521!10784-110H1;0.248565!10744-110C6;0.58827!10772-110F7;0.111965!10474-106I6;0.302214!10600-108E6;0.138018!10684-109E9;0.857614!12226-129F3;0.712903!12227-129F4;0.880605!10508-107D4;2.9508e-06!10539-107G8;0.289603!10607-108F4;0.0244265!10555-107I6;0.164281!10774-110F9;0.163954!10637-108I7;0.0119504!10663-109C6;0.337614!10728-110A8;0.220044!10729-110A9;0.217452!10430-106D7;0.216869!10730-110B1;0.157556!10813-111B3;0.215402!10812-111B2;0.589442!10037-101F1;0.80652!10172-103C1;0.563276!10163-103B1;0.790887!10076-102A4;0.353763!10073-102A1;0.755558!10036-101E9;0.719189!10195-103E6;0.627208!10277-104E7;0.524334!10434-106E2;0.774373!10550-107I1;0.785512!10545-107H5;0.334886!10544-107H4;0.776263!10704-109H2;0.797106!10510-107D6;0.199386!10558-107I9;0.320214!10020-101D2;0.524656!10732-110B3;0.396944!10049-101G4;0.642743!10698-109G5;0.610631!10437-106E5;0.182883!10417-106C3;0.344605!10035-101E8;0.872088!10171-103B9;0.690318!10157-103A4;0.82804!10034-101E7;0.501181!10072-101I9;0.599875!10199-103F1;0.677401!10200-103F2;0.0441582!10697-109G4;0.300697!10723-110A3;0.33482!10179-103C8;0.249325!10160-103A7;0.998721!10180-103C9;0.81815!10162-103A9;0.80513!10021-101D3;0.620336!10840-111E3;0.00795036!10706-109H4;0.0475641!10033-101E6;0.858315!10032-101E5;0.868016!10490-107B4;0.731987!10439-106E7;0.0234061!10022-101D4;0.354951!10176-103C5;0.0282874!10469-106I1;0.646198!10067-101I4;0.912123!10411-106B6;0.180219!10471-106I3;0.704776!10030-101E3;0.456852!10475-106I7;0.351152!10787-110H4;0.0695036!10477-106I9;0.0384794!10695-109G2;0.524357!11771-123I7;0.195212!11772-123I8;0.172087!11773-123I9;0.185259!10093-102C3;0.000209358!10442-106F1;0.0130803!10442-106F1;0.0406899!10201-103F3;0.0733436!10639-108I9;0.00662131!11843-124H7;0.186203!11841-124H5;0.540742!10693-109F9;0.495718!10436-106E4;0.615689!10483-107A6;0.377304!10282-104F3;0.593534!10023-101D5;0.751759!10066-101I3;0.509484!10065-101I2;0.486322!10800-110I8;0.139211!10610-108F7;0.453366!10841-111E4;0.312975!10541-107H1;0.0444929!10842-111E5;0.58151!10562-108A4;0.130182!10024-101D6;0.801378!10064-101I1;0.00213395!10609-108F6;0.188509!10048-101G3;0.972181!10781-110G7;0.0848196!10181-103D1;0.184694!10159-103A6;0.889192!10056-101H2;0.672176!10737-110B8;0.9089!10025-101D7;0.171261!10044-101F8;0.791866!10424-106D1;0.265096!10463-106H4;0.256237!10616-108G4;0.381011!10486-107A9;0.557898!10062-101H8;0.172304!10202-103F4;0.012666!10158-103A5;0.0278807!10441-106E9;0.666621!10031-101E4;0.277729!10063-101H9;0.644824!10063-101H9;0.657139!11763-123H8;0.0753404!11765-123I1;0.698189!11768-123I4;0.94269!10807-111A6;0.871312!10790-110H7;0.628328!10798-110I6;0.095792!10786-110H3;0.637469!10591-108D6;0.666151!10593-108D8;0.703908!10590-108D5;0.350935!10026-101D8;0.157016!10096-102C6;0.788166!10168-103B6;0.378747!10154-103A1;0.95313!10209-103G2;0.480752!10061-101H7;0.133421!10027-101D9;0.297783!10043-101F7;0.735139!10783-110G9;0.116618!10028-101E1;0.50304!10060-101H6;0.0395517!10203-103F5;0.0623423!10059-101H5;0.577223!10047-101G2;0.878373!10029-101E2;0.123025!10058-101H4;0.00918576!10418-106C4;0.193623!10492-107B6;0.514327!10694-109G1;0.140078!10797-110I5;0.0745071!10057-101H3;0.524206!10100-102D1;0.185813!10055-101H1;0.0757093!10204-103F6;0.111253!10191-103E2;0.00503982!10563-108A5;0.479435
|name=AAGCAGGAA,motif523,CNhs12858,T:1008.0(23.49%),B:12051.4(16.48%),P:1e-31
|name=AAGCAGGAA,motif523,CNhs12858,T:1008.0(23.49%),B:12051.4(16.48%),P:1e-31
|tomtom_result=IXR1#MA0323.1;0;0.00255584;1.21658;1;9;AAGCAGGAA;AAGCCGGAAGCGGGG;+!ELK1#MA0028.1;0;0.00558749;2.65965;1;9;AAGCAGGAA;GAGCCGGAAG;+!MCM1#MA0331.1;3;0.00750057;3.57027;1;9;AAGCAGGAA;CCCAATTAGGAA;+!FEV#MA0156.1;-3;0.0152307;7.24984;1;6;AAGCAGGAA;CAGGAAAT;+!TEAD1#MA0090.1;-1;0.0158437;7.54158;1;8;AAGCAGGAA;CGGAGGAATGTG;-
}}
}}

Latest revision as of 13:36, 7 September 2012

Full Name: AAGCAGGAA,motif523,CNhs12858,T:1008.0(23.49%),B:12051.4(16.48%),P:1e-31

Motif matrix
POACGT
1544.321.008148.176314.496
2891.0721.00881.64834.272
31.00895.76910.2241.008
41.008559.44157.248290.304
5697.536115.921.008193.536
646.36813.104947.521.008
71.0081.0081004.9761.008
8886.0321.0081.008119.952
9546.33678.624358.84824.192

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
IXR1#MA0323.100.002555841.2165819AAGCAGGAAAAGCCGGAAGCGGGG+
ELK1#MA0028.100.005587492.6596519AAGCAGGAAGAGCCGGAAG+
MCM1#MA0331.130.007500573.5702719AAGCAGGAACCCAATTAGGAA+
FEV#MA0156.1-30.01523077.2498416AAGCAGGAACAGGAAAT+
TEAD1#MA0090.1-10.01584377.5415818AAGCAGGAACGGAGGAATGTG-
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