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MacroAPE 1083:THB do: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;8.013698630136993;6.8264840182648365;17.7488584474886;2.9086757990867613!2;20.1826484018265;0.0;11.041095890410974;4.273972602739725!3;5.461...")
 
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!10464-106H5;0.153168!10827-111C8;0.0842027!10789-110H6;0.132999!10828-111C9;0.158078!10788-110H5;0.400091!10792-110H9;0.0375736!10765-110E9;0.253234!10829-111D1;0.0785013!10830-111D2;0.0299644!10831-111D3;0.050114!10832-111D4;0.0992006!10833-111D5;0.0336568!10764-110E8;0.131647!10770-110F5;0.507039!10399-106A3;0.333546!10400-106A4;0.00717341!10405-106A9;0.0138113!10834-111D6;0.0132416!10835-111D7;0.154222!10836-111D8;0.0551579!10837-111D9;0.149172!10699-109G6;0.0261612!10802-111A1;0.0248983!10796-110I4;0.280194!10010-101C1;0.451008!10810-111A9;0.0372556!10421-106C7;0.100528!10708-109H6;0.271817!12235-129G3;0.00579863!12236-129G4;0.501168!12237-129G5;0.341912!10167-103B5;0.733393!10151-102I7;0.935492!10428-106D5;0.629919!10795-110I3;0.0617568!10805-111A4;0.242031!10052-101G7;0.00578033!10189-103D9;0.0709677!10589-108D4;0.0127734!10425-106D2;0.423941!10427-106D4;0.050476!10702-109G9;0.520328!10432-106D9;0.672018!10496-107C1;0.528213!10718-109I7;0.486353!10011-101C2;0.0430333!10053-101G8;0.00797006!10686-109F2;0.177192!10084-102B3;0.907611!10012-101C3;0.727395!10085-102B4;0.643524!10482-107A5;0.454188!10419-106C5;0.165103!10080-102A8;0.0659009!10760-110E4;0.319614!10709-109H7;0.77547!10710-109H8;0.653295!10703-109H1;0.850043!10719-109I8;0.122262!10642-109A3;0.0128892!10177-103C6;0.0120404!10164-103B2;0.804139!10173-103C2;0.550452!10166-103B4;0.553454!10083-102B2;0.327648!10188-103D8;0.766574!10552-107I3;0.527414!10553-107I4;0.350305!10013-101C4;0.32491!10536-107G5;0.31652!10618-108G6;0.203972!10423-106C9;0.727051!10785-110H2;0.358063!12238-129G6;0.946703!12239-129G7;0.0644856!12240-129G8;0.340291!10416-106C2;0.349396!10801-110I9;0.309226!10766-110F1;0.150983!10824-111C5;0.0994951!10825-111C6;0.173408!10826-111C7;0.209374!10454-106G4;0.201299!10409-106B4;0.0652525!10638-108I8;0.121835!10636-108I6;0.80978!10513-107D9;0.975323!10420-106C6;0.482337!10082-102B1;0.0372272!10014-101C5;0.064347!10070-101I7;0.00100668!10452-106G2;0.156133!10453-106G3;0.928561!10449-106F8;0.829454!10042-101F6;0.756097!10069-101I6;0.303289!10193-103E4;0.0849079!10631-108I1;0.65177!10438-106E6;0.131929!10488-107B2;0.870198!10196-103E7;0.0890392!10071-101I8;0.226117!10071-101I8;0.352152!10041-101F5;0.0826645!10451-106G1;0.34724!10450-106F9;0.276599!10604-108F1;0.0800847!10605-108F2;0.0313771!10606-108F3;0.172437!10603-108E9;0.0468356!10497-107C2;0.0578625!10448-106F7;0.658716!10643-109A4;0.0363367!10426-106D3;0.557604!10431-106D8;0.632696!10197-103E8;0.609347!10443-106F2;0.0132594!10815-111B5;0.904448!10816-111B6;0.173029!10817-111B7;0.161746!10015-101C6;0.179715!10410-106B5;0.0207395!10054-101G9;0.0381722!10758-110E2;0.212378!10711-109H9;0.145638!10040-101F4;0.266611!10470-106I2;0.950641!10415-106C1;0.232234!10198-103E9;0.0669083!10614-108G2;0.0514669!10612-108F9;0.432483!10549-107H9;0.275029!10615-108G3;0.0515904!10487-107B1;0.997241!10433-106E1;0.756835!10688-109F4;0.313025!10444-106F3;0.657351!10444-106F3;0.643055!10485-107A8;0.481978!10413-106B8;0.0316358!10175-103C4;0.387743!10161-103A8;0.500869!12131-128D7;0.859912!10624-108H3;0.220847!10712-109I1;0.713694!10205-103F7;0.642175!10206-103F8;0.0520472!10207-103F9;0.0535407!10050-101G5;0.56323!10051-101G6;3.3292e-05!10016-101C7;0.00302376!10046-101G1;0.000457565!10778-110G4;0.0770124!10633-108I3;0.498133!10818-111B8;0.0829159!10819-111B9;0.0825376!10820-111C1;0.0669858!10484-107A7;0.0597078!10808-111A7;0.749762!10169-103B7;0.0077592!10153-102I9;0.920571!13425-144D5;0.767469!13433-144E4;0.412942!13437-144E8;0.521367!11904-125F5;0.574571!11905-125F6;0.461451!10039-101F3;0.360255!10791-110H8;0.980432!10017-101C8;0.981502!10045-101F9;0.00435239!10509-107D5;0.254767!10839-111E2;0.209235!10692-109F8;0.409394!10079-102A7;0.945613!10078-102A6;0.0825131!10721-110A1;0.0112297!10569-108B2;0.0486561!10570-108B3;0.150527!10571-108B4;0.181243!10647-109A8;0.552944!10752-110D5;0.277578!10782-110G8;0.346216!10726-110A6;0.265942!10018-101C9;0.214222!10086-102B5;0.00100822!10182-103D2;0.00123382!10165-103B3;0.356808!10499-107C4;0.607209!10408-106B3;0.498207!10019-101D1;0.838409!10068-101I5;0.00368076!10075-102A3;0.226453!10077-102A5;0.120521!10727-110A7;0.192585!10775-110G1;0.660259!10412-106B7;0.245497!12231-129F8;0.375659!12232-129F9;0.603397!12233-129G1;0.219295!12234-129G2;0.395228!10414-106B9;0.92056!10170-103B8;0.241504!10183-103D3;0.950898!10150-102I6;0.989871!10174-103C3;0.911727!10155-103A2;0.294632!10038-101F2;0.445162!10838-111E1;0.217291!10759-110E3;0.0129233!10514-107E1;0.0852249!10465-106H6;0.27152!10691-109F7;0.254369!10843-111E6;0.590714!10844-111E7;0.0160569!11747-123G1;0.0704334!11748-123G2;0.157014!11749-123G3;0.569192!11750-123G4;0.661077!11751-123G5;0.204237!11840-124H4;0.331271!11752-123G6;0.564823!11753-123G7;0.53229!11754-123G8;0.695624!11755-123G9;0.996316!11756-123H1;0.55219!11833-124G6;0.69944!11760-123H5;0.404818!11836-124G9;0.493428!11758-123H3;0.94467!11835-124G8;0.918599!11762-123H7;0.146792!11838-124H2;0.435432!11757-123H2;0.232328!11759-123H4;0.968621!11761-123H6;0.754652!11842-124H6;0.796606!11837-124H1;0.451872!10568-108B1;0.438344!13230-141I8;0.260403!13231-141I9;0.875486!10696-109G3;0.859815!10493-107B7;0.0597103!10494-107B8;0.922202!10850-111F4;0.930693!10851-111F5;0.684752!10852-111F6;0.661585!10853-111F7;0.879046!10854-111F8;0.0654527!10855-111F9;0.0216715!10856-111G1;0.320921!10847-111F1;0.652396!10846-111E9;0.0608177!10848-111F2;0.717963!10845-111E8;0.193522!10857-111G2;0.213006!10858-111G3;0.283392!10156-103A3;0.442645!11901-125F2;0.882887!11902-125F3;0.7605!11903-125F4;0.990394!10689-109F5;0.848961!10648-109A9;0.446397!10784-110H1;0.56831!10744-110C6;0.941833!10772-110F7;0.550719!10474-106I6;0.136207!10600-108E6;0.431605!10684-109E9;0.0168447!12226-129F3;0.346877!12227-129F4;0.0714037!10508-107D4;0.660109!10539-107G8;0.0366445!10607-108F4;0.141593!10555-107I6;0.00741721!10774-110F9;0.0196001!10637-108I7;0.0459894!10663-109C6;4.68401e-06!10728-110A8;0.000354668!10729-110A9;0.0128272!10430-106D7;0.85982!10730-110B1;0.126146!10813-111B3;0.733406!10812-111B2;0.486638!10037-101F1;0.879547!10172-103C1;0.989889!10163-103B1;0.994212!10076-102A4;0.8877!10073-102A1;0.919644!10036-101E9;0.0499285!10195-103E6;0.735884!10277-104E7;0.953681!10434-106E2;0.0617033!10550-107I1;0.719079!10545-107H5;0.618308!10544-107H4;0.888266!10704-109H2;0.696282!10510-107D6;0.89086!10558-107I9;0.00776965!10020-101D2;0.272704!10732-110B3;0.164743!10049-101G4;0.168963!10698-109G5;0.121626!10437-106E5;0.218639!10417-106C3;0.706997!10035-101E8;0.0672958!10171-103B9;0.826299!10157-103A4;0.834185!10034-101E7;0.859034!10072-101I9;0.810257!10199-103F1;0.0189337!10200-103F2;0.0036336!10697-109G4;0.00711312!10723-110A3;0.175678!10179-103C8;0.071361!10160-103A7;0.183169!10180-103C9;0.628023!10162-103A9;0.582733!10021-101D3;0.928748!10840-111E3;0.528558!10706-109H4;0.748709!10033-101E6;0.707028!10032-101E5;0.355646!10490-107B4;0.722629!10439-106E7;0.6798!10022-101D4;0.26668!10176-103C5;0.0535609!10469-106I1;0.661681!10067-101I4;0.9448!10411-106B6;0.699207!10471-106I3;0.662382!10030-101E3;0.942283!10475-106I7;0.0971403!10787-110H4;0.0397008!10477-106I9;0.00807902!10695-109G2;0.0517473!11771-123I7;0.691579!11772-123I8;0.185978!11773-123I9;0.67861!10093-102C3;0.808661!10442-106F1;0.0118309!10442-106F1;0.260565!10201-103F3;0.315483!10639-108I9;0.0615407!11843-124H7;0.00156258!11841-124H5;0.522123!10693-109F9;0.0626706!10436-106E4;0.162405!10483-107A6;0.881903!10282-104F3;0.617052!10023-101D5;0.00283904!10066-101I3;0.000127306!10065-101I2;0.925259!10800-110I8;0.260135!10610-108F7;0.372213!10841-111E4;0.303977!10541-107H1;0.00466038!10842-111E5;0.179502!10562-108A4;0.562999!10024-101D6;0.348692!10064-101I1;0.000659085!10609-108F6;0.526189!10048-101G3;0.455297!10781-110G7;0.483457!10181-103D1;0.67377!10159-103A6;0.293399!10056-101H2;0.491977!10737-110B8;0.585284!10025-101D7;0.781506!10044-101F8;0.284244!10424-106D1;0.251074!10463-106H4;0.551902!10616-108G4;0.496546!10486-107A9;0.785343!10062-101H8;0.812645!10202-103F4;0.0483247!10158-103A5;0.00516825!10441-106E9;0.335278!10031-101E4;0.110039!10063-101H9;0.766837!10063-101H9;0.0381553!11763-123H8;0.249802!11765-123I1;0.640706!11768-123I4;0.55639!10807-111A6;0.770081!10790-110H7;0.186459!10798-110I6;0.165062!10786-110H3;0.137715!10591-108D6;0.728851!10593-108D8;0.0328331!10590-108D5;0.503945!10026-101D8;0.00350533!10096-102C6;0.196411!10168-103B6;0.670243!10154-103A1;0.345335!10209-103G2;0.924363!10061-101H7;0.000472583!10027-101D9;0.48211!10043-101F7;0.603591!10783-110G9;0.379772!10028-101E1;0.403435!10060-101H6;0.0529304!10203-103F5;0.0877245!10059-101H5;0.00096294!10047-101G2;0.032785!10029-101E2;0.00200399!10058-101H4;0.00253188!10418-106C4;0.166112!10492-107B6;0.926365!10694-109G1;0.390919!10797-110I5;0.287826!10057-101H3;0.0793843!10100-102D1;0.0656628!10055-101H1;0.317741!10204-103F6;0.90926!10191-103E2;0.558518!10563-108A5;0.00258631
|name=THB_do
|name=THB_do
|tomtom_result=NR4A2#MA0160.1;-10;0.000666921;0.317454;0.251106;7;GAGGTCAGGTCAGGTCA;AAGGTCAC;+!CREB1#MA0018.2;-9;0.000715795;0.340719;0.251106;8;GAGGTCAGGTCAGGTCA;TGACGTCA;+!RXR::RAR_DR5#MA0159.1;0;0.000845508;0.402462;0.251106;17;GAGGTCAGGTCAGGTCA;AGGTCATGGAGAGGTCA;+!Tal1::Gata1#MA0140.1;0;0.00122132;0.58135;0.251106;17;GAGGTCAGGTCAGGTCA;CTGGTGGGGACAGATAAG;+!Esrrb#MA0141.1;-5;0.00171318;0.815472;0.251106;12;GAGGTCAGGTCAGGTCA;AGCTCAAGGTCA;+!ESR1#MA0112.2;-6;0.00188708;0.898252;0.251106;11;GAGGTCAGGTCAGGTCA;GGCCCAGGTCACCCTGACCT;+!DOT6#MA0351.1;0;0.00211962;1.00894;0.251106;17;GAGGTCAGGTCAGGTCA;AGGATGCGATGAGGTGCAGAA;-!YAP6#MA0418.1;-2;0.00248704;1.18383;0.261896;15;GAGGTCAGGTCAGGTCA;GGTCTGATTACGTAAGCGAC;+!TOD6#MA0350.1;0;0.00699136;3.32789;0.601305;17;GAGGTCAGGTCAGGTCA;AAAACGCGATGAGCTGTGCCT;-!CST6#MA0286.1;-8;0.00761355;3.62405;0.601305;9;GAGGTCAGGTCAGGTCA;ATGACGTAA;+!CREB1#MA0018.2;-4;0.00945551;4.50082;0.652273;12;GAGGTCAGGTCAGGTCA;CCTGGTGACGTC;+!ASH1#MA0276.1;-4;0.0102346;4.87165;0.652273;10;GAGGTCAGGTCAGGTCA;CCGGATCGGG;+!YAP1#MA0415.1;2;0.0103236;4.91404;0.652273;17;GAGGTCAGGTCAGGTCA;ACGAGCTTACGTAAGCAAAT;-!bZIP910#MA0096.1;-11;0.0123585;5.88265;0.683078;6;GAGGTCAGGTCAGGTCA;ACGTCAT;-!RORA_1#MA0071.1;-7;0.0125091;5.95433;0.683078;10;GAGGTCAGGTCAGGTCA;ATCAAGGTCA;+!PPARG::RXRA#MA0065.2;-2;0.0129734;6.17534;0.683078;15;GAGGTCAGGTCAGGTCA;GTAGGGCAAAGGTCA;+!Pax4#MA0068.1;6;0.014007;6.66733;0.698682;17;GAGGTCAGGTCAGGTCA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!BAS1#MA0278.1;3;0.0151995;7.23495;0.706768;17;GAGGTCAGGTCAGGTCA;GCACAGCCAGAGTCAAGTCAA;+!RORA_2#MA0072.1;-4;0.0157127;7.47925;0.706768;13;GAGGTCAGGTCAGGTCA;TATAAGTAGGTCAA;+!YGR067C#MA0425.1;-1;0.0164063;7.80941;0.706768;14;GAGGTCAGGTCAGGTCA;TGAAAAAGTGGGGT;-!TGA1A#MA0129.1;-10;0.0199042;9.4744;0.777333;7;GAGGTCAGGTCAGGTCA;TACGTCA;+
}}
}}

Latest revision as of 13:40, 7 September 2012

Full Name: THB_do

Motif matrix
POACGT
18.0136986301369936.826484018264836517.74885844748862.9086757990867613
220.18264840182650.011.0410958904109744.273972602739725
35.46118721461188310.32876712328768518.0456621004566421.6621004566210065
43.91780821917809910.80365296803652218.6392694063927172.1369863013698627
50.010.3287671232876854.98630136986301220.1826484018265
65.10502283105022117.2146118721461439.8538812785388153.3242009132420094
723.506849315068524.2739726027397253.7990867579908553.917808219178099
82.73059360730593812.10958904109588714.602739726027416.054794520547961
911.2785388127853928.90410958904111313.6529680365297071.6621004566210065
100.02.13698630136986278.31050228310503225.050228310502305
113.324200913242009416.26484018264840314.8401826484018291.0684931506849313
1234.429223744292250.01.06849315068493130.0
130.00.032.885844748858472.611872146118722
140.00.034.429223744292251.0684931506849313
159.8538812785388150.00.831050228310503224.81278538812789
161.899543378995434629.0867579908676143.4429223744292251.0684931506849313
1730.392694063926985.1050228310502210.00.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NR4A2#MA0160.1-100.0006669210.3174540.2511067GAGGTCAGGTCAGGTCAAAGGTCAC+
CREB1#MA0018.2-90.0007157950.3407190.2511068GAGGTCAGGTCAGGTCATGACGTCA+
RXR::RAR_DR5#MA0159.100.0008455080.4024620.25110617GAGGTCAGGTCAGGTCAAGGTCATGGAGAGGTCA+
Tal1::Gata1#MA0140.100.001221320.581350.25110617GAGGTCAGGTCAGGTCACTGGTGGGGACAGATAAG+
Esrrb#MA0141.1-50.001713180.8154720.25110612GAGGTCAGGTCAGGTCAAGCTCAAGGTCA+
ESR1#MA0112.2-60.001887080.8982520.25110611GAGGTCAGGTCAGGTCAGGCCCAGGTCACCCTGACCT+
DOT6#MA0351.100.002119621.008940.25110617GAGGTCAGGTCAGGTCAAGGATGCGATGAGGTGCAGAA-
YAP6#MA0418.1-20.002487041.183830.26189615GAGGTCAGGTCAGGTCAGGTCTGATTACGTAAGCGAC+
TOD6#MA0350.100.006991363.327890.60130517GAGGTCAGGTCAGGTCAAAAACGCGATGAGCTGTGCCT-
CST6#MA0286.1-80.007613553.624050.6013059GAGGTCAGGTCAGGTCAATGACGTAA+
CREB1#MA0018.2-40.009455514.500820.65227312GAGGTCAGGTCAGGTCACCTGGTGACGTC+
ASH1#MA0276.1-40.01023464.871650.65227310GAGGTCAGGTCAGGTCACCGGATCGGG+
YAP1#MA0415.120.01032364.914040.65227317GAGGTCAGGTCAGGTCAACGAGCTTACGTAAGCAAAT-
bZIP910#MA0096.1-110.01235855.882650.6830786GAGGTCAGGTCAGGTCAACGTCAT-
RORA_1#MA0071.1-70.01250915.954330.68307810GAGGTCAGGTCAGGTCAATCAAGGTCA+
PPARG::RXRA#MA0065.2-20.01297346.175340.68307815GAGGTCAGGTCAGGTCAGTAGGGCAAAGGTCA+
Pax4#MA0068.160.0140076.667330.69868217GAGGTCAGGTCAGGTCAGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
BAS1#MA0278.130.01519957.234950.70676817GAGGTCAGGTCAGGTCAGCACAGCCAGAGTCAAGTCAA+
RORA_2#MA0072.1-40.01571277.479250.70676813GAGGTCAGGTCAGGTCATATAAGTAGGTCAA+
YGR067C#MA0425.1-10.01640637.809410.70676814GAGGTCAGGTCAGGTCATGAAAAAGTGGGGT-
TGA1A#MA0129.1-100.01990429.47440.7773337GAGGTCAGGTCAGGTCATACGTCA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:THB_do&oldid=2134085"